Syngnathoides biaculeatus (alligator pipefish): 133497385
Help
Entry
133497385 CDS
T09681
Symbol
col1a2
Name
(RefSeq) collagen alpha-2(I) chain
KO
K06236
collagen type I alpha
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia04510
Focal adhesion
sbia04512
ECM-receptor interaction
sbia04518
Integrin signaling
sbia04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
133497385 (col1a2)
04518 Integrin signaling
133497385 (col1a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
133497385 (col1a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
133497385 (col1a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sbia00536
]
133497385 (col1a2)
Glycosaminoglycan binding proteins [BR:
sbia00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
133497385 (col1a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
133497385
NCBI-ProteinID:
XP_061669344
LinkDB
All DBs
Position
1:7994881..8009017
Genome browser
AA seq
1352 aa
AA seq
DB search
MLSFVDTRILLLLAVTSYLATCQSGPRGDKGPRGDRGPQGPDGKDGKPGLPGPAGPAGPP
GPPGLGGNFAAQYAKAPDPPPGPMGMMGNRGPPGPPGPPGPQGHTGHPGEPGEPGQTGPV
GPRGPPGPQGKAGEDGNNGRPGKPGDRGAPGVQGARGFPGTPGLPGMKGHRGYNGLDGRK
GEPGAAGVKGEAGAHGAAGRPGLVGPRGLAGERGRAGPAGPVGARGADGNTGPAGAAGPA
GAAGAPGFPGGPGPKGEVGPVGATGPSGPQGARGEPGPNGAVGPVGPVGNPGANGLNGAK
GATGAAGVAGAPGFPGPRGGAGPQGPQGAAGPRGLAGDPGVQGVKGDAGAKGEPGSAGPQ
GAPGSQGEEGKRGPAGEIGASGPVGSRGSRGAPGSRGMPGTEGRVGPIGMPGARGATGSA
GARGPPGDAGRGGEPGPAGLRGVSGSPGSSGPPGKEGPSGPAGQDGRTGPPGPTGPRGQP
GNIGFPGPKGAAGDAGKPGDKGATGATGLRGPPGPDGNNGATGPMGVSGGPGEKGEQGPA
GSPGFQGLPGPAGAAGEAGKPGDRGIPGDQGVAGPAGAKGERGNPGAAGSAGPQGPIGIR
GPSGLPGADGGKGEPGVAGVTGAPGHQGATGMPGERGAAGPSGAKGEKGEVGHKGPDGNS
GRDGARGLPGPSGPPGPTGANGDKGESGSFGPSGPAGVRGAPGERGEVGPAGAPGFAGPP
GANGQAGARGERGPAGGKGDVGPAGPAGPAGQAGPAGPSGPAGPTGARGDNGPQGLTGFP
GAAGRVGPAGPAGIVGPPGPAGPAGKDGPRGLRGDSGPTGPAGEQGMVGAPGPAGEKGPS
GESGPAGPPGAPGISGPLGLQGFVGLPGARGDRGSPGGPGAVGEPGRLGPAGPAGARGPA
GNIGMPGMTGPQGEAGREGNPGNDGPPGRPGAAGIKGDRGDPGPAGALGLAGAPGPAGPS
GAVGRTGNRGDAGHSGPAGPAGAAGARGAAGPAGVRGEKGVAGDRGDRGMKGLRGHPGLQ
GIPGPSGPPGDTGPAGAHGPAGPRGPAGPHGPPGKDGRAGAHGTIGPAGTRGAPGHIGPV
GPPGPPGLPGPPGPAGGGYDLSGYDEYRADQPAMRAKDYEVDATIKSLNTQIENLLTPEG
SRKNPARTCRDIKLGHPEWTSGFYWIDPNQGCINDAIRVFCDFTTRETCINAHPESIAKK
NWFRSTENKKHVWFGETINGGTEFTYNDETISSQSMATQLAFMRLLSNQASQNITYHCKN
SVAYMDAESGSLKKAVVLGGSNDVELRAEGNSRFTFSVVEDGCTRHTGEWSKTVIEYRTN
KPSRLPILDIAPMDIGGADQEFGLDIGPVCFK
NT seq
4059 nt
NT seq
+upstream
nt +downstream
nt
atgctcagctttgtggatacccggattctgttgctgcttgcagtaacttcatacctagca
acatgtcaatcaggcccccgaggagacaaaggacctcgaggtgacaggggtccccaggga
cctgatggaaaagatggcaaacccggactccccggccccgctggccccgctggaccccct
ggaccccctggactcggaggaaactttgctgctcagtatgctaaggctcccgatccccct
ccaggccccatgggtatgatgggcaacagaggcccacccggaccccctggaccccctgga
cctcaaggacataccggacaccctggtgagcctggcgagcctggacaaactggtcccgtt
ggtcctcgtggcccccctggacctcagggcaaagctggagaggacggtaacaatggcaga
cctggcaagcccggagatagaggtgcccccggcgttcagggtgctcgtggattccccgga
acccctggacttcccggaatgaagggacacagaggttacaatggtttggatggacgcaag
ggagagcccggtgccgctggagtcaagggtgaggctggcgcacacggagctgctggaaga
ccaggacttgttggacctcgcggtctggctggtgagagaggtcgtgccggccctgctggc
cctgttggtgctcgtggtgctgatggcaacactggacccgctggtgctgctggtcccgcc
ggtgctgccggtgccccaggtttccctggtggccccggacccaagggagaggttggaccc
gttggtgcaactggtccctctggacctcagggcgctagaggagagcccggtcccaatggt
gctgttggccccgttggtcccgttggtaaccctggtgccaatggcctgaacggagccaag
