Stomoxys calcitrans (stable fly): 106081687
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Entry
106081687 CDS
T07664
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
scac
Stomoxys calcitrans (stable fly)
Pathway
scac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106081687
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scac03019
]
106081687
Messenger RNA biogenesis [BR:
scac03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106081687
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
106081687
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_1st
CNOT1_HEAT
DUF4327
Motif
Other DBs
NCBI-GeneID:
106081687
NCBI-ProteinID:
XP_013099290
UniProt:
A0A1I8P1Z0
LinkDB
All DBs
Position
5:89210328..89235447
Genome browser
AA seq
2553 aa
AA seq
DB search
MNLDHLKSTLTQIGNLVKHLNKKNFAETTEQLNQLIEEFGLEADRHCLRCLFVSINFNDP
ALTSTNSPSSSSLSNVQQQQQQQVLLAKLLQIQLELQLNKAAHISNICFAIDSCWPQQKS
LKPSSHFITQIVRITGINKLCECVVSLSLTHSSHSDLRTYANDQLRKGLPELIESYLGKN
QQSAAVISSLHDASLDLIQLLLTCLDLYVVDKRLRQQFVQKLREEFPRERVPLILAPYLY
ASPTSLNAADYADGDGIVSSLAPQNAINTNGFIREVPIEDIYDNLCENIFSQHDYNNIME
TSWINLILEIGYEFTSSLEECKNHLRSGGSTGGNNSGGGGSGGGGAGGNASGAAGGVNNQ
RELQPQDVAKVIGLMCRRHTSLLDCNVNLPTAANFWPQQSSQNSQQQQNANNNNSNDNSA
ANTDKSNNGNDKKDKPAGGNSSAGGTGSTDTTQAWKPDVFVQALKEVAPQLNWKEVCLEL
DHPEFIIKDRIGIDLLLTIFRLATQSNLFPHPECIYRHWQNVEGQFSLIAVMLKNPDLFS
FADYIFSPAPVEMLKTPPDVENKEICAWKSLHLVEVLLYIADHGLYAQVHELLKFPAQHC
PDVLFLSLLHINPPLTALRQELFSQLIPTFLANHPNSGVILASAWNSNNFGMTLRPLIMH
AMSEWYLRGTEYDQVKLSRILDVAQDLKALSTLLNARSFLFVIDLACLASRREYLKLEKW
LSDKIREHGEQFIQAMLKCLQRRCPQITNAKIPDDQLPPKQAQLPPETVNTMLSCLQACI
GNVPHDIAELIMQMTANCSIMANKARAAAAAAVQQGPLVPTQSAMRGHRGLDMNAAGVGG
VGGVPGGVPPPFSANLNAQQMFGPTMDTLSNLTTNIAGLNLGGPNGAFNFGNVLNNLVST
PASPSRLMNPAAASPYPMNPMQMPAPPPAVGGLGRMPPAAPQPTPTPPNPNNPIIDGFQG
PVSKEIEDEANSYFQRIYNHPPHPTLSIDEVLDILQRFKESNNRREQEVYQCMLRNLFEE
YRFFAHYPEKELQITAQLFGGIIERNLVPTFVALGLALRCVLDALRKPEGSKLYYFGITA
LDRFKTRLHTYNKYCEYIRSIPHFKDFPPLLIQYVEFGYLGQEPPPGKLMLMGAGGSGQQ
PPDSIYRSNSVTGNIVTTPTQQKPMVVAHPARMKSIATATNIDTLLVANQEEKITVPPEA
IQDKTAFIFNNLSQLNIPQKVEEIKDIMTKEYWPWMSQYLVLKRASMEFNFHTLYFNFLE
ALMNPDINRYVTKETIRNIKVLLRSDKGVVNFSDRSLLKNLGHWLGMMTLARNKPILQID
LDLKSLLAEAYHKGQQELLFVVPFVAKILESSGKSKVFKSPNPWTMAIMNVLGELHQEPE
LKLNLKFEIEVLCKSLNIDLNKLKPIIYLKDPARYAMIENQMAQPKPKAIEAGPSQQQQQ
