Shewanella carassii: TUM17387_01900
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Entry
TUM17387_01900 CDS
T07543
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
scaa
Shewanella carassii
Pathway
scaa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
scaa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TUM17387_01900 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scaa03021
]
TUM17387_01900 (rpoB)
03400 DNA repair and recombination proteins [BR:
scaa03400
]
TUM17387_01900 (rpoB)
Enzymes [BR:
scaa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TUM17387_01900 (rpoB)
Transcription machinery [BR:
scaa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
TUM17387_01900 (rpoB)
DNA repair and recombination proteins [BR:
scaa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
TUM17387_01900 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
BCV64831
LinkDB
All DBs
Position
210736..214767
Genome browser
AA seq
1343 aa
AA seq
DB search
MVYSYSEKKRIRKDFGKRPQVLDIPYLLSIQLDSFKKFTDQDPTGERGLEAAFRSVFPIK
SFSGNSELQYVSYKLGEPVFDVKECQIRGVTYSAPLRVKLRMVLYDREAAAGTVKDIKEQ
EVYMGDIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDALFVRIDRRRKLPASIILRALEYSTQDILDIFFERVDFKIKKDSLVMT
LVPDRLRGETASYDIKDSEGTVLVEKGRRITARHIRQLEKTNTTELEVPVEYIIGKVAAQ
DYIDPDTGEVLVTANNEISLEDLANLSLAGIKEISTLYINELDHGAYISDTLRIDSTTNR
LEALVEIYRMMRPGEPPTKDAAEALFQNLFFSEERYDLSKVGRMKFNRRLEIDENEGTGV
LTKEDIVAVMKKIIEIRNGFDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVRERL
SLGDLNELMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLT
RERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLSTFARTNSYGFLETPYRKVIDSVV
TDEVEYLSAIEEGRYVIAQANIELDSEGRIVEEQVACRHKGESTFMRASDIQYMDVSPQQ
IISVAASLIPFLEHDDANRALMGANMQRQAVPTLKSEKPLVGTGIERTLAVDSGVVVAAK
RGGVIDYVDASRIVVKVNEDELMPGEAGIDIYNLTKYTRSNQNTCINQRPCCSVGDPVVR
GDVLADGPSTDLGDLALGQNMRIAFMTWNGYNFEDSILISERVAQEDRFTTIHIQELSCI
ARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEE
KLLRAIFGEKASDVKDSSLRVPNSVKGTVIDVQVFTRDGVEKDKRAIEIEEMHIAQARKD
LTEEFKILEEGVLSRARNLLLSAGFSEAKLAELPRKDVLVQVIDDEAKQTELEQLAEQHE
ELKADFDKKFEIKRRKITQGDDLAPGVLKIVKVYLAVKRTIQPGDKMAGRHGNKGVISKI
CPIEDMPYDEQGNPVDIVLNPLGVPSRMNIGQVLEVHLGAAAKGIGNRINTMLEEQRELA
ELRGYIKQVYELGDEVKQRVDIDSFTDDEVLRLAKHLKDGLPTATPAFDGAKEKEIKQML
ELAGLPTSGQLNLFDGRTGNQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPL
GGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTQMYKNIVDGNHQMQPGM
PESFNVLLKEIRSLGINIELDQE
NT seq
4032 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctattctgaaaagaagcgtattcgcaaagacttcggtaagcgtccacaa
gtgttggatatcccttacctgttgtctattcagttagactcttttaagaagttcaccgat
caagatcctaccggtgagcgtggcctagaggccgctttccgtagcgtttttcccatcaag
agcttttctggtaattcagaactgcagtacgtcagctataagctgggcgagcctgttttt
gatgtgaaagagtgtcaaatccgcggtgtgacatactccgctccactgcgcgttaagctg
cgcatggtgctgtatgatcgtgaagctgccgctggcactgtaaaagatattaaagaacaa
gaagtctacatgggggatatccctctgatgactgaaaacggtacctttgttatcaatggt
actgagcgtgttatcgtatctcagctgcaccgtagcccaggtgtgttcttcgaccacgac
cgtggtaagacacactcctcaggtaaggtgttgtataacgcgcgtattattccttaccgc
ggttcatggctcgacttcgagttcgaccctaaagatgcgttgtttgtacgtattgaccgt
cgtcgtaagctgcctgccagtatcattctgcgtgccctggaatattctactcaggatatc
ctcgacatcttctttgagcgtgtcgacttcaagatcaagaaagattctctggtcatgact
ctggttcctgatcgtctgcgtggtgaaactgccagctatgacatcaaggattcagaaggc
acagtgctggtagagaaaggtcgtcgaatcactgcccgtcatatccgccaactggaaaaa
