Shigella boydii Sb227 (serotype 4): SBO_4284
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Entry
SBO_4284 CDS
T00301
Symbol
hfq
Name
(GenBank) host factor I for bacteriophage Q beta replication
KO
K03666
host factor-I protein
Organism
sbo
Shigella boydii Sb227 (serotype 4)
Pathway
sbo02024
Quorum sensing
sbo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SBO_4284 (hfq)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
SBO_4284 (hfq)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbo03019
]
SBO_4284 (hfq)
03036 Chromosome and associated proteins [BR:
sbo03036
]
SBO_4284 (hfq)
Messenger RNA biogenesis [BR:
sbo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
SBO_4284 (hfq)
Chromosome and associated proteins [BR:
sbo03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
SBO_4284 (hfq)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
LSM
Hfq_1
Motif
Other DBs
NCBI-ProteinID:
ABB68706
ShiBASE_China:
SBO4284
UniProt:
Q31TA2
LinkDB
All DBs
Position
complement(4333684..4333992)
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AA seq
102 aa
AA seq
DB search
MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAIS
TVVPSRPVSHHSNNAGGGTSSNYHHGSSAQNTSAQQDSEETE
NT seq
309 nt
NT seq
+upstream
nt +downstream
nt
atggctaaggggcaatctttacaagatccgttcctgaacgcactgcgtcgggaacgtgtt
ccagtttctatttatttggtgaatggtattaagctgcaagggcaaatcgagtcttttgat
cagttcgtgatcctgttgaaaaacacggtcagccagatggtttacaagcacgcgatttct
actgttgtcccgtctcgtccggtttctcatcacagtaacaacgccggtggcggtaccagc
agtaactaccatcatggtagcagcgcgcagaatacttccgcgcaacaggacagcgaagaa
accgaataa
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