QQQQQQQQQPQPQQQPPQPQQPTPTPPHQHPMMTEADAQAIMMANSAGSGGVVPGGGAIP
SPSIPNDQVGPNMMPAPEPRYSYVDINVTNFQLITQHVVLSPNIAFIHVNPNIKHLVLNA
IERTITEWLQPVVDRCVRIAASTTEQIVRKDFALDPEEHRMRTAAHQMVRNLAAGMAMIT
CKDQITQTLNNNLRKAFMTTLPGPPSFQEIEGASIQLTNDNVELACAFIEKTAAEKATPE
VDRRLAADFETRKMAREENSRYFDAQILAYQSERLPEQVRLKMGGVPPNQFAVYAEFARN
IPGFQVMSDRDIALFLPKPQEMPPTFPTDEMGLMYAELASKMETFLNSCLNNNNLQLQAG
KMHALLNALMVTRRIRDNDSALNLLTRCVEGFVEGLINIPEHVEQMKLYRDIHLRILTLL
QNTFGAPATERAITKSVFDIREEARYNVEAIKLLITSHFLNLPQFDVLLRESMDNGNNFL
AVTFAITLMERLLTDERSTSIIAETELLVTIEMLSRLTQHRHRYPEALSHLIDMLFGSSN
TMDAGTFGAVTDRFLAGATQYIHSGMQHVRSNDCDDPPGLQEKTEFLLKDWVGIYSQSHN
LSRETKNFGSFVQKMNLYGILKTDDLITRFFRQATQFCMDLVYRILNDHSHSAAQAKAKI
FHWIDAFVHLIALLVRHSGESGNPTTKINLLNKVLGIVLGILLQDQEVHCNSFQQLGYHR
FFVMLFLELSSPDAVLESLMHSIVTAFSHTYHLLNPSLAPGFCYAWLELISHRIFIGRIL
AQIPQQKGWPLYAQLLLDLFKYLAPFLRNAELAKPVQLLYKGTLRVLLVLLHDFPEFLCD
YHFGFCDAIPPNCIQMRNIILAAFPRNMRLPDPFTPNLKVDMLAETATAPKICSNYVMNI
QPANFKKDLDSYLKARAPVTFLSELRSHLQISNEPGSRYNIPLMNALVLYVGTQAIAHIR
NKNLIPNTSNVAHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCAVLHL
FAEANSEAIQEQITRVLLERVIVSRPHPWGLLITFIELIKNPAYKFWEHDFVHCAPEISK
LFESVARSCMVKSNHPQQMNNMVDEQTEWHIER
NT seq
7662 nt
NT seq
+upstream
nt +downstream
nt
atgaacctagaccatctgaaatcgacgctgacgcagattggtaatttggtcaaacattta
aataagaaaaattttgctgaaacaactgaacaactaaatcagttaattgaagaatttggc
ttagaagcggatcgtcactgtctgcgttgtctatttgtgagtatcaattttaatgacccg
gcattaacgtcaaccaactcgccatcgtcgtcatcattatcaaacgttcaacaacagcaa
caacaacaggtcttacttgctaaactattgcaaattcaactggaactgcaattgaacaaa
gcggcgcatatatcaaatatttgctttgccattgatagctgttggccccaacagaagagc
ctaaagccgtcctcccacttcatcactcaaattgttcgcataaccggcatcaacaagttg
tgtgaatgtgttgtaagcttgtcgctgacacattctagccactcggatttgcgcacatat
gccaatgatcagctgcgtaaaggtctacctgagttaattgagtcgtacttgggtaaaaat
caacagtctgcagctgtcatcagtagcttacacgacgcctcattggatctaattcaactg
ctgctgacctgcttggatttgtatgtggttgataaacgtttacgtcagcaatttgtacag
aaattaagagaggagttccctcgagaacgcgtaccgttgatcttggcaccatatttgtat
gcttcgcccacatctttgaatgctgcggactatgcagatggagatggaatagtatcttcg
ttggcgccacaaaacgctatcaacactaatggctttattagggaagtacccatagaagat
atctatgacaatttgtgcgaaaacatattttcccaacacgactacaacaatattatggaa
acatcttggattaatttaatcctagaaatcggctatgagttcacttccagtctcgaagaa
tgtaaaaatcatctgcgtagtggtggctcgactggtggcaacaatagtggcggcggtggt
