Sorghum bicolor (sorghum): 8081555
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Entry
8081555 CDS
T01086
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
8081555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbi03019
]
8081555
Messenger RNA biogenesis [BR:
sbi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
8081555
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
8081555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
8081555
NCBI-ProteinID:
XP_021307418
LinkDB
All DBs
Position
1:complement(80573694..80594350)
Genome browser
AA seq
2416 aa
AA seq
DB search
MIPVGADVAAELRLLLECATDSNFDSIRRELCQLVDSGLDGCILVLRVCLNQVLLNAGEV
KNLQLQQKLLSDVFRYCLHKTCFATSFCEVLTTIALTNDFLESLSNLLELSVAEKVGVGL
ALSDSEDSEIKQKGQLFSIAQIEELCTNPIQSVSNDQIHEIVVFLHQSDGLSKHMDTLNN
VISLLKVTETPFFAPVPNGDFDRQPNPSRHLDMYFGSTDDDFESLLSEIGKEISMADIVA
ELGYGFTVDNTHCKEILSIVEPLDDVAVSKLLGAVVGTHSGLGEAHNTHATFVSAIRNSH
TNDSPQLTKWNTDVLVDSINELAPSTNWVRVMEYLDHEGFNIPDETGFYLLMSIYARACK
DPFPLHAVCGSLWKNTEGQISFLKHAVSAPPDKFTFAHSSRHLALQDLAGPSQGNHAWFC
LDLLEVLCQLAEVGYTASVRSMLEYPLGHCPELLLVGLSHVSTVYNLLQYEVLSCVFPAV
LKDPTKRNVVNYLWHTNPYFTLRGFVDAHSDPDCLLRIVDVCHDLKILSSVLDSTPFAFS
IKMAAAALRKDYSHLEKWLTEKLSLYGKGFVEECVNFLKATMSNTDYVLDGTTQPQSIVK
NIYWESCYVFIKVLQSHSGQLLSDVILDEIRKLCSLYESRNPSSVRELISSEGGSDDIEV
EANAYFQHMFSGQISVDSMIQMLGRFKESTDKREVSIFNCMISNLFEEYKFFPKYPDKQL
KIAAVLFGSLIKHQLVAHLALGIALRGVLDALRKSVDSKMFMFGTTALEQFMDRVIEWPQ
YCNHILQISHLRGTHFEMVSAIERALAKISSSQNEPNVGNLLSAEQHVSGSSSIEGIEVS
ESSWLMGTIPSQLGRPLSSSPLQHRQQGLLGERSKVSLSSLNKSIVSSQPPLASSSADLT
INPKATAPPSLLASPHQSTSVSTSVHTGFLRPRSTSGLPRQPSYTTGFGTALNIETLVAA
AEQRDTPIETPPPEVQDKILFMINNISISNMEAKAKEFNEVIQEQYYPWFAQYMVMKRAS
IEPNFHDLYLKFFDKVNSKSLNKEILKATYENCKVLLRSDLIKSSSEERSLLKNLGSWLG
KFTIGRNQALRAKEIDPKSLIVEAYEKGLMIAVIPFTSKILEPCHSSIAYRPPNPWTMGI
LSLLAEIYNLPNLKMNLKFDIEVLFKNLTVDMKDVKPTSLLKDRLREVEGNPDFSNKDVT
ASQTPVVAEVPSGTIPSLTHMEPEINITSRAMSLPNILNQYAAPVRLPTNSTVEDDKVAL
MMPEQVPSLTQVSPAQTQSPSPSPFSVNQLMAAIPRDEIRFKINPKLGSLGPQLQYSKIM
DLALDKANREIILPVIQRSVTIATRTTKELILKDYALESDNSTITRSAHLMVATLAGSLA
HVTCKEPLRVALYTNLRNLIQNLMSGTETIEQLIHMLVNDNLDLGCAIIEAVATRQAEEL
IDVEIAQSFSQRKQREAGGPAYHDTFAYAQGPFARVPEALRPKPGHLSTSQQRVYEDFVH
VWNPHSQNVGATGSGLSGGTTASSTLGVPRAYSPNSAPVSSSNLSTIHISGLTSITQPTE
LGSEESVTGITQFSSNPAQVGASESSVLLGGTIGAASTFSPLASNDLPVSAMTVTTNEIS
AMVPPPSTSATDRLGSILPEPLNTGDALERYQQVAQKLEALIVNDGKDVEIQSVIAEVPD
ILRRCVSRDEAALAVAQKVFKSLYDNTSNSTYVSWLLATLVAIRDVCKLVVKELTSWVIY
SDEEKKFNIEIIFGLIRSELLNLGEYNVHLAKLIDGGRNKVATEFAMSLVQTLITQDSVG
VSELYNVVEALSKLARRPGSPESLQQLIEIARNNVSTTTGFVVGKDEKVKLPKDKKVLAT
RANKEDSTANEITLADPNQVAVLFSEWCQMCNHVSASDAAYSRFVSQLQQDGLLKGDDIS
ERFFRILTELAVTHSLVSEQIVAPGGSSQQSPQQPHISYFSVDSYAKLVVMVLKYSSLEI