accaataccactgaactggaagttccggttgagtacatcattggtaaagtagcggctcag
gactatatcgatcctgacacaggtgaagtactggttaccgccaacaacgagatcagcctg
gaagacctggccaatctgtctctggccggtatcaaagagatcagcactctgtacatcaac
gagctggatcacggtgcttacatctctgacaccttgcgtattgactcaaccaccaaccgt
ttggaagccctggttgaaatctatcgcatgatgcgtcctggcgagccaccaaccaaggat
gccgccgaagctctgttccagaacctgttcttcagcgaagagcgctatgacctgtctaaa
gtgggccggatgaagttcaaccgtcgtctcgaaatcgacgagaacgaaggtaccggtgta
ctgaccaaagaagacatagttgccgtaatgaagaagatcatcgaaatccgtaacggtttt
gatgaagtcgatgatatcgaccacctgggtaaccgtcgtatccgtagtgttggcgaaatg
gccgagaaccagttccgtgttggtctggtacgtgttgagcgcgcagtacgtgaacgtctg
tctctgggcgatctgaacgaactgatgcctcaagatctgatcaacgccaagccaatctct
gcagcagtgaaagagttcttcggttcttctcagctgtcgcagtttatggatcagaacaac
ccactgtcagaagtgactcacaagcgccgtatttcggctcttggtcccggcggtctgact
cgtgagcgtgccggcttcgaagttcgagacgtgcacccaactcactatggtcgtctgtgt
ccaattgagacccctgaaggtccaaacattggtctgatcaactcgctgtccacctttgcc
cgtaccaactcatacggcttcctggaaacaccttatcgcaaggtgatcgacagtgtggtt
accgatgaagtggaatacctgtctgccatcgaagaaggccgttatgtgattgcacaggcc
aacatcgaactcgacagcgaaggccgtattgtggaagagcaggttgcctgtcgccacaag
ggtgaatccacctttatgcgtgcttccgatatccagtatatggacgtatctccacagcag
atcatctctgtggcggcatctttgatcccattccttgaacacgatgacgctaaccgtgca
ttgatgggtgcgaacatgcaacgtcaggcagtaccaacactcaagtcagagaagcctctg
gtgggtactggtattgaacgtacgctggctgttgactcaggcgtagttgtggccgccaag
cgtggcggcgtgatcgactatgttgatgccagtcgcatcgtggtcaaggttaacgaagat
gaattgatgccaggtgaagccggtatcgatatctacaacctgaccaagtacacccgttct
aaccagaacacctgcatcaaccagcgtccatgctgtagcgtaggtgatccagttgttcgt
ggcgacgtgctggccgatggtccatcaaccgacttgggcgacctggctctgggtcaaaat
atgcgcatcgcatttatgacctggaacggttacaacttcgaagactcgattttgatctcc
gagcgcgtagcgcaggaagaccgtttcaccactatccacattcaggaactgtcctgtatc
gctcgtgataccaagctgggtagcgaagagatcactgccgacatccctaacgtgggtgag
tctgcactgagcaagctggatgaatccggtatcgtttacatcggcgccgaagttaaaggc
ggtgacattctggttggtaaggtaacgcctaagggtgaaactcaactgactccggaagag
aaactgctgcgggctattttcggtgagaaagcgtctgacgttaaagacagctctctgcgt
gtacctaactcagtgaagggtaccgttatcgacgtgcaagtcttcacccgtgacggtgtt
gaaaaagacaagcgcgccatcgaaatcgaagagatgcacattgctcaagcccgtaaggac
ttgactgaagagttcaagatcctcgaagagggtgttctgagccgtgcccgtaacctgctg
ctgagcgctggtttcagtgaagccaaattggccgaactgccacgcaaagacgtattggtt
caggttatcgacgatgaagccaagcaaaccgaactggaacagctggctgaacagcacgaa
gagctgaaagccgactttgacaagaagtttgaaatcaagcgtcgcaagatcacccaaggt
gatgatctggctccaggtgtactgaagatcgttaaggtttacttggcggttaagcgtacc
atccagcctggtgacaagatggcgggtcgtcacggtaacaagggtgtgatctccaagatc
tgtcctatcgaagatatgccatacgacgagcagggtaaccctgtcgacatcgtactgaac
cctctgggtgtaccttcgcggatgaacattggtcaggtactggaagttcacttgggtgct
gcggctaagggtattggtaatcgcatcaatactatgctggaagaacagcgtgagctggct
gaactgcgtggctacatcaaacaggtctatgaactgggcgatgaagtgaagcagcgcgtg
gatatcgattcatttaccgatgatgaagttctgcgtctggccaaacacctgaaggatggt
ctgccaacggcaaccccagccttcgacggtgccaaagagaaagagatcaagcagatgctt
gagctcgcaggtctgccgacttctggtcagctgaatctgtttgatggtcgtaccggtaac
cagttcgagcgtcctgtgaccgtaggttacatgtacatgctcaaactgaaccacttggtt
gatgacaagatgcatgcccgttctaccggttcgtacagcttggttactcagcaacctctg
ggcggtaaagctcagttcggtggtcagcgtttcggtgagatggaagtgtgggccctggag
gcatacggtgctgcgtatactctgcaggaaatgctcacagtgaaatcggatgacgttaac
ggtcgtactcagatgtacaagaacatcgttgacggtaaccatcagatgcagccaggaatg
ccagagtccttcaacgtattgctgaaggagatccgttctctcggtatcaacatcgagttg
gatcaagagtaa
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