agtgggggtggtggtgccggcggcaatgccagcggcgcagctggtggtgtaaacaaccag
cgtgaattacaacctcaggatgtagccaaggtcataggacttatgtgccgacggcacaca
tccctgcttgattgtaatgtgaatttgcccacagcggcaaatttttggccccaacaaagc
tcccagaatagccaacagcaacagaatgctaataacaataacagcaatgacaattccgcc
gcgaacaccgacaaaagtaacaatggaaatgacaaaaaggacaagcccgcaggtggcaat
agctctgctggtggcaccggcagcactgacacaactcaggcctggaaacctgatgttttt
gtgcaggctttaaaagaggttgcaccacaattaaattggaaagaagtttgtttggaactc
gaccacccagagtttataatcaaggatcgaattggcatcgatctactcttgacaattttc
cgcttagccacccaatcgaatctgtttccacatccagaatgcatttatcgtcattggcaa
aatgtggaggggcagttctccctcatagcagtgatgttgaaaaatcccgatcttttctcg
tttgccgactacattttcagccctgcgccggtggaaatgttgaagacccctccggacgtg
gaaaacaaagaaatatgtgcttggaaatcactccacctggttgaggttctactgtatata
gcagatcatggtttatatgcccaagtccatgagttgctgaaattcccggcacaacattgt
cctgatgtgttattcctttctttgctgcatataaatccacctctcacagctttaaggcag
gagttgttcagtcaactcataccaacgtttttagctaatcatcccaattcaggtgtaata
ttggcgagcgcttggaattccaataactttggcatgaccctgaggcctcttataatgcat
gccatgtccgagtggtacttgaggggaacggaatacgatcaggtgaaactctcacggata
ttagatgtagctcaggatctaaaggcattgtctacattgctgaatgcgcgctcgttcttg
tttgtgatcgatttggcatgcttggcttcccgaagggagtatttgaaactcgaaaagtgg
ttaagtgataaaatacgtgaacacggcgaacaattcatacaggcaatgttgaaatgttta
cagagacgttgcccacaaatcacaaatgcgaaaataccagacgaccaattgccgcccaag
caagcccaattgccgccagaaactgtgaacacaatgctctcctgtttgcaggcatgcata
ggcaatgtgccgcacgacattgccgaattgataatgcaaatgacagctaattgctccata
atggccaacaaggctcgagctgctgcggcagccgctgtgcaacaagggccccttgtgccc
acccaaagtgcaatgcgtggccatcgtggcttagacatgaatgcagcgggcgtgggaggt
gttggcggcgtgcccggcggtgtacctccaccgttctcagccaatcttaatgctcaacag
atgtttggtcctaccatggataccttatcaaatctgactaccaatatagctggcctaaat
ttaggtggtcccaatggagcgttcaactttggcaatgtactcaacaatttagtttccaca
ccggcgtctccatctcgtctaatgaatccagctgctgctagcccatacccaatgaatcca
atgcaaatgcctgctccaccacctgctgtgggtgggttgggaagaatgccgccagcagcg
cctcagcccacgccaacgccgcccaatcccaataaccccatcatagacggctttcaagga
cccgtctccaaggagatcgaagatgaagctaattcgtatttccaacgaatctacaaccac
ccccctcatccaacgctctccatagacgaggtactcgacatccttcaacgtttcaaagaa
tcaaacaatcgccgcgaacaggaagtgtaccaatgcatgctgcgaaatctcttcgaagag
tatcgtttctttgcccattaccccgaaaaagagctgcaaataaccgctcaattgtttggt
ggtatcattgaacgtaatctcgttccaacatttgttgccttggggttagcgctgcgctgc
gtcctcgatgccttacgcaaaccggagggatcgaagctttattactttggcataaccgcc
