Capillimicrobium parvum: DSM104329_04706
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Entry
DSM104329_04706 CDS
T08390
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sbae
Capillimicrobium parvum
Pathway
sbae03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sbae00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DSM104329_04706 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sbae03021
]
DSM104329_04706 (rpoC)
03400 DNA repair and recombination proteins [BR:
sbae03400
]
DSM104329_04706 (rpoC)
Enzymes [BR:
sbae01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DSM104329_04706 (rpoC)
Transcription machinery [BR:
sbae03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DSM104329_04706 (rpoC)
DNA repair and recombination proteins [BR:
sbae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DSM104329_04706 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
PPR_2
Motif
Other DBs
NCBI-ProteinID:
UGS38282
UniProt:
A0A9E6Y150
LinkDB
All DBs
Position
complement(4818474..4822547)
Genome browser
AA seq
1357 aa
AA seq
DB search
MIDINNFDAIEISLASSKQIRSWSSGEVTKPETINYRTLKPEKDGLFCERIFGPTKDWEC
YCGKYKRVRYKGIVCERCGVEVTRSKVRRERMGHIDLAAPVSHIWFFKGVPSRIGYLLDM
APKELEKVLYFAASIVTWVDDEARQADLPELEQRVNEVLESYTAEREERVLELRESLARR
EDFLQTGNQSGFSDEDHLWADSLDVNVKKLDDDEREKLLKEIRKTFEADISDTEAYIEDA
AERMRQVWDLFKEMEPKRIEHDETTFRELKERFGSPYGFGEYFRGGMGAEAIRDLLEQVD
LDAEAIELDEQIRTAKGQKQARAVKRLKVVSAFIQSGNRPEQMVLEAVPVIPPELRPMVQ
LDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPEIIVNNEKRMLQEAVDALFDNGRRGR
PVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVAGPYLKLHQCGLPKLMAL
ELFKPFIMARLVERKSAQNIKAAKKMVDSMIPEVWDVLEEVISEHPVLLNRAPTLHRLGI
QAFEPVLVEGKAIQVHPLVCHAFNADFDGDQMAVHLPLSAEAQAEARILMLSANNILSPA
HGAPLATPTQDMVLGAYYLTYGPDGEALAEIDPASYEPRPHVFRTAQEAELSYDFGAVKL
HDLAEYRPVGLEGHVLTTVGRIIYNDRIERALHEALGDAFDPSTYVFVNKPMKKRDTGAT
IDELVQTYGAATVSQVLDAFKDLGFKYATQAGITVSKNDVVVPPNKPEILAKYDGLVATI
EDQYDMGLITEEERKEAIVSQWDQATDEVAEAMVANLHELNPIYMMANSGARGSFKQIRQ
LAGMRGLMANPKGEIIPRPIKANFIEGLSVLEYFISTHGARKGLADTALRTADSGYLTRR
LVDVSQDVIIREVDCGTEEYIELPAFSESGDPNDNLIGRRAPVDITTKGGKVLAEAGEEI
GRETFVEIIDAFRSDYDEKGENPRVAVRSVLKCEATSGVCQACYGRSMATGQTAQIGDAV
GIIAAQSIGEPGTQLTMRTFHTGGVAGADITHGLPRVVELFEARKPKGLALISEVDGKVS
IEETDKAIAVVVTDDTGEEHRYSFPRRTRIYVEDGQTIEKGAQLNEGSLYPHDVLRIQGR
TATEQYLVKEVQVVYKSQGVDINDKHIELIVRQMLKKVRVDQKGDTDYLPGAFIDRYDFA
RANDEVKAKGGETAQYEEIILGITKASLNTDSFLSAASFQETTKVLTDAALEGKIDRLNG
LKENVIIGKLIPAATGLKRYRRIEIEPAEPLPRADEVGLLDSDDIAAELGLDGDGLGGFG
FDDQELASLGEIGNGGSSDPGFAEELADLDVPEGEDR
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
gtgatcgatatcaacaacttcgacgcgatcgagatcagcctcgcgtcctcgaagcagatc
cggagctggagctccggcgaggtcacgaagcccgagacgatcaactaccgcacgctcaag
cccgagaaggacggcctgttctgcgagcgcatcttcggtccgacgaaggactgggagtgc
tactgcggcaagtacaagcgcgtccgctacaagggcatcgtctgcgagcgctgcggcgtc
gaggtcacgcggtccaaggtgcgccgtgagcgcatgggccacatcgacctcgccgcgccc
gtgagccacatctggttcttcaagggcgtgccgtcgcgtatcggctacctgctcgacatg
gcccccaaggagctcgagaaggtcctctacttcgccgcgtccatcgtgacgtgggtcgac
gacgaggcccgccaggccgacctgcccgagctcgagcagcgcgtcaacgaggtcctcgag
tcctacaccgccgagcgcgaggagcgggtgctcgagctgcgggagtcgctggcccgccgc
gaggacttcctgcagaccggcaaccagtcgggcttctccgacgaggaccacctgtgggcg
gactcgctcgacgtcaacgtcaagaagctcgacgacgacgagcgcgagaagctcctcaag
gagatccgcaagacgttcgaggccgacatctccgacacggaggcctacatcgaggacgcg
gccgagcgcatgcgtcaggtgtgggacctcttcaaggagatggagcccaagcgcatcgag
cacgacgagacgacgttccgcgagctcaaggagcggttcggctcgccgtacggcttcggc
