Sorghum bicolor (sorghum): 8058085
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Entry
8058085 CDS
T01086
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
8058085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbi03019
]
8058085
Messenger RNA biogenesis [BR:
sbi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
8058085
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
8058085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
RM44_endonuclase
Motif
Other DBs
NCBI-GeneID:
8058085
NCBI-ProteinID:
XP_021310665
LinkDB
All DBs
Position
1:complement(58073633..58096670)
Genome browser
AA seq
2421 aa
AA seq
DB search
MIPFNPAVAAEVRALIQGAEDSTFDPIYRELSQLVDCSPDGCVLLLQVCVDEMLLNIGGA
KNHQLKHDLVATIFRYCVDKPYFSTSFCEALRAIPVSDGFLETLSNELELSAAERVGVGL
ALSDSENPDLNLEGRKFVIAQIEELCSNHAHSVSNEWIQEIVVFLLRTEGLSKHMNSFTK
IISLLNVEEGPFYFPVPLQQANSDQANSLRYTEMCIGSSDDDFDSLLSEIGKQISLPDII
SELGYGCTSDTTHCKEMLSLLEPLDDMGISKLLGAVVCTRIGVGEAQNTYSIFLSAFGNN
QTIDSSQLTAWDIDVLVDSINEIAPGTNWTHVIESLDHEGFIIPDEAAFRLLMSIYSRSC
KDPFPLHAICGSLWNNTEGQLSFLKHAVALPNDTFTFAHSTRKMAFPDLGNHNQGNQAWY
CLDLLEVLCQLAEFGYAKPVRAMLDYPLINCPEVLLLGVSHINTVYNLIQQEVLSCVFPS
VVKNTMHSSLMNYLWHINPYLTLRGFVDAHSDISCLLRTVEICEDLKILATVLDSTPFAF
SIRLATAAFRKDHSHLEKWLSEKLSAQRVTFLEECVQFLKEIMINTNYNAVEGAIQHLQA
TLSNICWDSCPVFIKVLRSHSGQLLSNQLVDELRRVESMYESSNRGDVGRDMPSSDGGSE
DIEAQANIYFQQMFAGQISIDAMIQMLARFKESKDKRELSIFNCMISNLFEEYKFFPKYP
DAQLKLAAVLFGSVIKHQLVAHLALGIALRGVLDALRKSIDSKMFMFGTTALEQFMDRVI
EWPQYCNHILQISHLRGTHAELVSAIEQALAKISLSQNEPNLSPMLPVDQRGSGSQSIEN
IESSEAPWQFINSTPTQLDRTISSFALQQKNQGFLEERSKGSTSTSQTKTIMAIGQPPLT
SISDLGVNSKTTVSLSAQASPHHSSSASALSQSSGFLRSRTSAPAGILRQPSYTTGFGSA
LNIETLVAAAEQRDTPIEAPPPEVQDKIFFMINNISISNMEAKAKEFNEVLQEHYYPWFA
QYMVMKRASIEPNFHDLYLKFFDKVNTKSLNKEIMKATYENCKVLLRSDLIKSSSEERSL
LKNLGSWLGKCTIGRNQTLRAKEIDPKILIVQAYERGLMIAVIPFTSKILEPCQSSIAYR
PPNPWTMGILSLLVEIYNLPNLKMNLKFDIEVLFKNLSVDMKDVKPSSLLKDRIRQVVGN
PDFSNKDVIASQTPSAVEVSSGIVPSLNHVELQPEINSTSRATSLPNMLSQYAAPIRLPP
NSMVEDDKVALIMPEQVSSHSLTQVAPPQTPSPSPFSLSQLMAAIPRADIYFRINEKLNS
LGPQLQYSKIMDVALDKAIKEIIAPVIQRSVTIASRTTKELIVKDYAMESDDGTISRSAH
LMVSTLAGSLAHVTSKEPLRVALLSHLRSLVQNLISNSETTEQISHILVNDNLDLGCALT
ETVATRKAIEMIDGDIKQAFAQLRRQKELQGSAYYDVSSYTQGLTRVPDVLRPKPSGNLS
AVQRRVYEDFMTMWHSQSSQNAGATTSATTGVIAPTESSTASVHGPILAPSASSSFSTLQ
FAAFTSANHSTELIPDKIDPGAPQLLSMTDSSGQARGITNVASIFPPMASGDLLVGELAT
ATKDIGSAISPSPTVAIDRLGSAFPELLNTGDALDRYEHVWQKLETLIANNGKEVEIQSV
IAEVPDILCRCVSRDEAALAVAQKVFRSLYENASKSTFVTWLLATLVAVRDVYKLVVKEL
TSWVIYSDEEKKFNLEIVIGLICYDLLHLGEYNAHLAKLIDGGRNKMATEFAISLIKTLV
TQESNSVSELFSVVDALSKLAIRPGSPDSLQQLVEVARSTFTSTNYAASKDEKVIQSRDK
KVVSGQSLMNNEDNADGIAFTNAADFQDKVAVLFSEWCQICDHPTTSDSVYSHHIVQLQQ
NGLLKGDDLTDRFFFNLTELAIAHAVSEQAIAPSGLSPQSSQQHQISYFSIDSYSKLVTS
