Sorghum bicolor (sorghum): 8062207
Help
Entry
8062207 CDS
T01086
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03020
RNA polymerase
sbi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
8062207
09124 Replication and repair
03420 Nucleotide excision repair
8062207
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sbi03021
]
8062207
03400 DNA repair and recombination proteins [BR:
sbi03400
]
8062207
Enzymes [BR:
sbi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
8062207
Transcription machinery [BR:
sbi03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
8062207
DNA repair and recombination proteins [BR:
sbi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
8062207
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
8062207
NCBI-ProteinID:
XP_021304137
LinkDB
All DBs
Position
1:complement(12448267..12456483)
Genome browser
AA seq
1233 aa
AA seq
DB search
MEDDEYEEGMEMGYGGHQQHGGGHAGYGADEDDEMGYGGGGGDGDGDGEEMEEEADGDPD
LRDEIGQDDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG
RQAEFAETLHKISFGQIYLSKPMMTEADGETATLFPKSARLRNLTYSAPLYVDVSYRVMK
KGHDCEEVTETADYPKVFIGKVPIMLRSSYCTLYQQSEKDLTELGECPYDQGGYFIINGS
EKVLIAQEKMSTNHVYVFKKRQPNKFAYVAEVRSMAENQNRPASSMFVRMLSRAGAKGGS
SGQYIRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVI
QNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHR
LLMCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVNL
QFAIKAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGRE
GKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTEN
FEEISPAVIPQAAKIFVNGCWVGIHRNPDLLVKTLRRLRRQIDVNTEVGVVRDIRLKELR
LYTDYGRCSRPLFIVEGQRLLIKKAHIIALQHRETPDEGWHELVSKGYIEYIDTEEEETT
MISMTISDLHNARHNPEDAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMG
KQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYN
QEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEEFGRPNRENTMGMRHGSYDKLD
DDGLAPPGTRVSGEDVIIGKTSPIPQDDAQGQASRYSKRDHSTSLRHSESGMVDQVLLTT
NADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHA
IPSRMTIGQLIECIMGKVAAQMGREGDATPFTDVTVDNISKALHRCNYQMRGFETMYNGH
TGRKLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERD
CMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIP
YACKLLFQELMAMAIAPRMLTHDMKTGKDQKKR
NT seq
3702 nt
NT seq
+upstream
nt +downstream
nt
atggaggatgacgagtacgaggaggggatggagatgggctacggcgggcatcagcagcac
ggcggcggccacgcggggtacggcgcggatgaggacgacgagatggggtacggcggcggg
ggcggggacggggacggggacggggaagagatggaggaggaggcggacggggaccccgat
ctgcgggatgagatcgggcaggacgacgcctgggccgttatctccgcttacttcgaggag
aagggcctcgtgcgccagcagctcgactccttcgacgagttcatccagaacaccatgcag
gagattgtcgatgagtcagctgacatcgagatccgccccgagtcgcagcacaaccctggc
cgccaggctgaatttgccgagactctgcacaagatcagctttggtcaaatctatctcagc
aagccaatgatgactgaagccgatggagagacagctactttatttccaaaatcagcaagg
ctcaggaacttgacatactctgcaccactgtatgttgatgtgtcatacagagtaatgaag
aaaggacatgactgtgaggaagttacagagactgcagactatccaaaagtgtttattggg
aaggttccaataatgttgcgttctagttactgcacactgtatcaacaatctgagaaggat
ctcactgaacttggggagtgtccttatgaccaaggtggttatttcattatcaatggaagt
gaaaaggttcttattgcccaggagaagatgagcaccaaccatgtctatgtttttaagaag
