Syngnathoides biaculeatus (alligator pipefish): 133502559
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Entry
133502559 CDS
T09681
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133502559 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbia03019
]
133502559 (cnot1)
Messenger RNA biogenesis [BR:
sbia03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133502559 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
133502559 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
133502559
NCBI-ProteinID:
XP_061679461
LinkDB
All DBs
Position
6:31621514..31659977
Genome browser
AA seq
2395 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLISKPNFISTLCYAIDSPLHYQKSLKPSVHLFTQLSKVLK
LSKVQEVIFGLALLNSSSADLRLFAAQFIKQKLPDLLRSYIDADLGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGASGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGELAKTIMESSLAEFMQEVGYGFCASLDECRNIIHQYGVREVTASQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKNDSSQAHTWNVEVLIDVVKEVNPNLNFKEVTYE
LDHAGFLIRDSKGLHIVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLMSPEVFC
FADYPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGQYEQVKQLFSFPIKHC
PDMLVLALLQISTSWHTLRHELISTLMPTFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACVTFLKRRCPSIMGGLALDKDQPKSSQLPPETLATMLACLQSCAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRAPSTSSLDAISPVQMDPLTGMGSL
NLGGTATSHSQSMQGFPTSLSSAFSNPQSPAKAFPPLSNTNPSTPFGGIGSLSSQLPGMD
SGPLGSGIGTSIASSLGMPAVNTDPFGTRKMSTPSLNPPTFQQSKMKASDLSQVWPEANQ
HFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEE
YRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPYGSKMYYFGIAAL
DRFKNRLKDYPQYCQHLASIAHFLQFPHHLQECVQYIEYGQQSRDPPVKMQGSITTPGSL
ALAQVQAQAQSQQPGVPKVPQPGQTSTLVTTTTTTTTAAKTTTITRPTPSSFKKDVPPSI
NTTNIDTLLVATDQTERIVEPPENVQEKTAFIFNNLSQSNMTQKVEELKETVKEEFMPWV
SQYLVMKRVSIEPNFHSLYSNFLDTLKNPEFVKMVLTETYRNIKVLLTSDKAAANFSDRS
LLKNLGHWLGMITLAKNKPILYTDLEIKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSI
VFRPQNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLSLDINDLKPGNLLKDKDKLK
SLEEQLSAPKKEAKPSDEMLPVSTSGDFVPFSAPPSTPAATTAPCTTTGPPTPQFSYHDI
NVYALAGLAPHININANIPLLQAHPQLKQCVRQSVERAVQELVHPVVDRSIKIAMTTCEQ
IIRKDFALDSEESRMRVAAHHMMRNLTAGMAMITCREPLLVSIAANLKNSFAAALRAATP
QQREMMEEAAARVAQENCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCD
PVVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPSNDLSQPTGFLAQPMKQQ
AWATDDVAQIYDKCMADLEQHLHAIPQALSMNPLTQALRSLLEAVALARNSRDGIAALGL
LQKAVEGLLDATSGADNDLLLRYRECHLLVLKALQDGRAYGPQWCNKQITRCLIECRDEY
KYNVEAVELLIRNHLVNMQQYDLHLAQSMENGLHYMAVAFAMQLVKLLLVDERSVSHVTE
ADLFHTIETLMRTCAHSRANAPEGLPQLMDVVRSNYEAMIDRAHGGPNFMMHSGISQASE
YDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRL
