Sorghum bicolor (sorghum): 8069957
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Entry
8069957 CDS
T01086
Name
(RefSeq) nuclear pore complex protein NUP160
KO
K14303
nuclear pore complex protein Nup160
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
8069957
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbi03019
]
8069957
03036 Chromosome and associated proteins [BR:
sbi03036
]
8069957
Messenger RNA biogenesis [BR:
sbi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
8069957
Chromosome and associated proteins [BR:
sbi03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
8069957
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NUP160_helical_2
Beta-prop_Nup120_160
TPR_NUP160_120_M
HEAT_Nup120
TPR_Nup160_C
Beta-prop_WDR35_2nd
NUP160_helical
Motif
Other DBs
NCBI-GeneID:
8069957
NCBI-ProteinID:
XP_002451524
LinkDB
All DBs
Position
4:3099623..3122151
Genome browser
AA seq
1522 aa
AA seq
DB search
MASAGVADADDGEAAMAAPAARRIVGAEVPIPGLDKLRWIDLTIPSSSAAAPASPSDPFV
CVPPRAASGCHIISSGDSQYYLSWRIHEEHPNVLEVIELSASKEFPTFGLRLVFHEALCP
FAFLCEREGRRQGELVYMLYVLTVSGVALLCHLRSPFSYVSGSVLHQDDIIEFNLQTQAQ
SAKVTAVTAKPGCIVIGRQDGSICSYSLGRLALNSPGFSNELRDDAGIGRLWNLVSRTKN
VGPVQDIVATVVNERDLLFVLHLDGHLRIWDNHMKLLNYSVHSNDIEGHPSRLWVGEADD
DQELISLAILHQNTVVQDCDYVAVYTFGFSAVERFMFSSEPSVSTIPLLEGKLVDLKIAT
DKLWILKEFGSMVYEILQYDTETEKICCYVLQEDAISEQLFQSSDNALDDLVWTADSMFT
SLKEQAFTFISSMFMRRLLQPGVNHCSALRETLLEHKRFLSDSEFQSLTANGLRKEIISI
IEQEGSSQAASATAYHWKQFSARYLHNWCWNNKPYGLLLDTKNEVFGLIRKGSFSLFRCL
EGVEMLIYGSSEEFPNIDDLGMNLLDDISDFELLKEVLRCMGHIHHLLGRSSTAVYYECL
ISSIISSDEIASHIVKILETGFSPQSSSSLITLLGTDTYVERRQAAHRSQRKFSVEMLLS
FHKLQSRSASWSAVFDVIEKFMKCLNTNMSIQEHGSKRVCNVNSVLLVQATSQVARTMFE
CAFDLFLFLSYLVGVGGQVSLLQSDVARIKLKLFPTIQDILGQWIVLHFVGTSPTSPPTI
DDFSYHLSSLQLGKADELSLHRKLGCSDFTLACLLDFPKSPEGDVMSPCFPSPAEVINLV
RRFSSLIMCGRNFECAQTFLGYTINLSAVLIRHGQYEAAKNLLGILETYLNNGEVSHTGQ
DADTACAAYLHLNGFCLLMLAHDEANIILRESKVHDAIRCFFRAASGYEAPKVLQNFSLE
TGFQVSGESRSISLWRLNYYEWAMQIFEQHSMSEGACQFALAALELVDIIDGLDNGIEAE
GLPETAAMIKGRLWANVFKYSLDLKHFRDAYCAIVSNPDDDSKYICLRRFIIVLCDLGET
KVLCNGEIPFTDLVEKVEQELFWKAERSDLSSRPNLYKVLYSFEAHRNKWRKAAVYMYRY
YVRLNREGNAGGSHQLPHVLQERLHALSAAINALQLVDPSFAWLDSICEADDQISPSKRP
RNLLMENLAFGTDSELSRLQFCVDIEILEKEYILTEAQYMLSTLKSIFDFSERQSMESLM
DILIDEKLYDLAFTVVLKFWKESGMKKQLERVFSVIAQQCCPNRADNKSRKSLTDSQQVL
LLPSSENDAWEINNKSIPVTQQLQGSNHWEILELYLDKYKDLHPRLPVIVAETLLYTDPE
IELPLWLVQMFKTNKAGNKISWGMSGKEADPAALFRLYINYGRHAEATNLLVEYLESFAS
