Shewanella baltica OS223: Sbal223_4063
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Entry
Sbal223_4063 CDS
T00803
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
sbp
Shewanella baltica OS223
Pathway
sbp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sbp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Sbal223_4063
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sbp03021
]
Sbal223_4063
03400 DNA repair and recombination proteins [BR:
sbp03400
]
Sbal223_4063
Enzymes [BR:
sbp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Sbal223_4063
Transcription machinery [BR:
sbp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Sbal223_4063
DNA repair and recombination proteins [BR:
sbp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Sbal223_4063
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
ACK48536
UniProt:
B8EBL2
LinkDB
All DBs
Position
complement(4821924..4825955)
Genome browser
AA seq
1343 aa
AA seq
DB search
MVYSYSEKKRIRKDFGKRPKVLDIPYLLSIQLDSFKKFTDQDPTGERGLEAAFRSVFPIK
SFSGNSELQYVSYKLGEPVFDVKECQIRGVTYSAPLRVKLRMVLYDREAAAGTVKDIKEQ
EVYMGDIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDALFVRIDRRRKLPATIMLRALEYSTQEILDLFFERVEFKIKKDTLVMA
LVPERLRGETASYDIKDAEGSVLVEAGRRITARHIRQLEKTNTTELEVPVEYIVGKYAAQ
DYIDPDTGEVLVSANSEISLEDLAKLSLAGIKELSTLYINELDHGAYISDTLRIDSTTNR
LEALVEIYRMMRPGEPPTKDAAEALFQNLFFSEERYDLSKVGRMKFNRRLSIPDDEGSGV
LSKEDIVAVMKNIIHIRNGFDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVRERL
SLGDLNELMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLT
RERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLASFARTNSYGFLETPYRKVIDGVI
TDEVEYLSAIEEGRYVIAQANIEIDANGRMAEEQIACRHKGESTFMRAADIQYMDVSPQQ
IISVAASLIPFLEHDDANRALMGANMQRQAVPTLRSEKPLVGTGIERTLAVDSGVVVVAK
RGGFVDYVDASRIVVKVNEDELRPGEAGIDIYNLTKYTRSNQNTCINQRPCCSVGEPVVR
GDVLADGPSTDLGDLALGQNMRIAFMPWNGYNFEDSILISERVAQEDRFTTIHIQELSCI
ARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEE
KLLRAIFGEKASDVKDSSLRVPNSVKGTIIDVQVFTRDGVEKDKRAVEIEEMHIAQARKD
LGEEFKILEEGVLSRARNLLIGAGFSDAQIAALPRKDVLIQVIDDETKQTELEQLAEQHE
ELKADFDKKFEIKRRKITQGDDLAPGVLKIVKVYLAVKRTIQPGDKMAGRHGNKGVISKI
CPIEDMPYDEQGNPVDIVLNPLGVPSRMNIGQVLEVHMGAAAKGIGNKITAMLEEQRELA
EVRGYIKQVYELGDEVQQRVDIDSFTDDEVLRLATNLKGGIPIATPAFDGAKEKEIKQML
ELAGLPTSGQLKLFDGRTGNEFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPL
GGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTQMYKNIVDGNHQMQPGM
PESFNVLLKEIRSLGINIELDQA
NT seq
4032 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctattctgaaaagaagcgtattcgcaaagactttggtaagcgtccaaaa
gttttggatatcccttatttattgtctatccagctagactcttttaagaagttcaccgat
caagatcctaccggtgagcgcggtttagaagccgccttccgtagcgtttttcccatcaag
agcttttctggtaattcagaactgcaatacgtcagctataagcttggcgagcctgttttt
gatgtgaaagagtgtcagatccgtggtgttacgtactcagctccactacgcgttaaatta
cgcatggtgttgtatgaccgtgaagcagcggcgggcacagtaaaagatattaaagaacaa
gaagtctacatgggtgatatcccattgatgacggataacggtacttttgttatcaacggt
actgagcgtgtaatcgtatctcaattacatcgttctccaggcgtgttctttgatcatgac
cgtggtaaaacccactcatcaggtaaggtgctgtataacgcacgtattattccttaccgt
ggttcatggcttgactttgaattcgatcctaaagatgcactatttgtgcgtattgaccgt
cgccgcaaattgcctgcgaccatcatgttacgtgcattagaatattctactcaagagatc
ctcgatctgttctttgaacgcgttgagttcaagattaagaaagatactctggttatggct
ttggttcctgagcgtctgcgtggcgaaactgccagctatgacatcaaggatgctgaaggt
tctgtattggttgaagctggtcgtcgtatcactgcgcgccacattcgccaattagaaaaa