CTEMCVEISYRAQAEQQHNPAASAAIIRAKCYHNLDAFVRLIALLVKHSGEASNTVTKIN
LLNKVLGIVVGVLIQDHDVRHIEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCN
TFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRN
VELNKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMR
LPDPFTPNLKVDMLSEINIAPRILTNFTAVMPSQFKKDLDSYLKTRSPVTFLSELRSNLQ
VSNEPGNRYNIQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTE
GRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWG
LLITFIELIKNPAFKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7188 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctatttggtggacaatttg
acaaagaaaaactacagagccagccagcaagaaatacaacatattgtaaatcgtcacggt
cctgaggcagacaggcatctacttcgctgtcttttctctcatgtggatttcagtggcgat
ggtaaaagcagcggcaaggattttcaccagacacagtttctaatccaggagtgtgtgtcg
ctcatatcaaagcccaactttatttcaactctgtgctacgccattgacagtcccctgcac
taccaaaagagtttgaaaccatctgtccatttattcactcaactaagtaaagttctgaag
ctcagcaaggtccaagaggtgatatttgggctcgcgcttctcaactcctccagtgcagac
ctgcggttatttgctgcgcagttcattaagcagaagcttcctgacctcctccggtcatac
attgacgcggatcttggtggaaaccaagaaggtggtttccaagacatcgctatagaggtt
ttacacctactgctatcccatttactgtttggccagaagggtgccagtggggttggacag
gagcagattgacgccttcttgaagacactgtgccgagattttccgcaggagcgctgccct
gtggtgctcgcaccactcctataccctgaaaaacgggacattctcatggacaggatcctg
cctgactcgggggagttagccaagaccataatggagagttctcttgctgagttcatgcag
gaagtaggctatggcttctgtgccagtttggacgagtgcagaaacatcattcaccaatat
ggggtgagggaggtgacagccagccaggtagccagagtcctgggcatgatggctcgtaca
cactcgggcctaactgatggtatccctctacagtccatctctgctcctggaagtggcatc
tggagtgatggaaaggataagaatgacagttcacaggcacacacatggaatgttgaggtg
cttattgacgtagttaaagaagtgaatcccaatttgaacttcaaagaggtgacgtacgaa
ctggatcacgcaggattcctaatccgggacagtaaggggctgcatatagtagtgtatggc
attcagcggggtttgggcatggaggtttttcctgtagatctcatatatcggccatggaaa
cacgcagaaggacagttatcatttattcaacactctctaatgagccctgaggtgttctgc
tttgccgactacccttgccacacagtggcaatcgacatccttaaagcgccaccagaggat
gacaacagggagattgcaacatggaaaagtctggatttggtggaaagcctccttaggcta
tcagaggttggccagtacgagcaggtgaaacaactcttcagcttccccatcaagcactgc
ccagatatgctggttctagcattgctgcagatctcgacctcctggcacacactgcgccat
gagctcatctccaccctaatgcccacctttctgggtaaccaccccaactcagctataatc
ctgcactatgcctggcatggacagggacagtctccttccatccgtcagttaattatgcat
tcaatggctgagtggtatatgagaggtgagcagtatgaccaagccaagttgtctcgtatc
ctggatgtggcccaagacttgaagtctctctcgatgctgctgaatggtactccgtttgcc
tttgttattgaccttgctgcacttgcctctcgccgtgaatacctcaaacttgataaatgg
ttgactgacaaaattagagagcacggggaaccttttatccaagcttgcgtcacattcctg
aagaggcgatgcccatctattatgggaggtctggccctagacaaggaccagcctaaaagc
tcccagttacctccagagaccttagccactatgctggcctgtcttcagtcttgcgctggg
agtgtttcgcaagagctgtccgagactatcctgaccatggttgcaaactgcagtaatgtt
