Sphingobacterium bambusae: SCB77_07320
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Entry
SCB77_07320 CDS
T09645
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
sbam
Sphingobacterium bambusae
Pathway
sbam03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sbam00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SCB77_07320 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sbam03021
]
SCB77_07320 (rpoB)
03400 DNA repair and recombination proteins [BR:
sbam03400
]
SCB77_07320 (rpoB)
Enzymes [BR:
sbam01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SCB77_07320 (rpoB)
Transcription machinery [BR:
sbam03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SCB77_07320 (rpoB)
DNA repair and recombination proteins [BR:
sbam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SCB77_07320 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
WPL50260
LinkDB
All DBs
Position
complement(1702802..1706611)
Genome browser
AA seq
1269 aa
AA seq
DB search
MANNNIQNERVNFATSKKVIDYPDFLDVQLQSFKEFFQLETTSDNRHQEGLFKVFAENFP
ISDSRNIFVLEFLDYFIDPPRYDIQECIERGLTYSVPLKAKLKLSCNDEEHEDFETIVQD
VYLGTIPYMTPKGTFVVNGAERVIVSQLHRSPGVFFGQSRHTNGTKLYSARVIPFKGSWI
EFATDVNNVMYAYIDRKKKFPVTTLLRAIGYDSDKDILELFDLADEVKVSKSGLKKYVGR
RLAARVLKKWIEDFVDEDTGEVVSIDRNEIILERETVLEEDHIDLIIDAGVKSIILAKED
ASNNADYSIIYNTLQKDTSNSEKEAVEHIYRQLRNAEPPDEETARGIIDRLFFSDKRYDL
GDVGRYRINRKLKLGTADDIKVLTREDIIAIVKYLINLINSKAEVDDIDHLSNRRVRTVG
EQLYAQFGVGLSRMARTIRERMNIRDNEVFTPTDLINARTLSSVINSFFGTNQLSQFMDQ
TNPLAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCTIETPEGPNIGLISSLAV
HAKINNLGFIETPYRKVADGKVVVDQPVVYLSAEDEDDKTIAQANAQYDDKGNFLDPKVK
ARYEGDFPIIEPERLDYMDVAPNQITSIAASLIPFLEHDDANRALMGSNMQRQAVPLLRP
SAPIVGTGLEARVASDSRTLINAEGNGVVEYVDANEIKIRYERTEDDRLVSFDDDVKTYR
LTKFKKTNQNTCINLKPIVIKGQKVSKGEVLCEGYATENGELALGRNLKVAFMPWQGYNF
EDAIVISERVVSQDLFTSLHIEEFELEVRDTKRGEEELTADIPNVSEEATKDLDENGIIR
IGAEVNGGDILIGKITPKGESDPSPEEKLLRAIFGDKAGDVKDASLKASPSLKGVVIDTK
LFSRAKKMSKEVERKALDKLEVAHDRAAKILKERLVEKLFTVVNGKTSQGVYNVYKELLV
PKGAKFTQKILTDLDYTHINPTGWTTDDDKNELIKLALHFYNIKINEELGAFKREKFAIS
VGDELPSGIVQMAKVYVAKKRKLKVGDKMAGRHGNKGIVARIVRDEDMPFLADGTPVDIV
LNPLGVPSRMNLGQIYETVLGWAGQKLGMKFATPIFDGAEMGEVEEWISKAELPASGRTY
LYNGLTGDRFDQPTTVGVIYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFG
EMEVWALEAFGASNILQEILTVKSDDVVGRAKTYEAIVKGNNLPTPSVPESFNVLVHELR
GLGLDITLD
NT seq
3810 nt
NT seq
+upstream
nt +downstream
nt
ttggcaaacaataatattcaaaacgaaagagtgaattttgctacaagtaagaaggtaatc
gattacccggatttcttggacgtgcaattgcaatctttcaaggagttttttcaattagaa
actacttctgacaatcgccatcaggaagggctgttcaaggttttcgcagaaaacttccct
atttctgattcaagaaacatctttgtgcttgagtttttggattattttatcgatcctcct
cgctacgacattcaagaatgtattgagcgcggtttaacttatagcgttcctcttaaggca
aaattgaagttatcttgtaatgacgaagagcacgaagacttcgaaaccattgtacaggat
gtatatttgggaacgatcccttacatgactccaaaaggtaccttcgtggtaaacggagca
gagcgtgtaatcgtttctcagttgcaccgttcccctggtgtattcttcggtcagagtaga
cacacaaatggtactaaactttattctgcaagggtaattccttttaaaggatcttggatc
gagtttgcaacggacgtaaacaacgtcatgtatgcttacatcgaccgtaaaaagaaattc
ccagttactactttgttacgtgcgatcggatacgattcggataaagatatccttgaattg
tttgatctagcagatgaggttaaagttagtaagtctggtcttaagaaatacgttggtcgc
cgtttggcagctagggtattgaaaaaatggatcgaagatttcgtggatgaggatacaggt