VVKLVDLGQNKGSLLHKIFSVTARIIQKDAEEKKLSFNPRLYFRLFINWLSELTSSDFHH
DGANFQVLSTFANVLHILQPLRVPAWSFAWLELVSHRCFMPKLLMCNLQKGWPFFQRLLV
DLFKFMEPYLRNAELGQPILLLYKGTLRVLLVLLHDFPEFLCDYHFSFCDVIPPSCIQMR
NVILSAFPRNMRLPDPSTPNLKIDLLAEISIVPRIMTDVDGALKAKQMKTQIDEYLKRPE
GSLFLTDLKQKLLLTQNEANIAGTRYNVPLVNSLVLYVGMQAVQQLQQNKVNASAPAQIN
QSQMDIFQIETATEMFRNLVMTMDTEGRYLILNAIANQLRYPNSHTHYFSFIILYLFAEA
TQEIVQEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYSFWTRSFTHCAPEIEKLFES
VARSCGGKGADDGMGLADGGH
NT seq
7266 nt
NT seq
+upstream
nt +downstream
nt
atgatcccgttcaaccccgcggtcgccgcggaggtgcgcgccctgatccagggcgccgag
gactccaccttcgatcccatatatcgcgagctctcccagcttgtggattgtagccctgat
gggtgcgttttgttgcttcaagtttgtgtggatgaaatgctcttgaacattggtggggca
aagaaccaccaattgaaacatgatcttgtagccaccatcttcagatattgtgtggataaa
ccctacttcagcaccagtttctgtgaagcattgagggcaatacctgtcagcgatgggttc
cttgaaacactgtccaatgaacttgagttatctgcagctgagagggttggagttggactt
gctctctcagattctgagaatccagacttgaacctggaagggagaaaatttgtaattgct
caaattgaggagttatgctcaaaccatgctcattctgtatcaaatgaatggatccaggag
attgttgtgtttcttcttcggactgaaggcctctcaaagcatatgaactcctttactaag
attatttccctattaaatgttgaagaggggccattctattttcctgttccacttcagcaa
gccaacagtgatcaagcaaattctttgagatatacagagatgtgcattggtagctcagat
gatgattttgactcccttctatctgaaattggaaaacaaataagcctgcctgatatcatc
agtgaactgggatatggatgtacttctgatactactcattgtaaagaaatgttatcactc
cttgagcctcttgatgatatgggaatctctaagttactaggggcggttgtttgcactcgt
attggtgttggagaagctcaaaatacatattcaatattcctttcggcttttgggaacaac
caaacaattgactcatctcagttgactgcatgggatattgatgtccttgtggattcaatc
aatgaaattgcacctggaactaactggacgcatgtaatagaaagtcttgatcatgagggt
ttcattatccctgatgaagcagcttttcgtttattgatgtctatatattctcgatcctgc
aaggatccattcccacttcatgccatttgtgggtcactgtggaataatacagaaggacaa
ctgtcattcttgaaacatgcagtggctttgccaaatgatacatttactttcgcacattct
accaggaagatggcttttccagacttgggaaatcacaaccaaggcaaccaggcttggtac
tgtcttgaccttcttgaggtgttatgtcagcttgccgaatttggctatgcaaagccagtg
cgagcaatgcttgattatcctctgatcaattgtcctgaagtgttacttcttggtgttagc
catatcaatactgtatataatctcatccagcaggaagtgttgtcatgtgtttttccttct
gtggtgaagaacaccatgcacagcagtcttatgaactatctttggcatatcaacccttac
cttactcttcgaggatttgttgatgctcattctgacataagttgtcttctgcgaacggtt
gagatatgtgaagacctaaagatcttggctactgtccttgattccaccccgtttgcattt
agcattagacttgctacagctgcctttaggaaggaccatagccatcttgaaaaatggcta
tctgaaaagttgagtgcacaaagagttacctttcttgaggaatgtgttcaattcttgaaa
gaaattatgataaacacaaattataatgctgtggaaggtgccattcaacatcttcaagct
actctttcaaatatctgctgggactcttgccctgtatttataaaggttcttcgttctcac
tcggggcagctgctatctaaccaactggtggatgaactaaggagagttgaatcaatgtat
gaatcaagtaatcgtggtgatgtaggaagggacatgccttcttctgatggaggttctgaa
gacatcgaagctcaggcaaatatttattttcaacagatgtttgctggacagataagcatt
gatgctatgatacagatgcttgcacgcttcaaagaatcaaaagacaagagggagctatca