ttagaccgtttcaaaactcgactccatacctacaacaaatactgcgagtacatacgatcc
ataccacacttcaaagatttccctccacttcttatacagtatgtggaattcggctacttg
ggccaggaacctccgcccggaaaattaatgttgatgggggcgggaggttcaggtcaacag
cctccggactctatataccgtagtaactcagtaacagggaatattgttactacgcccact
caacagaagcccatggtggtggcacatccagcacgtatgaagtccatagccacagctacg
aatatcgatacgctattggtggccaatcaagaggaaaaaatcaccgttcctcccgaggcc
atacaagataagactgctttcatcttcaataatcttagtcagctgaatataccacaaaag
gtggaggaaatcaaagatattatgaccaaggagtactggccatggatgtcgcaatatttg
gtgctgaaaagagcctcaatggagttcaatttccatacgctttactttaactttctggaa
gctttgatgaatccggacatcaacagatatgtcaccaaagaaactatacgcaacattaaa
gtgctgctacgctccgacaagggtgtggtcaatttctctgatcgcagtctgcttaaaaat
cttggccattggttgggtatgatgactttggcccgcaacaaaccaattttacaaattgat
ttggatttgaagtctctgttggccgaggcatatcacaaaggccagcaggagttgctgttt
gtagtaccatttgtagcaaaaattctcgaatcctctggaaagtccaaagtatttaagtca
cccaatccctggaccatggccattatgaatgtcctgggagaattgcatcaggagcctgaa
ttgaagttgaatttgaaatttgaaattgaagtactgtgtaaaagtctcaatatcgacttg
aacaagttgaagcctatcatctaccttaaggatcccgcacgatatgctatgatagaaaat
caaatggcccaaccaaagccaaaggcaattgaggcgggaccgtcacagcaacagcagcaa
caacaacagcagcagcagcaacaacagcctcaaccacagcaacagccgccacaaccgcaa
caaccaacacccactccaccccaccagcatccaatgatgactgaagccgatgctcaggct
attatgatggccaactcagctggatccggaggtgtcgtacctggtggcggtgcaataccc
tcgcccagcatacccaatgatcaggtgggacctaatatgatgcccgcgccagaaccgcgc
tactcatacgtcgacattaacgtaacaaatttccaattgattacccaacatgtggtgctc
tcgcccaacatcgctttcattcacgtcaatccaaatatcaagcatttggttttgaatgcc
attgaacgaactataacggaatggctgcagccagtagtggatcgatgcgttcgtatcgct
gcctcaaccacagaacaaattgtgcgaaaggactttgctctcgaccccgaggaacaccgc
atgcgtacggccgcccatcaaatggtgcgtaatttagccgctggtatggctatgataact
tgcaaggatcaaattacgcaaacattgaacaacaatctgaggaaagcgtttatgaccaca
cttcctggtccgccctctttccaagagattgagggtgcttctatccaacttaccaatgac
aatgtggaattggcttgtgcttttattgaaaaaactgcggcagaaaaggctacacccgag
gtggacagacgtttggctgcagacttcgaaaccaggaaaatggcccgcgaagagaatagc
cgttacttcgatgcacaaattttggcctatcagtcagagcgtttgcctgaacaagttcgc
ttgaagatgggaggagtgccacccaaccagtttgccgtttatgccgagtttgcccgcaat
atcccgggcttccaagtcatgagtgaccgtgatatagctttattcctgcctaagcctcag
gaaatgcccccgactttccctactgatgaaatgggtttgatgtatgccgagttggccagc
aaaatggaaacgtttcttaacagttgcttgaacaacaacaatctgcaattgcaggctggc
aaaatgcacgccctccttaatgcgctcatggtcaccagacgcatacgtgacaacgattcc