SRPVDLLHRKQMSATWFPYTAVERLWCQLGEMQRAGHSVDQCDRLKKLLHGALMSHLQQV
VVDSGDVLSSVGDGQGMEGQSR
NT seq
4569 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccgccggcgtagccgacgccgacgacggcgaggcagccatggccgcccccgct
gcccggaggatagttggcgctgaggttcccatacccggcttggacaagctgcggtggatc
gacctcaccatcccctcctcctccgccgccgcgccggcgagcccctccgatcccttcgtc
tgcgtgcccccgcgcgccgcctcggggtgccacatcatctcttcgggcgattctcagtat
tacctctcgtggaggattcacgaggaacacccaaatgtgctagaggtcatcgaacttagt
gcctccaaggagttccctacctttggactgcggttggtcttccatgaggcgctatgtcca
tttgcctttttatgtgaaagagagggtcgcaggcaaggggagcttgtatatatgctatac
gtgcttaccgtttctggagttgctctcttgtgccatttacgcagcccattttcctacgta
tctggttcagtgctgcatcaggatgatataattgagtttaatctccaaactcaagctcag
agtgcaaaggttacagcggtaacagcgaagccaggatgtatagtgattggtcggcaagat
gggtccatctgttcttacagtcttggcagattagccctgaactcaccaggtttctcgaat
gaactacgagatgatgctgggattggccgtttatggaatcttgtgtcaagaacaaagaat
gtgggtcctgtgcaggatatagtggcaactgttgtaaatgaaagggacctgttatttgtt
cttcatttggatggacacttgcgcatatgggataatcacatgaagcttctcaactatagt
gttcactcaaatgatattgaaggccatccttccaggctatgggttggtgaggctgatgat
gatcaagagttgatatctttggcaattctgcatcagaacactgtggtccaagattgtgat
tatgttgctgtgtataccttcggtttttctgctgtggaaaggttcatgttctcttctgaa
ccttcagtttctactatacctttgctagaggggaagcttgtggacttgaaaatagccacg
gataagctttggatacttaaagaatttggctccatggtatatgaaatattacagtatgac
accgaaactgagaagatttgctgttatgtgctacaagaagatgctatcagtgaacagttg
tttcaaagttctgacaatgcattggatgatttggtctggacagctgattcaatgttcacc
tccttgaaggagcaggctttcacttttatttcatccatgtttatgcggaggctacttcaa
ccaggagtaaaccactgttctgccctacgtgaaaccttactggagcacaaaaggttccta
tcagattctgagttccagtcacttacagcaaatgggctacgaaaagagataatatctatt
atagaacaagagggaagttcacaggcagcaagtgctacagcttatcactggaaacaattc
tctgcacggtacctccacaattggtgctggaacaataagccatatgggttgcttcttgat
actaaaaatgaagtgtttggtttaataagaaagggttcattttctctattccgttgtttg
gagggtgtggaaatgcttatttatggttcatctgaagaatttcccaatattgatgacctt
ggaatgaacttattggatgatatatctgattttgaactcctcaaagaggtcctcagatgc
atgggccatatacaccatttgctggggagatcttccacagcagtatattatgaatgccta
attagttctattatatcatctgatgaaattgcttcacatatagtaaagattctagagact
ggttttagtcctcaatcatcctcatccctcattacattacttggaacggatacttatgta
gaaagaaggcaggcagctcacagaagtcaaaggaagttttctgttgagatgttactatct
tttcataagttgcaatcaagatccgcgtcctggtcggcagtattcgatgtgattgagaag
tttatgaagtgtttgaacacaaacatgagtatacaagagcatggatcaaagagagtttgt
aatgtaaattctgtgttactagttcaagctacttcacaggttgcaagaacaatgtttgag
tgtgcatttgatctgtttctgttccttagttatctggttggtgttggtggccaggtctcc
