Sellimonas caecigallum: ACI3DM_07635
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Entry
ACI3DM_07635 CDS
T10803
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
scag Sellimonas caecigallum
Pathway
scag03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
scag00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ACI3DM_07635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scag03021
]
ACI3DM_07635
03400 DNA repair and recombination proteins [BR:
scag03400
]
ACI3DM_07635
Enzymes [BR:
scag01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ACI3DM_07635
Transcription machinery [BR:
scag03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ACI3DM_07635
DNA repair and recombination proteins [BR:
scag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ACI3DM_07635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
XKQ20271
LinkDB
All DBs
Position
1575796..1579665
Genome browser
AA seq
1289 aa
AA seq
DB search
MEKNRIRPMKSGRSSRMTYSRQKEVLEMPNLIEVQKDSYQWFLDEGLKEVFEDISPITDY
SGQLSLEFVDFTLCEDDVKYTIEECKERDATYAAPLKVRVRLYNKETDEINEHEIFMGDL
PIMTKTGTFVINGAERVIVSQLVRSPGIYYGIAHDKIGKELFSCTVIPNRGAWLEYETDS
NDVFYVRVDRTRKVPITVLIRALGIGTNPEIIEMFGEEPKILASFGKDTAENYQEGLLEL
YKKIRPGEPLAVDSAESLITSMFFDPRRYDLAKVGRYKFNKKLLLKNRITGHVLAKDVVS
PLTGEILAEAGTEVTRELADTIQNNAVPYVWISNESEERDIKVLSNMAVDLKEVTGIDPH
EVGVTELVYYPVLAEILEETAGDVDELKAAVKKSIHELIPKHITKEDIFASINYNMHLEY
GIGNDDDIDHLGNRRIRAVGELLQNQYRIGLSRLERVVRERMTTQDLEGISPQSLINIKP
VTAAVKEFFGSSQLSQFMDQNNPLGELTHKRRLSALGPGGLSRDRAGFEVRDVHYSHYGR
MCPIETPEGPNIGLINSLATYARINQYGFVEAPYRKIDKSDPENPVVTDEVVYMTADEED
NYHVAQANEQLDAEGHFVRKNVSGRYREETQEYERSKFDYMDVSPKMVFSVATALIPFLE
NDDANRALMGSNMQRQAVPLLTTEAPVVGTGMEEKSAVDSGVCVVAEEGGIVERSASTEI
IIKQDGGNRKKYKLTKFLRSNQSNCYNQRPIVFKGDRVEKGEVIADGPSTSNGEMALGKN
PLIGFMTWEGYNYEDAVLLSERLVQDDVYTSVHIEEYEAEARDTKLGPEEITRDIPGVGD
DALKDLDDRGIIRIGAEVRAGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLK
VPHGEYGIVVDAKVFTRENGDELSPGVNQAVRIYIAQKRKISVGDKMAGRHGNKGVVSRV
LPVEDMPFLPNGRPLDIVLNPLGVPSRMNIGQVLEIHLSLAAKALGFNIATPVFDGANEN
DIMDTLDLANDYVNLSWEEFEEKHKEELLPEVMQYLYDNREHRKLWKGVPLSRDGKVRLR
DGRTGEYFDSPVTIGHMHYLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEM
EVWALEAYGASYTLQEILTVKSDDVIGRVKTYEAIIKGDNIPEPGIPESFKVLLKELQSL
GLDVRVLKDDNTEVEIMETSDYGETNLNAIIEGDRRYGGDRESYGEHGFSQQEFQGEELV
DIEEEPEEEELDFSDDDFSIEFDEMSDEE
NT seq
3870 nt
NT seq
+upstream
nt +downstream
nt
atggagaaaaacagaattcgtcccatgaaaagcggaagaagttcccgtatgacttattcc
agacaaaaagaagttcttgagatgccaaatctgattgaagtccagaaagattcctatcag
tggttccttgatgaaggactgaaggaagtgttcgaggacatttccccgatcacagattac
agtggacagctcagtctggaatttgtggattttacattatgtgaagacgatgtgaaatat
acgatcgaggaatgtaaagagcgtgacgcgacatatgcggcacctttgaaagtaagggta
aggctttataataaggaaacagatgaaatcaatgagcacgaaatctttatgggcgatctg
cctatcatgacgaagacaggaacgttcgtgatcaacggtgcggaacgtgttatcgtaagt
cagcttgtacgttccccgggtatctattacggaattgcccacgacaagatcggtaaagaa
ttgttctcatgtacggttattccgaaccgtggtgcatggcttgaatatgaaacagactcc
aatgacgttttctatgtaagagtagatagaacaagaaaggtaccgattacggtattgatc
cgtgcattgggtatcggcaccaatccggaaatcatcgagatgttcggtgaagaaccgaag
atccttgcaagtttcgggaaagatacggcagagaattatcaggaaggtcttctggagctc
tacaagaagatccgtccaggcgaaccgcttgctgtggacagtgcagaaagcctgatcaca
agtatgttctttgatccgagaagatacgatcttgcaaaagtaggacgttataaattcaac
