Sphaerochaeta globosa: SpiBuddy_2857
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Entry
SpiBuddy_2857 CDS
T01439
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
sbu
Sphaerochaeta globosa
Pathway
sbu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sbu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SpiBuddy_2857
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sbu03021
]
SpiBuddy_2857
03400 DNA repair and recombination proteins [BR:
sbu03400
]
SpiBuddy_2857
Enzymes [BR:
sbu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SpiBuddy_2857
Transcription machinery [BR:
sbu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SpiBuddy_2857
DNA repair and recombination proteins [BR:
sbu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SpiBuddy_2857
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
ADY14665
UniProt:
F0RS60
LinkDB
All DBs
Position
complement(3085230..3088748)
Genome browser
AA seq
1172 aa
AA seq
DB search
MVAKGKSITRTYIGSELHEVCELPNLIGIQLDSYERFLQLERCKQGLGPDSSYGLEEVFQ
STFPIDSPNGEMRLAYKGYTIDLDNIKFSETECKKKGRSFSVPIKVTISLEFSNGEMREK
EIFFGDIPLMTDRGTFIINGAERVVVSQIHRSPGVIFSNEKDVYSSRIIPYRGSWLEFEI
DDKKHLIFTKIDRKKRILGTLFLRAIGFDTREKILEQFYSSETVELADDSDLKSNLENRY
LFKDVYAQVEKTEKKVLRAGDMLHAHEIDELLKLNVHEVQLVNLRGEGTLHSDMILNCFE
IEDAKYTREGCDEPTKEDVLSPIFSVLMPGEMIAIERAEKDLPDMFFSNRRYDLGSVGRY
KFNKKFGTGTEEEEENASTDLTVLTPQDIVNTMDFLIKVFIREHNVDDIDHLGNRRVRSV
GELLQNALKSAFARMERIAKERMNLETGSVKPQDLISIKPIVAAIKEFFGSSQLSQFMDQ
VNPLAELTHKRRLNALGPGGLSRDRAGFEVRDVHYTHYGRICPIETPEGPNIGLIVSLAN
YTRINQHGFLETPYRKVVNGVVSKQYRYLDANDEEKFFIAQASAKLDTDGNFQEKEVPVR
RSGDYSTKPPVEIKYMDVDPKQVISVAASLIPFLEHDDANRALMGSNMQRQAVPLVFPET
PRVGTGMEAKTAYDSGVLVKAKRSGTITYVSSDRVVIQPDSAQIQGQLDTYEIQKYQRTN
QDTCFNQKPIVSFGQHVEAGAVLADGPATQSAELALGRNILVGFVPWNGYNYEDAVLISE
RVVKDDIFTSVHIKEFTTDIRETKLGPEKLTRDIPNTSEKMLEQLDEDGIVRIGTAVRPG
SILVGKVTPKSESDTTPEFKLLNSIFGEKAKEVRDTSLKVPHGTEGTVIDIQRLKRSNND
ELPPGVEETVKVLIATKRKLRQGDKMAGRHGNKGVVSRILAEEDMPYMADGTPLDVCLNP
LGVPSRMNIGQLMETQLGWAAVKLDKWYSTPVFQSASMAQIEEKMREAGLPENSKTVLYN
GLTGVPFVNPVFCGYIYYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRLGEME
VWALEAYGAANTLQELLTIKSDDMNGRVKIYESIVKGEPATTAGMPEAFNVLVQEIRGLA
LDMSVYDSKGRQVPLTERDEELIAKQSKGSLN
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atggttgccaaaggcaaatccataacacgcacgtacatcggttctgaattacatgaagtc
tgtgaactgcccaaccttatcgggatccagcttgattcctatgagagatttttgcagctt
gaacgttgcaagcagggattaggtccggattcgtcgtacgggcttgaggaagtgttccag
tcgacattccccattgacagccccaatggtgagatgcgtctcgcttataaggggtatacg
attgaccttgataatatcaagttctccgaaacggagtgcaagaagaaaggtcgatccttt
agtgtgcccatcaaagtcacgatcagccttgagttctccaatggagaaatgagggagaaa
gagattttctttggtgatattccgctgatgaccgaccgtggtacctttattattaatggt
gccgagcgcgttgtggtcagtcagattcaccgctcccccggtgtcattttttcgaatgag
aaagatgtctactcctccaggattattccctatcggggttcttggttggagtttgagatt
gatgataaaaagcatttgatcttcaccaagattgaccgaaagaagcgtattctaggtacg
ctctttctgcgtgcaatcgggtttgacacccgtgagaagattcttgagcagttttacagt