TPNKASILSKILSVTVRTIQKDAEEKKASFNPRPYFRLFINWLYDLTTTDGHHDGSNFQI
LTAFANAFHMLQPLRVPAWSFAWLELVSHRSFMPKLLMCNSQKGWPFFQRLLVALFKFME
PYLRNAELPEAVDLLYKGTMRVLLVLLHDFPEFLCDYHFSFCDVIPSSCIQMRNVILSAF
PRNMRLPDPSTPNLKIDLLAEISIAPRIMSDVDGALKSKQLKTEVDEYLKRPEGSSFLSD
LKQKLLLPQNEATVAGTRYNVPLINSLVLYVGIQAVQQLQLNKANASASVQQINHMPPMD
IFQIETATEMFRNLITSLDTEGRYLLLNAIANQLRYPNSHTHYFSFIILYLFAEATQEII
QEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYNFWNRSFTHCAPEIEKLFESVARSC
GAKAVDEGISVHDGSH
NT seq
7251 nt
NT seq
+upstream
nt +downstream
nt
atgatccctgtcggcgccgatgtcgctgcggagctgcgcctcctgctcgaatgcgccacg
gactccaacttcgactccattcggcgcgagctttgccagttagttgacagtggcctggat
ggatgcattttggtgctccgagtatgtctgaatcaagtgttgctgaatgctggggaggtc
aagaacctccagttgcaacaaaagcttttatctgatgttttcagatattgtttgcataag
acatgcttcgcaaccagtttttgcgaggtgctgacaacgatagccttgacgaatgatttt
cttgaaagcttgtcaaatctgctggaactctcagttgctgagaaagttggtgttggactt
gcactctcagattctgaggactcagagataaagcagaaaggacaattgttttcaattgct
caaattgaagagctgtgcacgaatcctatccaatctgtatcaaatgatcaaattcatgaa
atcgtcgtgtttctgcatcagtctgatggcctgtcgaagcatatggacactttaaataat
gttatatctctactaaaggtcacagagacaccattttttgcacctgtcccaaatggagat
tttgatagacaaccaaatccttcaagacatttggatatgtactttggtagcacagatgat
gattttgaatcgcttctgtctgaaattgggaaagaaataagcatggctgacattgtagcc
gagttgggttatggatttactgttgacaacactcattgtaaggaaatactttccattgtt
gagcctcttgatgatgtcgctgtatctaagttgcttggggctgttgttggcactcatagt
ggtcttggagaggcccataacacacatgcaacatttgtatctgctattcgtaatagccac
acgaatgactcacctcagcttactaaatggaacacagatgttcttgtggattcaatcaat
gaacttgccccaagtacaaactgggtgcgggtaatggaatatcttgatcatgagggtttc
aatatacctgatgaaacaggcttttatctattgatgtctatatatgcacgtgcttgcaag
gatccatttccacttcatgctgtttgtgggtcattgtggaaaaacacagaaggccagata
tcgttcttaaagcatgcggtttctgctccacctgataaatttacatttgcacattcttcc
aggcacctggcattacaggatttggcaggtcctagtcaaggcaatcatgcttggttctgc
cttgaccttctagaagttttatgccaactagctgaagttgggtacactgcatctgtacga
tcaatgcttgagtatccactgggacattgccctgagctcttacttgttggtcttagccac
gtcagtaccgtgtataatctcctccaatatgaagtactgtcctgcgtatttcctgctgta
ctgaaggatccaacaaagcgcaatgtagtgaattatctctggcatacaaacccatacttc
acgcttcgaggttttgttgatgctcatagtgatccagactgtttgctaagaattgttgat
gtttgtcatgatttgaagattctgtcttctgtccttgattctactccatttgcattttct
attaaaatggctgctgctgccttgaggaaagactatagtcatcttgagaaatggctaact
gaaaagttatctctatatggaaaaggttttgttgaggaatgtgttaatttcctgaaagca
actatgagcaacacagattatgtcttagatggcacgacacaaccccaatctattgtcaaa
aacatatattgggagtcttgttatgtcttcataaaggttctccaatctcactcggggcag
ctcttgtcagatgtaatactggatgagataaggaaactgtgttctctgtatgaatcaagg
aatcctagctctgtaagagagcttattagttcagagggagggtcagatgacattgaagta
gaggctaatgcatattttcaacacatgttctctggacagataagcgttgactccatgata
caaatgcttggacgcttcaaagaatctacagataagagggaggtatcgattttcaactgt