ttattgcaaagtgatgttgccagaataaaattgaagttgttcccaacgattcaagacata
ttgggacagtggattgttctccactttgtaggaacctcaccaacctcaccaccaaccatt
gacgattttagctatcatctttcttctcttcagcttggtaaagcagatgaactgtctttg
cacagaaagcttggctgctctgattttactttggcttgtttacttgattttccaaaatct
cctgaaggggacgttatgtcaccttgttttcccagtccagcagaagtgatcaatctagta
aggaggtttagtagtttgattatgtgtggaagaaattttgagtgtgcacagactttcttg
ggatacacaattaatctatcagctgttctcatccgacatggtcagtatgaagctgctaag
aatctgctgggaattctggaaacatacttgaacaatggagaagtatcccatactggtcaa
gatgcagatactgcatgtgcagcataccttcatctcaatggattttgccttctgatgctt
gcacatgatgaagcaaatattattttgagagaatccaaggttcatgatgctatccgatgc
tttttcagggctgcgtccgggtatgaagctccaaaggttttgcagaacttttcattggaa
acagggtttcaagtttctggggaatctagatctatttctttgtggagacttaactactat
gagtgggcaatgcaaatttttgagcaacactccatgagtgagggggcgtgccaatttgct
cttgctgctcttgagctagttgatatcattgatgggttagataatggaattgaagctgag
ggccttccagagaccgcagcaatgattaaaggacggttatgggctaatgtattcaagtac
agcttggatctgaaacactttcgagatgcatattgtgcgatcgtctcaaacccggatgat
gatagcaaatacatctgtttgaggcgtttcatcatagtcctttgtgatcttggggagaca
aaggttctttgcaatggggagattccattcactgacttggtagagaaagtggagcaagag
ctcttctggaaggctgaacgctcggatctgtcttctagaccaaatctctataaggttctg
tattcatttgaagcacatcggaacaaatggaggaaagcagctgtatacatgtacaggtac
tatgttagattgaatagagaaggtaatgcaggtggcagccaccaacttcctcatgtgttg
caagagaggttgcacgctttatctgctgctatcaacgcattgcagcttgttgatccctca
tttgcatggctcgactctatttgtgaagctgatgatcaaatttctccaagtaaaagacct
cggaatcttttgatggagaacttggcttttggcacagattctgagctttctagattgcag
ttttgcgtcgacattgaaatccttgaaaaagaatacatattaacagaagcacagtatatg
ctcagcactctgaaatcaatatttgatttttcagaaaggcagtcaatggagtccctgatg
gatattcttatagatgagaaattgtatgacttggccttcacagttgtgctcaaattttgg
aaggagtcaggaatgaaaaagcaattggagcgtgtcttttcagtcattgctcagcaatgc
tgtccgaacagagcagacaacaaatcaaggaaaagtttgactgacagtcaacaagtgcta
ctcctgccttcttctgagaatgatgcatgggagatcaacaataagagtattcctgtcacc
caacaactgcaggggagcaaccactgggaaatccttgaactatatttggataaatacaaa
gatctgcatcctaggttgccggtcattgttgctgagacacttctttataccgatcccgag
attgagctaccactttggttggttcagatgttcaagactaacaaggcagggaacaagatc
tcctggggcatgtctgggaaagaggcagatcctgccgccttattcagactatacataaac
tacggacgccatgcagaagctactaacttgctggtggagtatttagagtcgttcgcatca
tcgaggccagtggaccttctccaccgcaagcagatgtccgccacttggttcccgtacacg
gctgtggagaggctgtggtgccagctgggtgagatgcaacgcgccggccacagcgtggat
cagtgcgaccggctcaagaagctgctgcatggagccctgatgagccacctgcagcaggtt
gtggtcgactcgggggacgtgctgtcgtcagttggagatgggcaggggatggagggccag
agcagatga
DBGET
integrated database retrieval system
