Stomoxys calcitrans (stable fly): 106094597
Help
Entry
106094597 CDS
T07664
Name
(RefSeq) TAR DNA-binding protein 43 isoform X1
KO
K23600
TAR DNA-binding protein 43
Organism
scac
Stomoxys calcitrans (stable fly)
Pathway
scac03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
scac00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106094597
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scac03019
]
106094597
Messenger RNA biogenesis [BR:
scac03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
106094597
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TDP-43_N
RRM_1
RRM_7
RRM_PARP14_3
Motif
Other DBs
NCBI-GeneID:
106094597
NCBI-ProteinID:
XP_013117277
UniProt:
A0A1I8PU56
LinkDB
All DBs
Position
5:complement(5483693..5485941)
Genome browser
AA seq
484 aa
AA seq
DB search
MEFVPVVEEEGDEPIELPTENDKNLLLSTLQAQFPGASGLKYINEENKCYRGIRLNDGKL
YPPSENGWSAHIYHCVFPKENKRKSDDQLENSTAKTKRMESRARCTDLIVLGLPWKTTEE
SLRAYFETFGEVLMAQIKKDVHSGQSKGFGFVRFGSYDVQARVLSNRHSIDGRWCEVKVP
NSKGAPNQIPCKVFVGRCTEDITAEDLKDYFSRFGEVTDVFIPRPFRAFSFVTFLDPEVA
SSLCGEDHIVKGVSLHVSSAAPKYEHHRSYHNTNPRNTHHNNSNENSQSGLFKTKGGPPA
SNSGNNFFSNPPANDGSGMLVGSSTGGPVSRENSYQRGGHRGNYMMTQSPSNSSNTSCQN
RPLDMPNLQTLGINPQGPSQNMGMGLNLNSLPMNTAILAAALNQFGLLGNQLQNQEQGGN
FLSWMAHSSSANNMLANNPNRGPTNTNGGNTTNPTTEATNCNNFVQNLNPQANNPKYGMW
SPSK
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atggaatttgttcctgtggtcgaagaggaaggggatgagccaattgaattgcccacggaa
aatgataaaaatttacttttatctactttgcaagcacaatttcctggtgcatctggtcta
aaatacataaacgaagaaaacaaatgctatcgtggaatccgtttaaatgatggaaagtta
tatccacccagtgaaaatggttggtcagcacacatttatcattgtgtttttccaaaagag
aacaaaaggaaaagtgatgaccagttggagaactccacagccaaaaccaaacgaatggag
tcaagggcacgttgcacagatctaattgtattgggattgccatggaaaacaacagaggaa
agtttacgtgcttattttgaaacttttggagaggtactgatggcacaaataaagaaagat
gtacattccggacagtcaaaaggatttgggtttgtacgatttggatcttacgatgtgcaa
gcacgtgttttatctaatcgtcactcgatagacggccggtggtgtgaagtgaaagtaccc
aattcgaagggagctcccaatcaaataccctgtaaagtatttgtaggaagatgcacagag
gacataactgcagaagatctaaaggattatttctcaagatttggtgaagttactgatgta
tttattcctagaccattcagagcatttagttttgtaacttttcttgatcccgaagttgct
tcatcgttgtgcggggaggatcatattgttaagggagtttctttacacgtctcaagtgca
gctcccaagtatgaacaccatcgtagttaccacaacacaaatccgagaaacacacaccac
aataacagcaatgaaaatagccaaagcggcttgtttaaaacgaagggaggaccacccgca
agcaatagtggaaataactttttcagcaatccgcctgccaacgatggatcaggtatgttg
gtaggaagcagtacaggtgggcctgtaagtcgcgaaaactcttatcagcgaggaggacat
aggggaaattatatgatgacacaaagtcccagcaacagtagcaacaccagctgccaaaat
cgacctctggacatgccaaacttgcaaacgctgggtattaaccctcaaggtccctcacaa
aatatgggaatgggacttaatttaaattccttacctatgaacacagccatattagctgct
gcacttaatcaattcggtctattgggcaatcaacttcaaaatcaggagcagggtggcaac
tttctttcctggatggctcattcaagcagtgctaacaatatgctcgcaaataatccaaac
agggggccaacaaacaccaatggtggaaataccacaaatccaacaacagaagcaactaat
tgtaataattttgttcaaaatcttaatccccaggctaataatccgaaatacggcatgtgg
tcgccttccaaatga
DBGET
integrated database retrieval system