atgaacaaagcccgccagccaccacctggagtcatgcctaaaggtcgggccccgagcacc
agcagcctggatgccatttcccctgttcagatggaccctctcacaggcatgggctccttg
aacttgggtggcacagccacctcccactctcagagcatgcaaggtttccccacctccctt
agttcagcgttcagtaatccccaatcgccagcaaaggcatttccaccgctctcaaacacc
aacccaagcacaccatttgggggtattggcagcttgtcctcgcagctccctggtatggac
tctggtcccttgggctctggcattgggactagtattgcttctagtcttggaatgccagca
gtaaacacagatccatttggcaccaggaaaatgagcacaccaagcctgaacccacctacc
ttccagcagagtaagatgaaggcctctgacctttctcaggtttggcctgaggcaaaccag
cactttagcaaggagatagatgatgaggccaacagttacttccagcgcatctacaaccac
ccacctcacccaactatgtctgtggatgaagttctagagatgctgcagcggtttaaagat
tccaccatcaaacgggagcgagaagtgttcaattgtatgcttcggaatttatttgaggag
taccgtttcttcccccaatatccggacaaggaactgcacatcacggcctgcttgtttggc
ggcatcatcgagaaaggtcttgttacctacatggccctgggcctggcactccgatacgtc
cttgaagccttaagaaaaccatatggatctaaaatgtattactttggaattgctgccctc
gaccggttcaaaaacagattgaaggactacccccagtattgccaacatcttgcatcaatt
gcacattttttgcaatttccccaccatttacaagagtgtgtgcagtatattgagtatggc
caacagtcacgggaccccccggtgaagatgcaaggctccatcaccaccccaggcagtctg
gcactggcacaggttcaagcccaagcccaatcacagcaacctggtgttccaaaagtaccg
caaccaggacaaacgagcaccctagtcacgaccactacgactactaccactgctgctaag
accactaccatcacaaggccaacacccagcagcttcaagaaggatgtgcccccctccata
aacactacaaatattgacactctgctggtggctactgaccaaacagaacggattgtagaa
cctccagagaacgttcaggagaagactgctttcatcttcaataacctttctcagtcaaac
atgacacaaaaggtagaggagttgaaagagactgtgaaggaagagtttatgccatgggtg
tctcagtatctggtgatgaagcgtgtcagcattgagcccaattttcacagtctttactcg
aactttctggacacacttaagaatccagagtttgtcaaaatggtcctcacggagacgtac
aggaacatcaaggttttgttgacatctgacaaggctgctgccaatttctctgatcgctca
ttactgaagaacctggggcactggctggggatgattacactggccaaaaacaagcctatt
ctctatacagatctggaaattaagtctctgctactggaagcctatgtgaaaggccagcaa
gagctcctttacgtagttcccttcgtggccaaggttttggagtccagtcttcgaagcatt
gttttcaggccccagaacccttggaccatggccatcatgaatgttctcgctgagctacat
caagaacatgacctcaagcttaacctaaaatttgagattgaagttctttgtaagaacttg
tccctggatatcaatgacctgaaaccagggaacctgttgaaggacaaggacaaacttaag
agtcttgaggagcagctttctgcaccaaagaaagaagcaaagccttcagatgagatgctc
ccagtttccacatcaggagactttgttccgttttcagcaccaccctcaacaccggctgcc
accactgccccttgcacaaccacgggaccccccaccccacaattcagttatcatgatatt
aatgtctacgccttggcaggcctggcaccgcacatcaatataaatgccaacatccctctt
ctacaagcccatcctcagttgaagcagtgtgtgaggcaatcagttgagcgcgcagtccag
gagctggtacatcccgtggttgaccgctctatcaaaattgctatgacgacgtgcgagcaa
atcatccggaaggacttcgctctggattcagaggagtcccgcatgcgtgtggcagcacac
cacatgatgagaaacttgactgccggcatggccatgatcacatgtcgggagcctctgctc
gtcagcattgcggctaatctcaagaatagttttgcagctgcgctaagggcggcaactccc
caacagagggaaatgatggaggaagctgcagcaagggttgctcaagagaactgtgaactg
gcatgttgctttattcagaaaacagctgtggagaaggctggccctgaaatggacaagagg
