Fluviispira sanaruensis: JCM31447_23650
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Entry
JCM31447_23650 CDS
T05949
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
sbf
Fluviispira sanaruensis
Pathway
sbf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sbf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JCM31447_23650 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sbf03021
]
JCM31447_23650 (rpoB)
03400 DNA repair and recombination proteins [BR:
sbf03400
]
JCM31447_23650 (rpoB)
Enzymes [BR:
sbf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JCM31447_23650 (rpoB)
Transcription machinery [BR:
sbf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JCM31447_23650 (rpoB)
DNA repair and recombination proteins [BR:
sbf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JCM31447_23650 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
BBH53912
UniProt:
A0A4P2VXY8
LinkDB
All DBs
Position
complement(2737974..2742146)
Genome browser
AA seq
1390 aa
AA seq
DB search
MANLASSFVRHRRTFAKVKPIIGMPNLIDIQKKSYAEFLQGTDSAENRIEAGLQGVFKSV
FPVQDFDATASVEFVSYSLDEPKYTVEECRSKGMTYAAPVKVLIRLIIWDVDHETGVKSI
RGFKEQEVYFGEIPLMTQNGTFIINGTERVVVSQLHRSPGVFFDHDKGKTLSSGKFLYNA
RIIPYRGSWLDFEFDTKDILYCRIDRRRKMPATVLLKALGYTTEELLGKFYECETVVIRD
GQYFRKVNLDRLRGQRASSDIMDPKNPSNTLVKRNRKISALHIKQLKAAGVEELQFPREE
IIGKIIGRDIIDDDTGEVLFPINTDISEKILEAIVLKGISSFEILFIDDLNVDSSFRDTL
MVDKTANTEEALLEIYRRMRPGDPPTLENASNLFQNLFFEKDRYDLSRVGRLKLNEKLDL
EIDIDYRTLTREDIIGSVKRLLDVRSGKIKVDDIDHLGNRRVRAVGELLENQYRIGLTRI
ERAIKERLQLQDLDSLMPHDLVNAKPVTAVVKEFFGSSQLSQFMDQTNPLAEVYHKRRLS
ALGPGGLSRERAGFEVRDVHPTHYGRICPIETPEGPNIGLIVSLASFAQVNKYGFIETPY
RSVVDRLPVDDVRYYSSTDEWRDHVIAQAYMHLDKENKIKADDLLNARSSGETNIYSADE
VDLMDVATNQAVSVAASLIPFLQNDDAHRALMGANMQRQGLPLLRTKAPLVGTGMERTVA
ADSGVTVVARRAGTVIAVDAERVVIKTNEASSDITEVASEVDIYTLIKFTRSNVDTCVNQ
KPIVKVGDKVERNDIIADGFATEMGELALGQNVVVAFLPWNGYNYEDGIVVSERIVREDL
YTSVYIQEFECISRDTKLGKEEITSDIPNVSDESLKDLDDAGVVRVGAEVKPGDILVGKL
TPKAETQLTPEEKLLRAIFGEKAADVRDTSLRVPPGVQGTVIGAKVFSREGAELDSRMIQ
VQEQEIAKLKKDERDRIQIIRKSTAEKLEDLIAGETAAVSIEVKNESGVLKVTSGEKLTT
EVLADLSIEQIKALEVISSDKSALLAKIKKSMNEKIALVREMTETQIARAKRGDELPPGV
IKMVKVYVAIKRRLQVGDKLAGRHGNKGVISKIVPIEDMPFLDNGQPVDIVLSPLGVPSR
MNIGQIMETHFGWAARGIGIKINEMLDKAAPRHELEEYICKVWDDPSVHEFVKTCSNDEL
RQFVRKYKEGVTLSNPVFDGAVEEEIFKYLELADLDRSGQVTLYDGRTGEKFNRQVTVGV
MYVLRLHHLVDEKIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWAMEAYGAAYTLQE
FLTVKSDDIAGRTKMYEAVVKGENMMLPGLPESFNVLIKEMQSLALDVSLIRDESEISLD
DLQRDVREIQ
NT seq
4173 nt
NT seq
+upstream
nt +downstream
nt
atggccaacttggcatctagctttgtccgtcaccgccgcacttttgcaaaagtcaaacct
attattggtatgcccaatctaattgacattcaaaagaagtcgtacgcagaattcttgcaa
ggtactgattccgctgaaaatcgtattgaagctggtcttcagggcgttttcaaaagcgta
tttcccgttcaagattttgatgcaacagcttctgttgaattcgtcagttactcacttgat
gaaccaaagtacactgttgaggaatgccggtcaaagggcatgacctacgctgcacctgtt
aaggtcttaatccgtctcattatttgggatgttgaccatgaaacaggcgttaaatccatc
cgtggatttaaagagcaagaagtttattttggtgaaatcccacttatgacacaaaacggt
acctttattattaacggtacagaacgtgttgtggtttcacagttacaccgctccccgggt
gtcttcttcgatcatgacaaaggaaagacactttcttctggtaagtttttatacaatgca
cgtattattccttaccgtggttcatggctcgatttcgaattcgatacaaaagatatcctt
tattgccgcattgatcgtcgcagaaaaatgcctgcaactgtgctcttaaaggcgcttggt
tatacaacggaagaattgctcggcaagttctacgaatgcgaaactgtcgttattcgtgat
ggtcagtatttccgtaaagtaaacctagatcgtttgcgtggacaaagagcttccagtgat
attatggatcctaaaaatccaagtaacacacttgttaaacgcaaccgtaaaatttcagct
ttacatattaaacaacttaaagcagctggtgttgaagaacttcaattcccacgcgaagaa