gagtacttccgcggcggcatgggcgccgaggcgatccgcgatctgctcgagcaggtcgac
ctggacgccgaggcgatcgagctcgacgagcagatccgcacggccaagggccagaagcag
gcccgcgcggtcaagcggctgaaggtcgtctccgcgttcatccagtccggcaaccgcccg
gagcagatggtcctcgaggccgtcccggtcatcccgccggagctgcgtccgatggtccag
ctggacggcggccgcttcgcgacctctgacctcaacgacctctaccggcgcgtcatcaac
cgcaacaaccgcctcaagcggctgctcgacctcggcgcgcccgagatcatcgtcaacaac
gagaagcgcatgctgcaggaggccgtcgacgccctgttcgacaacggccgccgcgggcgc
cccgtcaccggcccgggcaaccggccgctgaagtccctgagcgacatgctcaagggcaag
cagggccgcttccgccagaacctgctcggcaagcgcgtcgactactcgggccgctcggtc
atcgtggccggcccgtacctcaagctccaccagtgcggcctgccgaagctgatggcgctc
gagctgttcaagccgttcatcatggcccgcctcgtcgagcgcaagtccgcgcagaacatc
aaggcggccaagaagatggtcgactcgatgatcccggaggtctgggacgtcctcgaagag
gtcatctccgagcaccccgtgctcctcaaccgcgcgccgacgctgcatcgcctgggcatc
caggcgttcgagccggtgctggtcgagggcaaggcgatccaggtccacccgctggtctgc
cacgcgttcaacgcggacttcgacggcgaccagatggcggtccacctcccgctgagcgcc
gaggcgcaggcggaggcgcggatcctgatgctgtcggcgaacaacatcctgtcgccggca
cacggggcgccgctggccacgccgacccaggacatggtcctgggcgcctactacctgacc
tacggtccggatggcgaggcgctggccgagatcgacccggcgagctacgagccgcgtccg
cacgtgttccgcacggcccaggaggccgagctgtcctacgacttcggcgcggtcaagctg
cacgacctggccgagtaccggccggtcggcctggagggtcacgtcctgaccaccgtcggg
cggatcatctacaacgaccgcatcgagcgcgcgctgcacgaggcgctgggcgacgcgttc
gacccgtcgacctacgtcttcgtcaacaagccgatgaagaagcgcgacacgggcgcgacg
atcgacgagctcgtccagacctacggcgccgccacggtgtcccaggtgctcgacgcgttc
aaggacctcgggttcaagtacgcgacccaggccggcatcacggtgagcaagaacgacgtg
gtcgtgccgccgaacaagccggagatcctggccaagtacgacggcctcgtcgcgacgatc
gaggaccagtacgacatgggcctgatcaccgaggaggagcgcaaggaggccatcgtctcg
cagtgggaccaggccaccgacgaggtcgccgaggcgatggtcgccaacctccacgagctc
aaccccatctacatgatggccaactcgggcgcccgcgggtcgttcaagcagatccgtcag
ctggcgggcatgcgcggcctcatggccaacccgaagggcgagatcatcccgcggccgatc
aaggccaacttcatcgagggcctgtccgtgctcgagtacttcatctcgacgcacggtgcc
cggaagggcctggcggacaccgccctgcgcaccgccgactcggggtacctgacccggcgc
ctggtcgacgtgtcgcaggacgtcatcatccgcgaggtcgactgcgggaccgaggagtac
atcgagctcccggcgttcagcgagagcggtgaccccaacgacaacctcatcgggcgccgc
gcgccggtggacatcaccaccaagggcgggaaggtgctcgccgaggccggcgaggagatc
gggcgcgagacgttcgtcgagatcatcgacgcgttccgctccgactacgacgagaagggc
gagaacccgcgcgtcgcagtccgctcggtgctcaagtgcgaggcgaccagcggggtctgc
caggcgtgctacggccgctcgatggcgacgggccagacggcgcagatcggcgacgcggtg
ggcatcatcgccgcccagtcgatcggcgagcccggcacgcagctgaccatgcggacgttc
cacaccggcggcgtcgccggcgcggacatcacgcacggcctgccgcgcgtcgtggagctg
ttcgaggcgcgcaagccgaagggcctggccctgatctccgaggtcgacggcaaggtgtcg
atcgaggagaccgacaaggccatcgcggtcgtggtgacggacgacacgggcgaggagcac
cgctactcgttcccgcgccggacgcgcatctacgtcgaggacggccagacgatcgagaag
ggcgcgcagctcaacgagggctcgctgtatccgcacgacgtgctccgcatccaggggcgc
accgcgacggagcagtacctcgtcaaggaggtgcaggtcgtctacaagtcccagggcgtc
gacatcaacgacaagcacatcgagctgatcgtgcgtcagatgctcaagaaggtccgcgtc
gaccagaagggcgacacggactacctgccgggcgcgttcatcgatcgctacgacttcgct
cgcgcgaacgacgaggtcaaggcgaagggcggcgagaccgcgcagtacgaggagatcatc
ctcggcatcacgaaggcgtcgctgaacacggactcgttcctgtcggcggcctccttccag
gagaccacgaaggtcctgacggacgcggcgctcgagggcaagatcgaccgcctcaacggc
ctgaaggagaacgtcatcatcggcaagctcatcccggccgcgacggggctcaagcgctac
cggcggatcgagatcgagccggccgagccgctgcctcgcgcggacgaggtcgggctgctg
gactccgacgacatcgcggccgagctcggcctcgacggcgacgggctcggcggcttcggc
ttcgacgaccaggagctggcctcgctgggcgagatcggcaacggcggaagctcggatccg
ggcttcgccgaggagctggccgacctcgacgtccccgagggcgaggaccgctga
DBGET
integrated database retrieval system