cttgccacggaatttgaactcaggaagcatgcacgccaagaaggccgccgttactgtgat
ccagttgttttgacttaccaggctgaacgtatgcctgagcaaataagactaaaggtcgga
ggagtcgaccccaagcagctagctgtgtatgaggagtttgcaaggaatgttcctggtttc
ttacccagtaatgacctttctcaaccaacgggtttcctggctcagccaatgaagcaacaa
gcgtgggccacggacgatgttgcacaaatctatgacaagtgcatggcagacttggagcag
catcttcacgccatccctcaggcactctccatgaaccccctgacccaagccctacgcagc
ctgctagaggctgtggccttggcaagaaactccagggatggtattgcagctcttggactg
ctccaaaaggctgtggaaggtcttctggatgccacaagtggagcagataatgacttgctt
ctccgttatcgggagtgccacctgctggttttgaaagccctccaggatgggcgtgcctat
ggaccacagtggtgcaacaaacagatcaccaggtgtctgattgaatgccgggatgaatac
aagtacaatgtcgaggcggtggagcttttgatccgaaatcatcttgtgaatatgcagcaa
tatgatctgcacctagcccagtcaatggaaaatggactccactacatggcggtggcattt
gccatgcagttggtgaagctcctgctggtggatgagcggagtgtgagccatgtaactgaa
gcagatctcttccacaccattgagactttaatgaggacctgtgcgcactctcgagcaaat
gcaccagaaggacttccccagctgatggatgtggttcgctccaactacgaggccatgatt
gatcgggcccacggtggtccgaacttcatgatgcactctgggatttcccaggcttcagag
tatgacgatccccccggcctgagggagaaggcggagtatcttctgagggaatgggtcaac
ctttatcactcggctgctgctggccgtgacagcaccaaagcattctctgcctttgttggc
cagatgcaccagcagggtattctgaagacagatgacctgatcacgcgcttcttccgcctt
tgcactgagatgtgtgtggaaatcagttaccgcgcacaggctgaacagcagcacaaccca
gcagccagcgcagcaatcatcagagcaaagtgctaccacaatctggatgcctttgttcga
ctcatagctctgctcgtcaaacactctggagaagcctccaacacagtgaccaaaatcaac
ctcctcaacaaggtgctgggaatcgttgttggggtgttgatccaggaccatgatgtccgt
cacatagaatttcagcagctgccctaccatcgcattttcatcatgctactgttggagctc
aatgctcctgagcatgttctcgagaccatcaatttccagactctcaccgctttctgcaac
acttttcacatactgagacccaccaaagcgcctggttttgtgtacgcttggcttgaactg
atctcccatcgcatcttcatcgcccgcatgctagcgcacacgccacagcagaagggttgg
ccaatgtatgcacagctgctcattgatctgtttaagtacctggcacctttcttgcggaat
gtagagctcaacaaacctatgcaaatcctctacaagggcacactcagagtactgctggtc
ctgttgcatgacttcccagagttcttatgtgattaccattatgggttctgtgatgtaatc
ccacccaactgcattcagctacgtaacctcatcctgagtgcctttccacgcaacatgagg
ctccctgaccctttcacacccaatctcaaggtggacatgctgagtgagatcaacatcgct
cctcgcatcctcaccaatttcacagctgtcatgccttcccagttcaagaaggatctggac
tcctatctgaaaacacgttcgccggttactttcctctcagagctgcgcagcaatctacaa
gtttcgaatgagccaggaaaccgctacaacatccagttgatcaacgccttagtgttgtat
gtgggaactcaagccatcgcgcacatccacaacaagggtagcacgccctccatgagcacc
atcacccactctgcacacatggacatcttccagaacctggctgtggacctagacacggag
gggcgttacctgttcttgaacgctatcgccaatcaactgcgctacccgaacagccacacg
cattatttcagctgcaccatgctttatctgtttgctgaggcaaacactgaggccatccag
gagcagatcaccagggtcctgttggagagattgatcgtgaaccggcctcacccgtggggt
ctcctcatcaccttcattgagctgatcaagaatccggccttcaagttctggagccatgac
tttgtgcactgtgcccctgagattgaaaagttgttccagtcggtggctcagtgctgcatg
ggccagaagcaggcccagcaggtgatggaaggaaccggcgccagctag
DBGET
integrated database retrieval system