aaaaagctgctcctcaagaacaggatcacaggccatgtccttgcaaaagatgtggtaagt
ccgcttacaggggaaatcctcgcggaagcaggcacagaagtgaccagagagcttgcagat
acgattcagaataatgcagttccgtatgtgtggatcagcaacgaaagcgaagaaagagat
atcaaagtcctttccaatatggctgttgacctcaaagaagtgactggaatcgaccctcat
gaagtgggagtgacagaacttgtttactatccggtactggctgaaattctggaagagaca
gctggagatgtggatgaactgaaggctgctgtcaagaagagcattcatgaactgattccg
aagcatattacaaaagaagatatttttgcatctatcaactacaacatgcatctggaatac
ggaattggaaatgatgacgatatcgaccacttaggaaacagacgtatccgtgcggtagga
gaacttctccagaatcagtaccggatcggtctttccagactggagagagtggtgcgtgag
agaatgacgacacaggatctggaaggcatctctccgcagtctctgatcaatatcaaaccg
gttactgcggcggtaaaagagttctttggatcttctcagctttctcagttcatggatcag
aataacccgctcggcgagctgacacacaagagacgtctgtctgcacttggaccaggaggt
ctttcaagagaccgtgccggattcgaggtccgcgacgttcattattcccattacggaaga
atgtgtccgattgagacgccggaaggtccgaacatcggtctgatcaactctcttgcgaca
tatgcaagaatcaaccaatacggattcgttgaagctccgtacagaaagatcgacaaatcc
gatccggagaatccggttgtcacagacgaagtagtctacatgacagcggacgaggaagac
aattaccatgtggcacaggccaacgagcagctggatgcagaaggacattttgtcagaaag
aatgtatctggtcgttatcgtgaagagacacaggaatacgaaagaagcaagttcgattac
atggacgtgtctccgaagatggtattctctgtggctacagcccttatcccattccttgaa
aacgacgatgctaaccgtgcgctcatgggatcaaacatgcagcgtcaggccgttccgctt
ctcacaacagaagctccggtagtaggaacaggtatggaagaaaaatcagcggttgactcc
ggtgtgtgcgttgtcgctgaggaaggcggtatcgtagagcgttccgcatccacagaaatc
atcatcaaacaggatggtggaaacagaaagaaatataaacttacaaagttcctgcgaagc
aaccagtccaactgctacaatcagaggccgatcgtattcaaaggggacagagtggaaaag
ggagaagtcattgcagacggaccatccacatccaacggcgagatggcgcttggaaagaac
ccgctcatcggtttcatgacatgggaaggttataactacgaggatgctgtattgttaagc
gaacgtcttgtacaggacgacgtatacacatccgttcatatagaagaatacgaagcagaa
gcgcgtgacacaaaactgggaccggaagagatcacaagagatatcccgggtgtcggcgac
gatgcgctgaaagatcttgatgacagaggtatcatccgtatcggtgcggaagtgcgtgcc
ggagatatccttgtcggaaaggtaactccgaaaggagagacagagcttaccgcagaagaa
agacttctgagagcgatctttggagaaaaagcccgcgaagtaagagatacttccctcaaa
gtaccgcacggggaatacggtatcgttgtggatgcaaaagtgttcacaagagaaaatgga
gacgaattgtctcctggcgtaaaccaggcagtacgtatctatattgcacagaagagaaag
atttccgtcggagataaaatggccggacgtcacggtaacaagggtgtcgtttcccgcgta
cttccagtagaagatatgccgttcctgccgaacggccgcccgcttgatatcgtgctgaac
ccacttggggtgccttcacgtatgaacatcggacaggtgctggagatccacttgagtctt
gcggccaaagcacttggcttcaatatcgcaacaccggtatttgatggggcgaacgagaac
gatatcatggatacactggatctggcaaacgattatgtaaatctttcctgggaagagttt
gaagagaaacataaagaagaacttcttccggaagtgatgcagtatctttatgacaacaga
gaacatagaaaactttggaagggtgtgccgctttccagagatggtaaagtacggctgaga
gacggacgtacaggagaatactttgacagccctgttacgatcggacacatgcattatctg
aagctccaccacctggtagacgacaagatccatgcacgctccacaggtccttactcactg
gtaacacagcagccactgggtggtaaggcacagtttggtggacagcgtttcggggaaatg
gaagtttgggcgctggaagcatacggcgcatcctacacgctgcaggaaatcctcacagtg
aagtccgacgacgtcatcggacgtgtgaagacgtacgaagcgatcatcaagggcgacaac
attccggaaccaggtattccggaatccttcaaagtacttctcaaagagcttcagtcactg
ggactggatgtgcgtgtcctcaaagatgacaacacagaagtggagatcatggagacatct
gattatggagaaacaaatctcaatgccatcatcgaaggagacagaagatatggcggcgac
agagagtcttacggagaacacggattttcacagcaggaattccagggcgaagagctggta
gacatcgaagaagagccggaagaagaggaactggattttagcgacgatgacttttcgatt
gaattcgacgaaatgtctgatgaagaatag
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integrated database retrieval system