gcattgaatctactaacacgatgtgtggaaggatttgtcgaaggtctgatcaacataccc
gaacatgtggaacaaatgaaactctatcgggatatacatttgcgaattttgacactattg
caaaatacattcggagctccggccacagaacgggccattacgaagagtgtctttgatata
cgcgaggaagctcgctacaatgtggaagccattaaactgttgataacatcgcatttttta
aatttgccccaatttgatgtgctcttgcgggaatccatggataatggcaataattttttg
gccgttaccttcgctattacattgatggaacgtttgctaacagatgaacgctccacatca
ataattgcagaaacagagcttctggtcaccatagagatgttgagtcgcctgacccagcat
cgtcatcggtatcccgaagctttgtctcacttaatcgatatgctattcggaagtagcaat
accatggatgccggaacattcggtgctgtgaccgatcgatttttggccggcgctactcaa
tacattcattcaggaatgcagcatgtaaggtctaacgattgtgatgacccgcccggcttg
caagagaaaactgaattcctactcaaagactgggtaggcatctattcgcagtcgcacaat
ctctcgcgagaaacaaaaaatttcggttcatttgtacagaaaatgaatttgtatggcatc
ctgaaaaccgatgatttaattacacggttcttccggcaagctacacaattttgcatggat
ttggtgtatcgcattttaaatgaccactcacactcggcagcacaggcgaaggcaaagatc
ttccattggatcgatgcttttgtacacttgattgccttgctggtgcgacattctggcgaa
tctggtaatccaacgaccaaaatcaatttactcaacaaagtattgggcattgttttgggc
atactgttgcaagatcaagaggtccattgcaattcattccaacagctgggctatcatcgt
ttctttgtcatgctattcctggagctgagctcgcccgatgctgttctggaatctctcatg
cacagtattgtcacagcattttcacacacgtatcatctcttgaatccatcgctggcgcca
ggattttgctatgcatggctggagttgatctcacatcgcatcttcatcggacgaatcttg
gcccaaatacctcaacagaagggttggcccctgtatgcccagctactattggatttgttc
aagtatctggcaccattcctacggaacgccgaactagcgaagccagtacaattgttgtat
aaaggaacgctgcgggttctgcttgtcttactccacgacttccccgagtttttgtgtgac
tatcattttggcttctgtgatgccataccaccaaactgtatacaaatgcgcaatatcata
ttggctgcttttccacgcaacatgcgccttcccgatcccttcaccccgaatctgaaggtt
gatatgttggccgagacagccacagctccaaagatctgttcaaattatgtgatgaacatt
caaccggccaattttaagaaggatcttgattcgtatttaaaagccagagctcctgttaca
ttcctttcggagttgcgtagccacttgcagatatcaaatgagccgggatcgcgttacaat
ataccgcttatgaatgccctggtattgtatgtgggtactcaagccattgcacatattaga
aataagaacttaatacccaatacatcgaatgttgcacatagcgcccacatggatatattc
cagaatctggctgttgatctagataccgagggacgttatctgtttttgaatgcaattgcc
aatcaattgcgttatccgaacagtcatacacattacttcagctgtgccgttctacatcta
tttgccgaggccaattccgaggcaatacaggagcaaattacacgagttctcttggagcgt
gtcatcgttagtcgtccacatccgtggggtcttttaattaccttcatcgaattgataaag
aaccccgcctacaaattctgggagcatgattttgtgcattgtgctccagaaatatcaaag
ctctttgaatcggttgcacgttcttgcatggttaagtccaatcatccccaacaaatgaac
aacatggtggatgaacaaacagaatggcacatagaacgataa
DBGET
integrated database retrieval system