accaataccactgagctcgaagtgccagttgaatatatcgtgggcaaatatgctgctcaa
gattatatcgatccggacacgggtgaagttttagtctctgccaacagtgaaattagccta
gaagatctggctaagttatcattggccggtattaaagaactcagcacgttgtatatcaac
gagctagatcatggtgcttatatttcagatacgctgcgtatcgattcaaccactaaccgc
ttagaagcgctggttgagatctatcgtatgatgcgtcctggcgagccaccaaccaaagat
gctgccgaagcactattccagaacttgttcttcagtgaagagcgttatgacctgtctaaa
gtaggtcgtatgaagttcaaccgtcgtctcagcattcctgatgacgaaggtagcggtgta
ttgtctaaagaagacatcgtcgcggtaatgaagaacatcattcatatccgtaacggtttc
gacgaagtcgatgatatcgatcacttaggcaaccgtcgtattcgtagcgtcggtgaaatg
gctgaaaaccaattccgcgtaggtttagtccgtgttgagcgcgccgtgcgtgaacgtcta
tctttaggcgatctgaacgagctgatgccacaagacttgattaacgctaagccaatttct
gctgcagtgaaagagttcttcggttcttctcagctgtcacaattcatggaccaaaacaac
ccgctgtcagaagtaacgcataagcgtcgtatttctgctcttggcccaggtggtttgact
cgtgaacgtgcaggcttcgaagtccgcgacgtacatccaacgcattatggtcgtttatgt
ccaattgagacccctgaaggtccaaacattggtctaatcaactcattagcaagctttgcc
cgtactaactcatacggcttccttgaaacgccataccgcaaggttatcgacggcgtgatt
actgacgaagtggaatacttgtcagcaatcgaagaaggtcgttatgtgattgcacaggcg
aacattgaaattgatgcgaacggtcgtatggcagaagagcaaattgcttgtcgtcataaa
ggtgaatctacctttatgcgcgctgctgacatccagtatatggacgtttcgccacaacag
atcatttctgttgctgcgtcactcatcccgttcttagaacacgatgatgctaaccgtgca
ttgatgggtgcgaacatgcaacgtcaagccgtaccaacactgcgctctgaaaagccgcta
gtaggtactggtattgaacgtactctcgctgttgactcaggtgttgtggttgttgctaag
cgtggtggttttgtagactacgttgatgcgagccgtatcgttgttaaggtaaatgaagat
gagctacgcccaggcgaagccggtatcgacatttataatctgactaagtacacccgttct
aaccaaaacacttgtatcaaccaacgtccttgttgttcagttggtgagccagtggttcgc
ggtgacgtgttagcagacggtccgtctactgacttaggtgacttagcccttggccagaac
atgcgtatcgcgttcatgccttggaacggttacaacttcgaagattcgatcttaatttct
gagcgcgtagcgcaagaagaccgtttcactactatccatattcaggagctgtcttgtatt
gctcgtgatactaagttgggtagcgaagaaatcacggctgatattccaaacgtaggtgag
tctgctctgtcgaaactcgacgagtcaggtatcgtttacattggtgcagaagtgaagggc
ggcgatattctggttggtaaagtgacgccaaaaggcgaaacacagctaacgccagaagag
aagttattgcgagctatcttcggtgaaaaagcgtctgacgttaaagacagttcactgcgt
gtacctaactctgttaagggtactatcatcgacgttcaggtatttacccgtgacggcgtt
gagaaagacaagcgtgcagttgaaatcgaagagatgcacattgcccaagctcgtaaagac
ttaggcgaagagttcaagatccttgaagaaggtgtattgagccgtgcgcgtaacttgtta
atcggtgctggtttcagtgacgcgcaaattgctgccttgccacgtaaagatgttttgatt
caagtcattgacgatgaaactaaacaaactgaacttgagcaattagctgaacagcatgaa
gagctgaaagctgacttcgataagaagtttgaaatcaaacgtcgcaagatcacccaaggt
gatgacttggctccaggcgtactcaagattgttaaggtttacttagcggttaagcgtact
atccaaccaggtgacaagatggcgggtcgtcacggtaacaagggtgttatctctaagatt
tgcccaatcgaagacatgccgtatgacgaacaaggtaacccagtagacatcgtattgaac
ccactaggtgttccatcacgtatgaacattggtcaggtacttgaagtccatatgggcgcc
gctgccaaaggcattggtaacaagatcactgcgatgcttgaagaacagcgtgagctggct
gaagttcgtggctacatcaaacaagtttatgaattaggtgacgaagtgcaacagcgcgtc
gatatcgattcattcaccgatgatgaagtattacgtcttgcgactaacctgaaaggcggt
atcccgattgcaactcctgcattcgatggtgctaaagagaaagagatcaagcagatgctt
gaacttgcaggtttgccaacctctggtcagttgaagttgtttgatggtcgtaccggtaac
gaatttgagcgtcaagtaactgttggttacatgtacatgctcaaactgaaccacttagtt
gatgacaagatgcacgcccgttctaccggttcgtacagcttagtgactcaacaaccactg
ggcggtaaagctcagttcggtggtcagcgtttcggtgagatggaagtgtgggcactagaa
gcatacggtgccgcttatacgcttcaagaaatgctcactgttaaatcggatgacgttaac
ggtcgtactcagatgtataagaacatcgtcgacggtaaccatcagatgcaacctggcatg
ccagagtccttcaacgtgttactgaaggagatccgttcactcggtattaatatcgagttg
gatcaggcataa
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