attttcaactgcatgatctcaaatttgtttgaagaatacaagttcttcccaaagtatcca
gatgcacaacttaaattagctgctgtgctttttggctctgtcataaaacatcaacttgtg
gcccacctggcacttggaattgctctacgcggtgttcttgatgccctgcgtaaatccatt
gattcaaagatgtttatgtttggtacaacagcattggagcagtttatggatcgagtaatt
gagtggccacaatattgcaatcatatactgcagatttcacatcttcgtgggacacatgct
gagttagtttctgctatcgagcaagcacttgccaagatatcgttgagtcaaaatgagccc
aatttgagccccatgcttcctgtggatcagcgaggttctggttcacagtctattgaaaac
atagagtcttctgaagcaccatggcagttcataaattcaactccaacacaactagatagg
acaatttcttcctttgcattgcaacagaagaatcagggatttctcgaggagaggtccaaa
ggctctactagtaccagtcaaacaaaaaccatcatggctattggtcaacctcctctcact
tcaattagtgatttgggtgtcaattcaaagactactgtgtcactgtcggctcaagcttca
ccccatcattctagcagcgcatcagctctttcacaatcttctggttttctacgatctaga
acttcagctccagcaggcattcttcgacaaccttcctacactacaggatttggatctgct
ttaaatatcgagactcttgttgctgcagctgaacaaagggatacaccaattgaggcccca
ccacctgaagttcaagacaaaattttcttcatgatcaataatatttccatttctaatatg
gaggctaaggcaaaagagtttaatgaggttttacaggagcattattatccttggtttgca
caatacatggttatgaaaagggcaagcattgaaccgaatttccatgacttatatttgaaa
ttcttcgacaaggttaacacaaaatcattgaataaggaaataatgaaagctacatacgag
aactgcaaggtcttgttacggtcggatcttatcaaatctagttctgaagagcgttcgttg
ctaaaaaatcttggtagctggcttggaaaatgcactataggtaggaatcaaacattacga
gcaaaggaaattgacccaaaaatcttaatagttcaggcttatgaaagggggttgatgatt
gcggtcattccgtttacttcaaagattcttgaaccttgccaatcaagtatagcatatcgt
cctccaaatccctggacgatgggtattcttagtcttcttgttgagatatacaatctacct
aatctcaaaatgaacctcaagtttgacattgaggtcttgtttaagaatcttagtgtggac
atgaaagatgtaaaaccatcttctcttcttaaagatcggattcggcaagttgtcggaaat
ccagatttttcaaataaagatgttattgcatctcaaacaccttcagcagtggaggtctct
tccggtatcgttccttcactgaaccatgtagaactacaaccggagattaatagcacttca
cgtgctacaagccttccaaatatgcttagtcagtatgcagcacctattcgcctacctcca
aacagtatggttgaagatgataaggttgctttaatcatgcctgaacaagttagctctcac
agtctgacccaggttgcaccacctcaaacaccatcaccgtccccattttctttgagtcag
cttatggcagcaattccacgtgctgatatatatttcagaatcaatgaaaagcttaactca
cttggcccacaattgcagtatagcaaaatcatggatgtggcattagataaggctattaag
gagattatagctcctgttattcaaagaagtgttacaattgctagccgaaccaccaaggaa
cttattgtaaaggattatgcaatggaatctgatgatggtaccatttctcgctctgcacat
ttgatggttagtacattagcaggaagtttggcccatgttacttccaaggagcctcttcgt
gttgctttgttatctcatcttcgaagtcttgttcagaacctgattagcaatagtgaaacc
actgaacaaattagtcacatccttgttaatgataatctggatcttggatgtgctctaaca
gagactgtggcaacacgcaaggctatagagatgattgatggagacataaagcaagctttt
gcacaactcaggagacaaaaggaactacaaggctcagcttattatgatgtttcttcttac
actcaaggtcttacacgtgtccctgatgtactgcgtcctaagccttctggtaatttgtct
gctgtccaacgacgagtatacgaggacttcatgactatgtggcatagccagagtagtcaa
aatgctggtgcaacaacttctgctacaacaggggtcattgccccaaccgaatccagtact
gcttcagttcatggaccaattttagcaccatcagcctccagtagtttctcaactctccaa
tttgctgcattcacatctgcaaatcattcaacagaactaatacctgacaagatagatcct