attattgggaaaatcattggccgtgacatcatcgacgatgacacaggtgaagttctattc
ccaatcaacacggacatttcagaaaaaattctcgaagcaattgtcctcaaaggaatctct
tcgtttgaaatcctctttatcgatgatctcaacgtggactcttctttccgtgacacgctt
atggttgacaaaacagccaatacagaagaagcgttgctcgaaatttatcgcagaatgcgc
ccaggtgatccacccacacttgaaaatgcaagtaatcttttccaaaatctcttttttgaa
aaagatcgctatgacctctcccgtgttggtcgtctcaaattaaatgaaaaactcgatctc
gaaattgatatcgattatcgcacattaacccgtgaagatatcatcggttctgtgaagcgt
ctcctcgatgtgcgcagcggtaaaatcaaagtggacgatattgaccaccttggtaaccgt
cgtgtgcgtgctgtgggtgagcttctcgaaaatcaataccgcattggtttaactcgtatt
gagagagctattaaagaacgtcttcaactccaagaccttgacagccttatgccgcatgac
cttgtcaacgcgaagcctgtgactgctgttgtgaaagaattctttggttcttcacagtta
agtcagtttatggatcagacaaaccctctcgcagaggtttatcataaacgccgtctttca
gccctcgggcctggtggtctttcccgtgaaagagctggtttcgaagtgcgtgacgtacac
ccaacgcattatggacgcatctgtccgattgaaacgccggaaggtccaaacattggtctt
atcgtttcgctcgcttcatttgcccaagtaaacaaatatggctttattgaaacgccatat
cgctctgtggttgatcgtttgcctgttgacgatgtgcgttactattcatcaaccgatgaa
tggcgcgatcacgttattgcgcaagcgtatatgcatctcgataaagaaaacaaaatcaaa
gcagatgatctcttgaacgcacgtagttcaggggaaacaaacatctactcagcagacgaa
gtggacttaatggacgttgcaacgaaccaagcggtttccgttgcggcatctcttattccg
ttcctgcaaaatgacgatgcccaccgtgccctcatgggtgccaacatgcaacgccaaggt
cttccattgttaagaaccaaagcgcctcttgttgggactggtatggaacgaactgtggct
gctgactcgggtgtgactgtggttgcgcgtcgtgcgggtacagttatcgccgtggatgca
gaacgcgttgttatcaaaaccaatgaagcatcctcagacatcacagaagtggcttctgaa
gttgatatttacacactcatcaagtttacccgttcaaacgttgatacctgtgtcaaccaa
aaaccaatcgttaaagttggtgacaaagttgaacgcaatgacatcattgcagacggtttt
gcaacggaaatgggcgaactcgctcttggccaaaacgtcgttgtcgcattccttccatgg
aatggttacaactacgaagatggtatcgttgtgtctgaacgcattgtccgtgaagacttg
tatacatctgtttatattcaggaatttgaatgtatcagccgtgacaccaaacttggaaaa
gaagaaatcacttccgatattccaaacgtcagcgacgaatccctaaaagatctcgacgat
gccggtgttgtgcgtgtgggcgctgaagtgaaacctggcgatatcctcgttggtaagctc
actccaaaagcagaaacacagctcactccagaagaaaaacttctccgcgctattttcggt
gaaaaagcagccgatgtgcgtgacacgtctcttcgtgttccaccaggggtacaaggaact
gttattggagcaaaagtattttcgcgtgaaggtgctgaactcgatagccgtatgattcaa
gttcaagagcaagaaattgctaaactcaaaaaagatgaacgcgatcgtatccaaatcatc
cgtaagtccacggctgaaaaacttgaagatctcattgcaggcgaaacggctgcagtcagc
attgaagttaaaaatgaaagcggcgtactcaaagtcacttcaggtgaaaaactcacaaca
gaagtgctggctgatttatctattgagcaaatcaaagccctagaagttatcagctctgac
aagagtgctcttctggcaaaaatcaaaaaatctatgaatgagaaaattgctctcgttcgt
gaaatgacagaaacccaaatcgcccgtgcaaaacgtggtgacgaattgccaccaggcgtt
atcaaaatggttaaagtctacgttgcaatcaaacgccgtctgcaagtgggtgataagctc
gcgggtcgccatggtaacaagggtgttatttcaaaaattgttcctatcgaagacatgcca
ttcctagacaatggccagcctgtagatatcgttctcagtccgctcggggttccatctcgt
atgaacatcggtcagattatggaaacgcactttggttgggcagcacgtggaattggtatt
aaaatcaatgagatgctcgacaaagcagctcctcgtcatgaacttgaagagtatatctgc
aaggtttgggatgatccttctgttcatgagtttgttaaaacatgctctaacgacgaactt
cgccaatttgtgcgcaagtataaggaaggtgttactctctcgaacccagtgtttgacggt
gctgtagaagaagagattttcaaatatctcgaactcgcagatctcgacagatctggacaa
gttacactttacgacggaagaaccggtgagaaattcaatcgtcaagttacagttggtgtt
atgtatgttctccgactccaccacttggtcgatgagaaaatccatgcgcgttccattggg
ccttacagccttgtcacacagcaacctttaggcggtaaagcacagttcggtggtcagcgt
cttggggaaatggaagtgtgggcgatggaagcctatggtgcggcatacacccttcaggaa
ttcctcactgttaaatctgacgacatcgcaggccgtacaaagatgtatgaagctgttgtt
aagggtgagaacatgatgcttcctggtttaccagaatccttcaatgttcttatcaaagaa
atgcaatcgcttgcgttggatgtcagcctcattcgcgatgaaagtgaaatcagtctcgat
gacttgcaacgtgatgtgcgcgaaatccaataa
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