tccgaaacagtagagcttgcagatgattcagacttgaagtcaaacttggaaaacaggtat
ctcttcaaggatgtctatgcacaggtcgaaaaaaccgagaagaaggttttgcgcgccggt
gacatgctgcatgcccacgaaatcgacgagttgctcaagctcaatgttcatgaggtgcaa
ttagtcaacctccgtggtgaaggaaccctgcacagtgacatgattctcaattgtttcgag
attgaggatgccaagtatactcgtgaaggctgcgatgaacctaccaaggaagacgtactt
tccccgattttctcagtcttgatgcctggtgagatgattgccatcgagcgtgcagagaag
gaccttcctgatatgttcttctccaaccgccgctatgatctcggttctgtaggacgttac
aagttcaataagaagtttggaaccggcactgaagaggaagaggagaatgcttccaccgat
ttgaccgttctcaccccgcaggatatcgtcaatacgatggatttcctgatcaaggtgttt
atccgtgaacataacgtcgatgatattgaccacttgggcaacaggcgtgtccgctcggtc
ggtgagcttttgcagaatgcgctgaagagtgctttcgcccgcatggagcgcatcgccaag
gagcgaatgaacctggagaccggttcggtcaaaccgcaggacctgatttcgatcaagccg
attgtggcagccatcaaggaattcttcggaagcagccagctttcgcagttcatggaccag
gtcaatccgcttgctgagcttactcataagagaaggctcaatgcactcggtcccggtggt
ctatcacgtgatcgtgcgggctttgaggttcgtgacgttcactacacccactatggtcgt
atctgtcccatcgagactcctgaaggaccaaacatcggtctgattgtctcgttggcaaac
tatacccgcatcaaccagcatggcttcttggaaaccccctatcgcaaggtagtaaacggt
gtggtgtccaagcagtatcgctatttggatgcaaacgatgaagagaaattcttcatcgcc
caggcttcggcaaagctggatactgatggaaacttccaggaaaaagaagttccggtgcgc
agaagtggtgattactccaccaagccgcctgtcgaaatcaagtacatggacgttgacccg
aagcaggtaatcagcgttgcagcctccttgattccattcctcgagcacgacgacgccaac
cgcgccctgatgggttcgaacatgcagcgtcaggcagttccccttgtattccccgaaacc
ccgcgcgtgggtaccggcatggaagcaaagactgcttatgacagcggtgtattggtgaag
gcaaagcgcagtggaacgattacctacgtcagttcggaccgtgtagtgatccagcctgat
tcggcgcagatccagggtcagttggatacctatgagattcagaagtaccagaggacaaac
caagatacttgtttcaatcagaagccgattgtttctttcggccaacatgttgaagccggt
gctgttcttgccgatggacctgcaacgcagagtgcggagttggccctcggtcgtaacatt
cttgtcggatttgttccttggaacgggtacaactatgaggacgccgtccttattagtgaa
cgggtagtcaaggacgatattttcacttctgtgcatatcaaggagttcaccaccgatatc
cgcgagaccaagctcggtcctgagaagctgaccagggatattcccaacaccagcgaaaaa
atgctcgagcagctcgacgaggatggtattgtacgtattggaaccgcagtccgtccgggc
tcgattctggtaggcaaggtaacacccaagagtgaaagcgatactactcctgagttcaag
ttgctcaactcgatattcggtgagaaggccaaggaagtccgtgacacctccctgaaggtt
ccccatggaaccgagggtaccgtcattgacattcagcggttgaagcgaagcaataatgat
gagcttcccccgggtgtcgaggagacggtgaaggtcctcattgccaccaagcgcaagctg
aggcagggtgacaagatggcaggacgacacggtaacaagggtgttgtaagccgaattctt
gccgaggaagacatgccttatatggccgatggcacgcctctggatgtctgtttgaacccg
ttgggtgttcctagccgaatgaacatcggacagctgatggagacccagctcggttgggct
gctgtgaaactggacaagtggtattccactccggtattccagagtgcttccatggctcag
attgaagagaaaatgcgcgaggcaggtttgcctgagaactccaagactgttctctataat
ggtcttacgggtgtccccttcgtgaatcctgtattctgcggatatatctactatttgaag
ttgcaccacctggtcgatgacaagatgcatgcccgttcaaccggtccctattcactggta
acccagcagccgcttggcggtaaggctcagttcggtggtcagagacttggagagatggaa
gtatgggcacttgaggcgtatggcgctgccaacacgctgcaggagcttttgaccatcaag
agtgacgacatgaacggacgtgtcaagatttatgagagtatcgtcaagggagaaccggcc
actactgcaggaatgcccgaggcattcaatgtattggttcaggagatccgtggcttggct
ctggatatgtctgtgtatgactccaagggtcggcaagtgccacttactgaacgagatgaa
gagttgatcgccaagcagtcgaaaggctccctcaactaa
DBGET
integrated database retrieval system