atgatctcaaatctttttgaagaatacaagttctttcccaagtatcctgataagcagctt
aagatagcagctgttctgtttggatctcttattaaacatcagcttgtggctcacctggcg
cttggaattgctctacgtggtgtcctcgatgccctgcgcaaatctgttgattcaaagatg
tttatgtttggtacaacagcactggagcagtttatggatcgtgtcatagagtggccacaa
tactgtaatcacatattgcagatctcgcatcttcgtggaacacattttgaaatggtttct
gctattgagagagccctagccaaaatctcatcaagtcaaaatgagccaaatgttggcaat
ctgctttctgcagagcagcatgtttctggttcatcatccattgaaggcatagaggtgtct
gaatcatcatggctgatgggtaccatcccaagtcaattaggaaggcctctttcttcttct
cctttgcaacataggcagcagggtcttcttggggagaggtctaaggtttctctgagttca
ctgaacaagagcattgtatccagtcagcctccccttgcttcatcatctgctgatttgact
attaatccaaaggcaactgctccaccctctttattagcttcacctcatcagtcaaccagt
gtttcaacgagtgtgcatactggatttctgcgtcctcgaagtacctcaggattgcctagg
caaccttcatatactactggatttgggactgctttaaatatagagacgcttgttgctgct
gcagaacaaagagatacaccaattgagacacctccacctgaagttcaggacaaaattctt
tttatgatcaacaatatatccatctcaaacatggaagctaaggcaaaggaatttaatgag
gtcatacaagaacagtattatccttggtttgcacaatacatggtcatgaaaagggcaagc
attgaaccaaattttcatgatctgtatttgaagttctttgataaagtaaactcaaaatcc
ttgaacaaggaaatactgaaagctacatatgagaactgcaaggtcttgttaagatcagac
cttatcaaatctagttctgaggagcgctccttgctaaaaaacttaggcagctggttggga
aagttcaccattggtaggaaccaggcactaagggctaaggagattgacccaaaatctctt
attgtagaggcatacgagaaaggattgatgattgcggtcataccattcacttcaaagatt
cttgaaccttgccactcaagtattgcatatcgtcctccaaatccttggaccatgggaatt
ctaagtctacttgctgaaatatataatcttccaaacctcaagatgaatctgaaattcgat
attgaggttctatttaagaaccttactgttgacatgaaggatgtgaaaccaacttccctg
cttaaagatcgtctgcgagaagtcgagggaaatccagatttttccaataaagatgttact
gcatctcaaacccctgtggttgcagaagtcccatcaggaaccatcccatcactaactcat
atggaacctgagatcaatatcacatcccgagctatgagccttccaaatatacttaatcag
tatgctgctcctgtccgtctacctacaaacagcacggtagaggatgacaaagttgctctg
atgatgcctgagcaagtgccctcattgacccaggtttcgccagcacaaacacaatcacca
tcaccatctccattctctgttaatcagcttatggcggctattccacgtgatgagatacgc
ttcaaaataaatccaaagcttggctcccttggtccacaattgcagtatagcaaaattatg
gatttggctctggataaggctaacagggagataatactccctgttattcaaagaagtgtg
acgatagcaacccgaactacaaaagaacttattctgaaggattatgcactggagtctgat
aacagtacaataactcgatctgcacatttgatggttgcaacattagctggaagtctggca
catgttacttgcaaggaacctcttcgtgtcgcactatataccaatcttcggaatctcatt
caaaaccttatgagcggcactgaaactatcgagcaacttattcacatgctagtcaatgat
aatttggatcttggctgtgccatcattgaggctgtggcaacacgtcaggctgaagaattg
attgatgtagaaatagcgcagtcattttcacaaaggaaacaaagagaggccggtggtcct
gcatatcatgacacctttgcttatgctcaagggccgtttgctcgtgtacctgaagcacta
cgtcctaagcctgggcatttatctacttctcaacaaagagtgtatgaggactttgttcat
gtttggaatccccatagtcaaaatgtcggtgctacaggttctggtctgtctggtggcact
actgcctcgagcactcttggtgtacctcgagcttacagtccaaattcagcaccggtatcc
tcaagtaatttgtcaactattcatataagtggactaacatctattactcagccaacggaa
