Sphingomonas cannabina: LZK98_00885
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Entry
LZK98_00885 CDS
T08607
Name
(GenBank) efflux RND transporter permease subunit
KO
K18138
multidrug efflux pump
Organism
scab
Sphingomonas cannabina
Pathway
scab01501
beta-Lactam resistance
scab01503
Cationic antimicrobial peptide (CAMP) resistance
Brite
KEGG Orthology (KO) [BR:
scab00001
]
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
LZK98_00885
01503 Cationic antimicrobial peptide (CAMP) resistance
LZK98_00885
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
scab02000
]
LZK98_00885
01504 Antimicrobial resistance genes [BR:
scab01504
]
LZK98_00885
Transporters [BR:
scab02000
]
Other transporters
Electrochemical potential-driven transporters [TC:
2
]
LZK98_00885
Antimicrobial resistance genes [BR:
scab01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
LZK98_00885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ACR_tran
Motif
Other DBs
NCBI-ProteinID:
UIJ45552
LinkDB
All DBs
Position
complement(179497..182679)
Genome browser
AA seq
1060 aa
AA seq
DB search
MMALVRVALTRPLTFIVMAVLIFGLGILSVLRMPVDIFPRIGVPVIATAWTYNGLSPEDM
AGRIINPFERVLTTTVNDIDRIESQSMNGVGVVRIYFQPGADIRTATAQVTSISQAILRQ
LPPGISPPFIVNYDASTVPIVQLALSGEGLSEQQLYDLGVNQIRPQLITVPGVAMPFPFG
GKQRQIQIDIDPEALRARGLSAGDVAAAIAAQTQIIPAGFAKVGGLQYTVRLNNAPGSVE
QLNNLPVRVVDGATITMRDIAQVRDGAPPQMNIVQVEGQRSVLMTVLKSGAASTIDIVNT
VRERIPQITEGLPETLRVQLIGDQSVLVKAAVSTVAYEGVLAAVLTSLMILLFLGSWRST
IIIVTTIPLAILAALLALSATGQTINIMTLSGLALAIGILVDDAMVTIENINWHLEKGKP
VLRSIMDGAAQIVTPAFVIVTCICIVFVPMFFLPGVAGYLFVPLALAVIFSMIASFILSR
TLIPTMAMYLLRPHREGEEAERARSRNPLVRFQHRFSTGFDRQKDRFGRVLSRVMSARRI
FIPAFLGAMVASLLLIPTLGRDFFPTVDAGQITLHVRAPAGTRIEDSTALISRVQTRVRE
LIPAEQVESVVANVGMSSALLNVIYNNTGTVGLNEGDILISLGRNRTATDTHVATLRREL
PVSFPGVDFSFLPADITSQILNFGSPAPIDIQVRGRNLAANEAYAQAILKRVRTVPGLAD
ARLQQSSRAPQLNIDIDRSRIAQYGLNQRDVTTSVATALAGTQQSAPVYWLNPENGVSYP
VVAQVPELEVDTIAALEALPVSATGAGEAQTLGGLGAVTRNTTINVASRADIQPVINIYA
TPQARDLGAVAGDIHRIIAEMDAERPAGVTVTLAGQYETMNHAFSGLAFGLIGAIILIYL
VIVVTFQSWIDPLVIIGALPAAFAGIVWMLFVTGTTISVPALTGAIMCMGVATANSILVV
SFARERLAETGDATRAAIEAAVVRFRPVLMTALAIIIGMTPIALGIGEGAEQNAPLGRAV
IGGLIFATVATLLLVPALFSIAHRKGAPSSPARELELQHV
NT seq
3183 nt
NT seq
+upstream
nt +downstream
nt
atgatggcgctcgtgcgggtcgcgctaacgcgaccgctgaccttcatcgtgatggccgtg
ctgatctttggcctcggcatcctgtccgttctgaggatgccggtcgacatcttcccgcgc
atcggcgtgccggtgatcgcgaccgcctggacctataatgggctgtcgcccgaggacatg
gccggacggatcatcaatccgttcgaacgcgtgctgaccacgaccgtcaacgacatcgac
cggatcgagagccagtcgatgaacggcgttggcgtcgtgcggatttacttccagccaggc
gcggacattcgcaccgcgaccgcgcaggtcacgtcgatctcgcaggccattttgcgtcag
cttccgccgggcatctctccgccgttcatcgtcaactatgacgcctcgaccgtgccgatc
gtccagctcgccctctccggcgaagggctgagcgaacagcagctctacgatctcggcgtc
aatcaaatccgcccgcagctcatcaccgtgccgggcgtcgccatgcccttcccattcggc