ggagccactggcgccgctggtgttgctggagctcctggattccccggacccagaggagga
gccggacctcagggacctcagggtgccgccggtcccagaggcctggctggagatcccggt
gttcagggtgtgaagggagatgctggtgccaagggtgagcctggtagcgctggccctcag
ggtgcccccggatctcagggtgaggagggcaaacgtggacctgctggcgagatcggtgcc
tccggccccgtcggtagccgtggatccagaggtgctcccggtagccgcggaatgcccggt
actgagggaagagtcggcccaattggcatgcctggtgctcgtggagccaccggctctgct
ggagctcgtggaccccctggagatgctggccgtggtggtgagcctggtcctgctggtctc
aggggtgtctccggaagccccggcagctctggacccccaggaaaggagggaccttctggt
cccgctggacaagacggccgcaccggacctcccggcccaactggacctagaggtcagcct
ggaaacattggattccctggacccaagggagccgctggtgacgctggcaaacccggagat
aagggagctactggtgccactggactgagaggacctcccggccctgatggtaacaatgga
gccactggccccatgggagtctctggcggtcctggtgagaagggagagcagggacctgct
ggatctcctggtttccagggtctgcctggtcccgctggtgctgctggagaggctggcaag
cccggagacagaggtatcccaggagaccaaggtgtcgctggacctgctggtgctaagggc
gagcgcggtaaccccggtgctgctggatctgccggacctcagggacctattggaatccgt
ggaccttctggacttcctggtgctgatggtggaaagggagagcctggcgttgctggagtt
actggtgctcctggacaccagggagctactggcatgcccggagagcgtggagccgctggt
cccagcggagccaagggagagaagggagaggttggacacaaaggacccgatggcaactcc
ggaagagatggtgcccgtggtcttcctggacccagtggaccccctggacccacaggagcc
aacggtgacaagggtgagagcggttccttcggaccttctggccccgctggagtccgtggt
gcccctggtgagcgtggagaggttggacccgctggagcccctggattcgctggaccccct
ggtgctaacggacaagccggagctagaggagagcgtggacctgctggaggaaagggagat
gttggccccgctggccctgctggccccgctggacaagctggacccgctggtccttctggc
cccgctggacctactggtgcccgtggagacaatggacctcagggtctgactggtttccct
ggagctgctggcagagttggccctgctggacctgctggtattgtcggaccccctggccct
gccggtcccgctggaaaagatggtccccgtggtctccgtggagactctggtcccactggc
cccgctggagagcagggtatggttggagctcctggccccgctggagagaagggaccttcc
ggagagtctggacctgctggtcctcctggcgctcctggaatttctggacctcttggtctt
caaggatttgttggtcttcccggagctagaggcgatcgtggtagccctggtggtcccggt
gctgtcggagagcctggtagacttggacctgctggtcccgctggtgcccgtggccctgct
ggcaacattggcatgcctggtatgaccggacctcagggagaggctggacgtgagggtaac
cctggtaacgatggtcctcctggtcgtcctggtgctgctggaatcaagggagaccgtggt
gaccccggtcccgctggtgcccttggtcttgctggtgctcccggacctgctggacccagt
ggcgctgttggaagaactggaaaccgtggagacgctggacactcaggacctgctggacct
gctggagccgctggagctagaggtgccgctggacccgctggagtccgtggtgagaaggga
gttgctggagacagaggagacagaggaatgaagggtcttcgcggacatcctggtctccag
ggaatccccggaccttctggacctcccggtgacaccggacctgctggtgctcatggaccc
gctggacctagaggtcccgccggaccccacggaccccctggtaaggatggtagagctggt
gcccatggtaccattggacctgctggcactcgtggagcccccggacacatcggacctgtt
ggtccccccggacctcccggtctgcctggacctcccggccctgctggtggcggctatgat
ctgtctggatacgatgagtacagagctgaccagcccgccatgagagctaaggattacgag
gttgatgccactatcaagtccctcaacacccagattgagaacctcctcacccctgaggga
tccaggaagaaccctgcccgcacatgccgtgacatcaagcttggccacccagaatggacc
agcggattctactggatcgaccccaaccagggttgcatcaatgacgccatcagagtcttc
tgtgacttcaccacccgcgagacttgcatcaacgcccaccccgagagcattgccaagaag
aactggttcagaagcacagagaacaagaagcacgtctggttcggagagaccatcaacggc
ggaactgagttcacctacaacgacgagacgatcagctcccagagcatggccacccagctg
gccttcatgcgcctgctgtccaaccaggctagccagaacatcacctaccactgcaagaac
agcgttgcctacatggacgctgagagcggcagcctgaagaaggctgtggtgctcggcggc
tccaacgatgtggagctcagggctgagggcaacagccgtttcaccttctctgtggtggag
gacggttgcactagacacactggtgagtggagcaagacagtcattgagtacagaacaaat
aaaccatctcgccttcccatcctcgacattgcacctatggacattggtggagctgatcag
gagtttggtttggacattggcccagtctgtttcaaataa
DBGET
integrated database retrieval system
