Streptomyces californicus: I6J39_21330
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Entry
I6J39_21330 CDS
T07611
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
scal
Streptomyces californicus
Pathway
scal03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
scal00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
I6J39_21330 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scal03021
]
I6J39_21330 (rpoB)
03400 DNA repair and recombination proteins [BR:
scal03400
]
I6J39_21330 (rpoB)
Enzymes [BR:
scal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
I6J39_21330 (rpoB)
Transcription machinery [BR:
scal03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
I6J39_21330 (rpoB)
DNA repair and recombination proteins [BR:
scal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
I6J39_21330 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
QRV29556
LinkDB
All DBs
Position
4838051..4841536
Genome browser
AA seq
1161 aa
AA seq
DB search
MAASRNASTANTNNGASTAPLRISFAKIKEPLEVPNLLALQTESFDWLLGNAAWKARVEA
ALDSGQDVPTKSGLEEIFEEISPIEDFSGSMSLTFRDHRFEPPKNSIDECKERDFTFAAP
LFVTAEFTNNETGEIKSQTVFMGDFPLMTNKGTFVINGTERVVVSQLVRSPGVYFDSSID
KTSDKDIFSAKIIPSRGAWLEMEIDKRDMVGVRIDRKRKQSVTVLLKALGWTTEQILEEF
GEYESMRATLEKDHTQGQDDALLDIYRKLRPGEPPTREAAQTLLENLYFNPKRYDLAKVG
RYKVNKKLGADEPLDAGVLTTDDVIATIKYLVKLHAGETETIGESGREIVVETDDIDHFG
NRRLRNVGELIQNQVRTGLARMERVVRERMTTQDVEAITPQTLINIRPVVASIKEFFGTS
QLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGFEVRDVHPSHYGRMCPIETPEGPNI
GLIGSLASYGRVNAFGFIETPYRKVVDGQVTDDVDYITADEEDRFVIAQANATLNDELRF
TEPRVLVRRRGGEVDYVPGTDVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMMRQ
AVPLIKSEAPLVGTGMEYRCATDAGDVLKAEKDGVVQEVSADYITVTNDDGTYTTYRIAK
FMRSNQGTSVNQKVVVSEGDRIVADQVLADGPATENGEMALGKNLLVAFMPWEGHNYEDA
IILSQRLVQDDVLSSIHIEEHEVDARDTKLGPEEITRDIPNVSEEVLADLDERGIIRIGA
EVVAGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGEIGKVIGVRVFD
REEGDELPPGVNQLVRVYVAQKRKITDGDKLAGRHGNKGVISKILPIEDMPFLEDGTPVD
IILNPLGVPSRMNPGQVLEIHLGWLASRGWDVSGLGDEWAQRLQAIGADQVAPGTNVATP
VFDGAREDEISGLFEATIPNRDGDRLVQPSGKAQLFDGRSGEPFPDPVSVGFMYILKLHH
LVDDKLHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSDD
VTGRVKVYEAIVKGENIPEPGIPESFKVLIKEMQSLCLNVEVLSSDGMSIEMRDTDEDVF
RAAEELGIDLSRREPSSVEEV
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
ttggccgcctcgcgcaacgcctcgaccgcgaatacgaacaacggtgccagcaccgccccg
ctgcgcatctcttttgcaaagatcaaggagcccctcgaggttccgaacctcctcgcgctg
cagaccgagagctttgactggctcctcggcaacgccgcctggaaggctcgcgtcgaggct
gctctggacagtggacaagacgtccccaccaagtccggcctcgaggagatcttcgaggag
atctccccgatcgaagacttctccgggtcgatgtcgctcacgttccgcgaccaccgcttc
gagcccccgaagaactcgatcgacgagtgcaaggagcgcgacttcacgttcgccgcgccg
ctcttcgtcacggccgagttcaccaacaacgagaccggcgagatcaagtcccagacggtc
ttcatgggcgacttcccgctcatgaccaacaagggcaccttcgtcatcaacggcaccgag
cgtgtcgtcgtgtcgcagctggtccgctcgccgggtgtctacttcgactcctccatcgac
aagacgtccgacaaggacatcttctccgccaagatcatcccctcccggggcgcctggctg
gagatggagatcgacaagcgcgacatggtcggtgtccgcatcgaccgcaagcgcaagcag