aggcagcctaacaaatttgcatatgtggctgaagtccgttccatggctgagaaccagaac
agaccagccagcagcatgtttgtacggatgctttcgcgagcaggagcaaaagggggatca
tctggtcaatatattcgtgctactctgccttatattcgtgcggacattcccattatcatt
gtatttcgagcattaggatttgttgcggacaaggatatactggagcatatttgttatgac
ttctctgatacacaaatgatggaattgctacgcccatctctcgaggaagcttttgtcatt
caaaatcaacaggttgctctggactacattggaaaacgtggtgcaacagttggtgtcact
cgagaaaagagaattaaatatgcaaaggaaatacttcaaaaggaaatgttgcctcatgtt
ggtgttggggaattctgtgaaactaagaaggcatactattttggatatattattcaccgc
ctactgatgtgcgctcttggtcgaagagctgaggatgaccgagatcattacggaaacaaa
agattagatcttgctggtccactgcttggtgggctgtttagaatgcttttcaggaagtta
acaagggatgtgagatcttatgtgcaaaagtgtgtagataatggaaaggaagttaatttg
caatttgctatcaaagcaaaaactatcaccagtggcttgaagtactcccttgctactgga
aactggggacaggctaaccaagctggaaccagagcaggggtttctcaggtgcttaatcgc
ctcacctatgcttctacactttcacatctccggaggctgaactctcccattgggcgtgaa
ggaaaattggcaaaaccccgccagttgcataattcgcattggggaatgatgtgtcctgct
gaaacaccagaaggacaggcttgtggcttggtgaaaaatcttgccttgatggtatatatc
actgttggttctgctgcgaatccaattttggaatttttggaggagtggggcacagaaaat
tttgaggagatatcaccagctgtcattccacaagctgctaaaatttttgtcaatggttgt
tgggttggaattcataggaaccctgacctgttggttaagactcttaggcgtctaagaaga
cagattgatgtcaacactgaagttggtgtggttcgtgatatccgtcttaaagaacttcga
ctctacacggattatggacgctgcagtcgtccattgtttattgttgagggtcagaggctg
ctcatcaagaaggcgcatataatagctttgcaacatagggagactcctgatgaaggctgg
catgaattagtctcaaaaggatatatagagtacatagatactgaagaagaggagactacc
atgatctccatgaccataagtgaccttcataatgcaaggcacaacccagaggatgcttac
tctgaaacttacacacattgtgagattcatccttcattgatacttggagtttgtgcatcg
attattccttttcctgaccacaaccagtcacctcgtaatacatatcagtctgctatggga
aagcaagccatgggaatttatgtcaccaattatcagttaaggatggacactttggcctat
gttctatactacccacaaaagcctctagtcactacccgtgctatggaacatttgcacttc
agacagttaccagctggcattaatgcaattgttgctatcgcttgttattctggatataat
caagaagattcagttattatgaatcaatcttccatagatcgtgggttcttccgatcacta
tttttccgctcttacagagatgaggaaaagaagatgggtacacttgtcaaagaggaattt
ggtcgtccaaatagggaaaatactatgggaatgcgtcatgggtcatatgataaactagat
gatgatggccttgcaccacctggaacaagggtctcaggggaagatgtcattattgggaag
acatctcctattccacaggatgacgctcaagggcaagcttctagatactcgaagcgtgat
catagtacttctctgcgtcacagtgaaagtggcatggtagatcaggttctgttaacaaca
aatgcggatggtctaagatttgtcaaggttaggatgcgatctgttcgcataccacaaatt
ggagacaagtttagcagtaggcatgggcaaaaaggaactgttgggatgacttacactcaa
gaggatatgccatggacaatcgaaggcatcacacccgatattattgtgaatccacatgct
attccatcccgtatgactattgggcagctgattgagtgcattatgggtaaagttgcggcc
cagatggggagggaaggcgatgccactccattcaccgatgtgactgtggataacatcagc
aaagctcttcatagatgtaattatcaaatgcgtggatttgaaaccatgtacaatggtcac
actggaagaaaactgactgcaatgattttcctgggtcccacgtattaccaaagactcaag
cacatggtggatgacaaaatacattctagaggacgtggtcctgttcagatactcacccgg
caaccagcagaggggcgatctcgtgatggtggtctccgctttggagaaatggaaagggat
tgtatgatcgcacatggagcagctttcttccttaaggaaaggctgtttgaccagagtgac
gcatacagagtccatgtatgcgagaaatgtggtctcatcgcaattgctaacctaaagaaa
aactcgttcgaatgtaggggctgcaagaacaagactgacattgtccaagtacacataccc
tatgcttgtaagcttctgttccaggagcttatggcaatggccattgctcccagaatgctt
acccatgatatgaagacagggaaggatcagaagaagcgctga
DBGET
integrated database retrieval system