ggcaagcagcgtcagatacagatcgacatcgaccctgaggcgctgcgcgctcgcggcctg
tccgccggcgacgtcgcggcggcgattgccgcgcaaacccaaatcatcccggcgggcttc
gccaaggtcggcggcctgcaatacaccgtcaggctcaacaatgcgccgggctcggtcgag
cagttgaacaatctgccagttcgcgtggtcgacggcgcgacgatcaccatgcgcgacatc
gcccaagtccgcgacggcgcgccgccgcaaatgaacatcgtccaagtcgaaggccagcgg
tcagtcctgatgaccgtgctcaagagcggtgcggcctcaaccatcgatatcgtcaatacg
gttcgcgagcgtatcccacagatcaccgagggcctcccggaaacgctgcgcgtccagctt
atcggcgaccagtcggtgctggtgaaggcggccgtctccaccgtggcctatgagggtgtg
ttggccgccgtgctgacctcgctgatgatcctgctgtttctgggatcgtggcgatcgacg
atcatcatcgtgaccacgatacccttggcgatcctcgccgcgttgttggcgctgagcgcg
accggccagacgatcaacatcatgacgctgagcggcttggctctggccatcggcatattg
gtcgacgacgcgatggtcacgatcgagaacatcaactggcaccttgagaaagggaagccg
gttctacgctcgatcatggacggcgcggcgcagatcgtgacgcccgccttcgtgatcgtg
acgtgcatctgcatcgtcttcgtgccgatgttcttcctgccgggcgtcgcaggctatctg
ttcgtgccgctggcactggcggtgatcttctcgatgatcgcctcgttcatcctgtcgcgc
acgctcatcccgacgatggcgatgtatctgctacgcccgcatcgggagggcgaagaggcc
gagcgcgcccgctcgcgcaatccactcgtccggttccagcatcgcttttcgaccgggttc
gacaggcagaaggaccgcttcgggcgggtgctttcccgcgtgatgtccgcacggcgcatc
ttcatcccggcgttcctcggcgcgatggtggcgtcgctgctgctcattcccacacttggc
cgcgacttctttcccactgtggatgctgggcaaatcaccctgcatgtgcgcgcgccggca
ggcacgcgcatcgaggacagcacggcgctgatctcgcgggtgcagacgcgggtgcgcgaa
ttgatccccgccgagcaggttgaatcggtcgtcgccaatgtcggaatgtcctccgcgctg
ctcaacgtcatctacaacaatacggggacggtgggactgaacgagggcgatatcctcatc
tcgctcgggcggaaccgaaccgcgacggacacgcatgtcgccactttgcggcgcgagctg
cccgtgagctttccgggcgttgatttctccttcctgcctgccgacatcaccagccaaatc
ctgaacttcggctcgccagcgccgatcgatatccaggtgcgcggccggaatctcgcggcg
aacgaagcttatgcgcaagcgatcctcaaacgcgttcggaccgtgcccggcctcgccgac
gcccgactccagcaatcctcgcgcgcgccgcagctcaacatcgacatcgatcgctcgcgg
atcgcgcaatacgggctcaaccagcgtgacgtaaccaccagcgtcgcgaccgccctagcc
ggcacgcagcagtctgcgccggtttactggctcaatcccgaaaacggggtgtcctatcct
gtcgtggcgcaagtccccgaactggaggtcgacacgatcgctgcgctggaagcgctgccg
gtttcggcgacgggcgccggggaggcccagacgctgggcggtcttggcgccgtgactcgc
aatacgaccatcaacgtagcgagccgagcagacatccagccggtcatcaacatctatgcc
acgccgcaggctcgcgacctgggcgccgtggccggcgacattcatcgcatcattgccgag
atggatgccgagcgcccggccggcgtaaccgtcacgctggcgggacaatatgagacgatg
aaccacgccttctccggtctcgctttcgggctgatcggcgcgattatcctcatctacctc
gtgatcgtcgtgaccttccagagctggatcgacccgctggtcatcatcggcgcgctgccg
gccgccttcgccggcatcgtctggatgctgttcgtgaccggcacgaccatctccgtgccc
gcgctcaccggcgcgatcatgtgcatgggcgtcgccaccgccaactccatcctggtggtc
agcttcgcacgcgaacgcctagccgagaccggcgacgccacccgcgccgcgatcgaggcg
gcggtggtccgtttccgccccgtgctgatgaccgcgctcgcgatcatcatcggcatgacc
cccatcgcgctcggtatcggcgagggcgccgagcagaacgctccgctcggccgcgcggtg
atcggcggcttgatcttcgcaaccgtggcgacactgctgctcgtgccggcgctgttcagc
atcgcccatcgcaagggcgcgccttcctcacccgcaagggagcttgaactccagcatgtc
tga
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