tccgtcaccgtcctcctgaaggctctcggctggaccaccgagcagatcctcgaggagttc
ggcgagtacgagtccatgcgcgccaccctggagaaggaccacacccagggccaggacgac
gcgctgctcgacatctaccgcaagctgcgtccgggcgagccgccgacgcgcgaggccgct
cagacgctgctcgagaacctctacttcaacccgaagcgctacgacctcgcgaaggtcggc
cgctacaaggtgaacaagaagctcggcgccgacgagccgctggacgccggggtgctcacc
accgacgacgtcatcgcgaccatcaagtacctggtcaagctgcacgccggtgagaccgag
acgatcggcgagtccggccgggagatcgtcgtcgagaccgacgacatcgaccacttcggc
aaccgtcgtctgcgcaacgtcggcgagctcatccagaaccaggtccgcacgggtctggcg
cggatggagcgcgtcgtgcgcgagcgcatgaccacccaggacgtcgaggcgatcacgccg
cagaccctgatcaacatccggccggtcgtcgcctccatcaaggagttcttcggcaccagc
cagctgtcgcagttcatggaccagaacaacccgctgtcgggtcttacccacaagcgccgc
ctgtcggcgcttggcccgggtggtctctcccgtgagcgggccggcttcgaggtccgagac
gtgcacccgtcccactacggacgcatgtgcccgatcgagacccccgaaggcccgaacatc
ggtctgatcggttcgctcgcctcgtacggccgcgtcaacgcgttcggcttcatcgagacg
ccgtaccgcaaggtcgtcgacggccaggtcaccgacgacgtcgactacatcaccgccgac
gaggaggaccgcttcgtcatcgcccaggcgaacgcgaccctcaacgacgagctgcgcttc
accgagccgcgcgtcctggtccgccgtcgtggcggagaggtcgactacgtgcccggcacg
gacgtcgactacatggacgtctcgccgcgccagatggtgtccgtcgccaccgcgatgatc
cccttcctggagcacgacgacgccaaccgcgcgctcatgggcgcgaacatgatgcggcag
gcggtgccgctgatcaagtccgaggccccgctggtcggcaccggcatggagtaccgctgc
gccaccgacgccggcgacgtcctcaaggccgagaaggacggtgtggtccaggaggtctcc
gcggactacatcaccgtcacgaacgacgacggcacgtacaccacgtaccgcatcgccaag
ttcatgcgctccaaccagggcacctcggtcaaccagaaggtcgtcgtctccgagggcgac
cggatcgtggccgaccaggtgctcgccgacggaccggccaccgagaacggtgagatggcc
ctcggcaagaacctgctcgtggcgttcatgccgtgggagggtcacaactacgaggacgcg
atcatcctgtcgcagcgcctcgtgcaggacgacgtcctctcctcgatccacatcgaggag
cacgaggtcgacgcccgtgacaccaagctcggccccgaggagatcacccgggacatcccg
aacgtctccgaggaggtcctcgccgacctcgacgagcgcggcatcatccgtatcggtgcc
gaggtcgtcgccggcgacatcctcgtcggcaaggtcacgcccaagggtgagaccgagctg
acccccgaggagcgcctgctccgcgcgatcttcggtgagaaggcgcgcgaggtgcgcgac
acctcgctgaaggtgccgcacggtgagatcggcaaggtcatcggcgtccgcgtcttcgac
cgcgaagagggcgacgagctgccgccgggcgtgaaccagctggtccgcgtctacgtcgcg
cagaagcgcaagatcaccgacggtgacaagctcgccggccgtcacggcaacaagggcgtc
atctccaagatcctgccgatcgaggacatgccgttcctggaggacggcaccccggtcgac
atcatcctcaacccgctgggtgtcccgtcccgaatgaacccgggacaggtcctggagatc
cacctcggctggctcgccagccgcggctgggacgtctccggcctcggtgacgagtgggcc
cagcgcctgcaggccatcggcgccgaccaggtcgcccccggcaccaacgtcgccacgccc
gtcttcgacggtgcgcgcgaggacgagatctccggtctcttcgaggccacgatccccaac
cgcgacggcgaccgcctggtccagccctccggcaaggcccagctgttcgacggccgctcc
ggcgagccgttcccggacccggtctcggtcgggttcatgtacatcctcaagctgcaccac
ctggtcgacgacaagctccacgcccgttcgaccggcccgtactcgatgatcacccagcag
ccgctgggtggtaaggcgcagttcggtggtcagcgcttcggtgagatggaggtgtgggcc
cttgaggcttacggcgccgcgtacgccctccaggagctcctgacgatcaagtccgacgac
gtgaccggccgcgtgaaggtctacgaggccatcgtcaagggcgagaacatccccgagccc
ggcattcccgagtccttcaaggtgctcatcaaggaaatgcagtcgctctgcctcaacgtg
gaggtgctgtcctcggacggcatgtccatcgagatgcgtgacaccgacgaggacgtcttc
cgcgcggcggaggagctcggtatcgacctgtcccggcgcgagccgagcagcgtcgaagag
gtctga
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integrated database retrieval system