ggtgctccacaacttttaagtatgactgacagttctggccaagctcgtggaatcacaaat
gttgcatcgatttttcctcctatggcctctggtgaccttctagtgggtgaactagcaact
gcaactaaggatataggttctgcaatatcaccttcacccacagttgctattgatcgtcta
ggatctgcttttccagaactgctgaatactggtgatgcattggacagatatgaacatgtt
tggcagaagctcgaaaccttgattgcaaacaatgggaaagaggtggaaattcagtctgtt
atcgccgaagttcctgatatcttgtgcagatgtgtgagtcgagatgaagctgcgttagca
gttgcacagaaggttttcagaagtttgtatgaaaatgcgtcaaagagcacttttgtcact
tggcttctagcaacccttgttgcagtgcgtgatgtttacaaacttgttgtgaaagagttg
acaagctgggtaatatattcagatgaagagaagaaatttaacttggagatagttattgga
cttatttgttatgatctgcttcatcttggggagtataatgctcatttggcaaagcttata
gatggtggaagaaacaagatggcaacagaatttgctatatcactcatcaagacattggtt
acccaagaatccaatagcgtctccgagctttttagtgttgttgatgccttatcgaagctt
gcaatcaggcctgggtcacctgattcattacagcaattggttgaagttgcaaggagtacc
ttcaccagtactaattacgctgcttcaaaggatgaaaaggttattcaatcaagagataaa
aaggttgtatctggtcaatctctgatgaataatgaagataatgctgatggcattgctttt
actaatgctgctgattttcaggacaaggttgcggtcttgttttctgaatggtgtcaaata
tgtgaccatcccactaccagtgattcagtatatagccatcacattgtgcagttgcaacag
aatggcttgctgaagggagatgatttgactgaccgttttttctttaatctcactgaactt
gctattgcacacgcagtgtctgagcaagctattgctcctagtggactatctccacagtca
tcccagcaacaccagatttcttatttttcaattgattcatattcaaaacttgtgacttca
gttgtcaagttagtggatttgggacaaaataaaggcagtcttctccataagattttctct
gtgacagctaggatcattcagaaagatgctgaagaaaagaaactttctttcaatcctcgg
ctgtatttccgtttgtttataaattggttaagtgagcttacttcttctgactttcaccat
gatggcgctaattttcaggttttgagtacatttgcaaatgtacttcatattctgcaaccc
ttgagagttcctgcttggagttttgcctggcttgaattggtgagccatcgatgcttcatg
ccaaagttattaatgtgcaatttgcaaaaaggctggccatttttccagaggttgcttgtc
gatttgttcaaattcatggagccatacctaagaaatgctgaattgggacaacctattctc
cttctgtacaaaggaacattaagagtgctacttgtgctattgcatgacttccctgaattt
ctttgtgactatcacttcagtttctgtgatgtgattcccccaagctgcattcaaatgcgt
aatgttattcttagtgctttcccacgtaatatgagacttccagatccctccactcctaac
ctaaagattgatctgctagcggaaatttcaatagttcctcgaatcatgactgatgtggat
ggtgctttgaaggcaaagcaaatgaagactcagattgatgaatacctaaagagaccagaa
ggttccctctttttaaccgatctaaagcagaagttgttattaacacaaaatgaagcaaac
attgctgggactcgttacaatgtccctctagttaattcacttgtcctttacgttggcatg
caggctgtgcaacagttgcagcaaaacaaggtgaatgcatcagcaccagcacaaattaac
caaagtcaaatggatatattccaaattgaaacagctactgagatgttcagaaaccttgta
atgactatggacacagaaggtcgctaccttattctcaatgcgattgctaaccagcttcgc
tatccaaatagccatacccactacttttccttcatcattctgtacttgtttgctgaggca
acacaggaaattgtccaagagcagataacaagggttcttctggaaaggttaattgtcaat
cggccgcatccttggggattactcattactttcattgagcttataaagaacccacgctac
agcttctggactcgatcctttacacactgtgctcctgagatagagaagctttttgagtcg
gttgcaaggtcctgtggaggtaaaggcgcggacgatggaatgggtctagcggacggaggc
cactag
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integrated database retrieval system