gaggtggtttctatcgatcgtaacgagataatcttagaacgtgaaacagttttagaggaa
gaccacattgacttgatcattgacgcaggtgttaaatctattatcctagcgaaagaagat
gcatcaaacaatgcggattactccattatatataatacattacaaaaagatacttcaaac
tctgaaaaagaggctgtggagcatatctaccgtcagttgcgtaacgcagaaccacctgat
gaggagaccgctcgtggtatcatcgatcgtttgttcttctcggacaagcgttacgactta
ggcgatgtaggtcgttaccgcatcaaccgcaagttgaaattgggtactgcagatgatatc
aaagtgttaacccgcgaagatattattgctattgtgaagtatttgatcaacttgatcaat
tcaaaagctgaggtggatgatattgaccacttatctaaccgtcgtgtacgtacggtaggt
gagcagttgtatgcacaattcggtgttggtctttctcgtatggctcgtaccatccgtgag
cgtatgaacattcgtgataacgaggtgttcacgccgactgacctgatcaatgcgcgtacg
ctatcatctgtaatcaactcgttcttcggaacaaaccagttgtcgcagttcatggaccaa
accaatccattggcggagatcacgcacaagcgtcgtttgtcagccttaggacctggaggt
ctttcccgtgagcgtgctggtttcgaggttcgtgacgttcactatacgcactatggtcgt
ctttgtaccatcgaaactcctgagggaccaaacatcggtttgatttcttctttggcagta
cacgcgaaaatcaacaacttgggctttatcgaaacaccataccgtaaggtagcagacggt
aaagttgtcgttgaccagcccgttgtttatctatctgcagaagatgaagacgataaaact
attgcacaggccaacgcgcagtatgacgataaaggtaacttcctagatcctaaagtaaaa
gcgagatacgagggtgacttcccgattatcgagccagaacgtttggactacatggacgtt
gcgcctaaccagattacgtcgattgccgcatcattgattcctttcttggagcatgatgat
gccaaccgtgccttgatgggatccaacatgcagcgccaagcggtgcctttgttgcgccct
agtgcaccgatcgttggtacaggcttggaggctcgcgtggcatctgactcgcgtaccttg
atcaacgccgaaggcaatggtgtggtggagtacgttgatgcaaacgaaattaaaatccgt
tacgagcgtaccgaagatgaccgtttggtttctttcgatgacgacgtaaaaacatataga
ttaacgaaattcaagaaaaccaaccagaatacttgtatcaacttgaagcctattgttatc
aaaggacaaaaggtaagtaaaggtgaggtattgtgtgaaggttatgcaaccgagaatggt
gagctagcgcttggccgtaacttgaaagtggcattcatgccttggcaaggttacaacttt
gaggatgcgatcgtgatttcagagcgtgtggtatcgcaagatttgttcacttctcttcat
attgaagagtttgaattggaagtgcgtgatacgaaacgtggtgaagaagaattaacagct
gatatccctaacgtttcggaagaagcaaccaaagatcttgacgagaacggtatcatccgt
atcggtgctgaggttaacggtggtgatatcttgatcggtaagatcacccctaaaggggag
tctgatccttcaccggaagagaaacttcttcgtgcgatctttggtgataaagctggagat
gtgaaagatgcttctttgaaggcttctccatcattgaaaggtgtggttatcgataccaaa
ttgttctctcgtgctaaaaagatgtctaaagaagtcgaaagaaaagctttggataaactg
gaagtggcacacgatagagctgcgaagatcttgaaagaacgtttggtagagaaattgttc
acggttgtgaacggtaaaactagccaaggggtatacaatgtttacaaagagctgttggta
cctaaaggagcgaagtttacacaaaagatcttaacagacttagactatacgcatatcaac
ccaacgggttggacaacagatgacgataagaacgagttgatcaaattggcgttacacttc
tacaacatcaagatcaatgaggaattgggtgcatttaaacgtgagaaatttgcgatctcc
gtgggcgatgagcttccttcaggtatcgtgcagatggctaaagtttacgtagctaagaaa
cgtaagttgaaagtaggggataagatggcgggtcgtcacggtaacaaaggtatcgttgca
cgtatcgtacgtgatgaggatatgcctttcttggccgatggaacgccagttgatatcgtg
ttgaacccactaggggtaccttcacgtatgaaccttggacagatctacgaaaccgtatta
ggctgggccggacagaaattgggtatgaagttcgctacgccaatcttcgacggtgctgaa
atgggtgaggtagaagagtggatctcgaaagcggaattgccagcttctggtagaacatac
ttgtacaacggtttgaccggtgatcgttttgaccaaccgacaaccgtaggtgtgatctac
atgcttaaactgggacacatggtagatgataagatgcacgcgcgttctatcggaccatac
tccttgattacgcaacagccattgggtggtaaggcacagttcggtggtcagcgttttggt
gagatggaggtttgggcattggaagcattcggtgcgtctaacatccttcaggaaatctta
acggtgaaatccgatgatgtggttggtcgtgcgaaaacctacgaggcaatcgttaagggt
aacaatttaccaacgccatctgtaccagaatcgttcaacgtattggtacacgagctacgc
ggtttaggtttagatatcacattagattaa
DBGET
integrated database retrieval system