ctggggtctgaggaatcagttactggtatcacacaattttcgagtaatcctgcccaagtt
ggagcaagcgagtcttctgtcctacttggtggaaccattggtgctgcatctacattttct
ccattggcatctaacgaccttcctgtcagtgcaatgactgtcacaaccaatgaaataagt
gctatggtgccacctccatcaacatctgctactgatcgcctgggatctattttacctgaa
cctttgaatactggggatgctttggagagataccaacaggttgctcaaaagctggaagct
ttgattgttaatgatggcaaagatgtggaaattcagtctgttattgcggaagttcctgat
atcttacgtaggtgtgttagccgggatgaggctgcattagcagtagcacaaaaggttttc
aaaagtttgtatgataacacgtcaaatagtacttacgtctcttggcttctagcaacctta
gttgcaatacgagatgtctgcaagcttgttgtcaaagagctaacaagttgggtaatatat
tcagatgaagagaagaagtttaacattgaaatcatttttggccttattcgttccgagttg
ctgaatcttggggagtacaatgttcatttggcaaagctaattgatgggggaagaaataag
gttgcaacagaatttgcaatgtctcttgtccaaacattgattactcaagattctgttggc
gtctcagagctttacaatgttgttgaagcactgtcgaagcttgcaaggagaccaggttca
cctgaatcgttgcaacaattgattgaaattgcaaggaataatgtgagcaccactactggt
tttgttgttgggaaggatgaaaaggtcaaactgccaaaggataaaaaggttctagcaacc
cgggcaaacaaagaggatagcactgctaatgaaattacactagctgatccaaaccaggtg
gcagtcctgttttctgagtggtgtcagatgtgtaatcatgtaagtgctagtgatgcggcc
tacagtcgttttgtctcacagttgcagcaggatggtctgctgaagggagatgatatctct
gaacgcttctttcgtattctcacggaacttgctgttacacactctctagtctccgagcaa
attgttgctcctggtggatcatctcagcaatcaccacagcaacctcacatttcatatttt
tccgttgattcatacgcaaagcttgtggttatggttctcaagtactcttcattggagata
acaccaaataaagccagtatactttccaagattctatctgttacagtgagaaccattcag
aaagatgctgaggaaaagaaagcttcatttaatcctcggccatactttcgattgtttata
aattggctctatgaccttactactaccgatggccaccatgatggttctaattttcagatt
ttgactgcatttgcaaatgcattccacatgctacaacccttgagagttcctgcctggagc
tttgcttggcttgagctggtgagtcacaggagcttcatgccaaaactgctgatgtgcaat
tcacagaaaggttggccatttttccagcggctgcttgttgctcttttcaagttcatggaa
ccatatttgagaaatgctgaactcccagaggcggtggaccttttatacaaaggaactatg
agagttctgcttgtactactgcatgattttcctgaatttctttgtgattatcacttcagt
ttctgtgatgtgattccttcgagttgcatacaaatgcgcaatgtcattcttagtgctttt
ccacgtaacatgagattgccagacccttctactcctaacctaaagattgatttgttggct
gaaatttcaatagcaccacgaatcatgtcggatgttgatggtgccctcaaatcaaagcag
ttgaagactgaggttgatgaatatctcaagaggccggagggctcttcctttctaagtgac
ctgaagcaaaaattgctgctgcctcagaatgaagcaactgttgccgggacacgctacaac
gtgcctctgatcaattcacttgttctttatgttggcatccaagctgtgcaacaactgcaa
ctgaacaaggctaatgcatcagcatcagtacagcagattaatcatatgcctccgatggac
attttccagattgaaacagctaccgagatgttcagaaatcttataacaagtttggataca
gagggccgctaccttctgttgaatgcaatcgctaaccaactgcgctatcccaatagccat
acgcactacttctccttcatcattctgtatctatttgctgaggctacccaggaaattatc
caggagcaaataacgagggttcttctggagcgtctcatagtgaaccgccctcatccttgg
gggttacttattactttcattgaattgataaagaatccgcgttacaacttttggaaccgg
tcttttacacactgtgcacctgagattgagaaactgtttgagtcggtggcaaggtcctgc
ggtgcaaaagctgtagacgaaggaatcagtgtgcatgatggcagtcactaa
DBGET
integrated database retrieval system
