Struthio camelus australis (South African ostrich): 104152564
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Entry
104152564 CDS
T08512
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-4(VI) chain-like
KO
K06238
collagen type VI alpha
Organism
scam
Struthio camelus australis (South African ostrich)
Pathway
scam04510
Focal adhesion
scam04512
ECM-receptor interaction
scam04518
Integrin signaling
scam04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
scam00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104152564
04518 Integrin signaling
104152564
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
104152564
09142 Cell motility
04820 Cytoskeleton in muscle cells
104152564
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
scam04147
]
104152564
00536 Glycosaminoglycan binding proteins [BR:
scam00536
]
104152564
Exosome [BR:
scam04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
104152564
Glycosaminoglycan binding proteins [BR:
scam00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104152564
Hyaluronan
Extracellular matrix or blood plasma proteins
104152564
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
VWA_3
Kunitz_BPTI
vWA_SIBA-E
VWA_CoxE
DUF1194
C19orf12
Motif
Other DBs
NCBI-GeneID:
104152564
NCBI-ProteinID:
XP_009686261
LinkDB
All DBs
Position
Unknown
AA seq
2542 aa
AA seq
DB search
MDDWKPLLILLFVTTCCSIDAQQTACRKATLADIVFLVDTSASIGQENFQKVKKFLSTLV
SSLDIGLDAVRVGLAQYSDETYQEFFLNQYLLKSDVLKQIEDLPYRRGETYTGAALDFVS
TVYFTESAGSRAKGYIPQVAVLITNGESSDEVEEPARKLRDRDISIYVVAIGVQNKAEMK
QIASKPFNKFLYSIGNFDDLQDLSTKLLGNFCFAVKSQIEAFAKKYADVIFLVDSENMTP
STFEEVKHLISQTVSHLDVGLNKYSIGLAQFSGIGHTEFLLNTYENKEEVLDHIQHSVAF
SGGSSRTGSALEFLQETFFMDGAGSRLSEGTPQVVVVITPSGSRDSITAAAWALEEMGVK
VVSVDVGNSDREEAKVRVPSTMAYQIYEGESIDLVWQNIVSDMEASIQKLYDLDASVPAV
CSSATIADIVFLVEESSKIGAKNFQLIRAFLLKIVNALDIGPDNVRVGLVLYSNEPRLEF
SLNTFKDKSEILNYLKNLPYQGGQTYTGVAIEFLRKKVFTQEAGSREKQGVQQIAVVITN
GQSLDDYTEPASKLRRKGVTVYAVGIQNITENSKLDKIATYPPRKHVFSLKFFLQLSNIG
WKIKKRLCNEIVTKTFVVPLQLRSLKEGCVDTEEADIYFLIDGSGSIYPSDFEDMKTFMN
EMIRMFQVGASSVRFGVVQYSDEPRTEFMIGQHNQMTRLTQAIRNINQIGGGTRTGNALR
SMKSLFRMAARENVPQILIVITDGKSQDKVNQAAKELRQQEIVIYAIGVKEAVQKELAEI
AETKDRIFFVNNFDSLKLIKHDIVRDICSANVCKNMRADIVFLVDSSESIRPAEFQKVKD
FMQSFVTKVDVGLDNVRIGLLQFSSEMREEFQLDRYNTMTDLQRAIQEVQQIKSGTLTGK
ALTFAASYFDQSRGGRPELKQYLIVITDGESQDPVKTPARAIRDKGIAIYAIDMLQANNS
QLVEITGTQDKVFFENDLNFLEKQILFEICNVESLCKRAEVADIMFVVHGSSGITDLQFQ
NVQHLMEAIVNDSMVGVDKVQFGVLVYSSKQEVHFSLNSYFSKSQIREAIFNLKPLPGQP
FTARALSFARQRFGMSYGGRASSLAVSRILILITDEPTVPSDRVNLPAAARALKDDGIDL
VAVGVNTASRAELQEVTGDQERLFFAQSYDSLENIHENLMQIVCEKSQPVCSNQVADLVF
LMDGSESISKSNFSIMKTFMKEIVDSFVISKDKVHVGVVQYSQDPQKEFSLNDFYTDTII
KEQIDSIEQLQSSTFTGKGLRFVRSLFEPANGGRNNQGVSQNLVVITDGYSADKVEDAAQ
ALRSDGIHISAVGIGIINSFELLQIAGDERRVYTVENFDALKAIKRNIVDEVCESGDPPS
QDCNIDLSIGIDISGRIRPVSTLLLKQKLQAFLPKLLLQMKSLPSVSCNVGSPVNVKFKF
QVLVWTNQFIFDSDLEDYNEEIIQKFLDAQTTVDTYLNANILQTLWEKFFSVTSAKVKVL
LLFSDGLDDSLENLRKAVNSLRLKGLDALLIVGVDSTQNLTELREIEFGRGFGYSEPLSV
GFADIESILQRNLDIIAERKCCNVVCKCLGENGDHGNQGHPGTKGSTGYRGSPGHPGEEG
GIGERGPVGFNGTQGERGCSGARGHKGSRGYRGSQGEYGESGFDGTDGEQGEHGSPGPSG
EKGRPGKRGRKGSTGESGERGETGLRGDRGDPGISNNVPGPMGEKGNPAQQGDPGPQGLQ
GEQGDAGADGAEGRRGPPGIKGEQGDLGESGYPGDPGLPGPQGPRGPQGIRGPPGPQGMP
GSLASLGPPGPPGSVGKQGARGAKGEPGDPGEKGIVGPAGQRGMPGMDGRDVYGPEGSKG
AKGQSGFIGYPGPEGEEGDPGIPGAEGPKGVRGRRGNAGTPGSVGDVGDQGPPGPMGTKG
PRGTITMEPCELVNFTRENCPCSSDTDTCPVYPTEVVFALDMSEDVTPAAFERMRNIVMS
LLRTIKISASNCPTGARVSIVSFNTNTRYLIRFSEFQKSNLLLQAVQRVPLERSTGKRNI
GAAMRFVARNVFKRVRQGILTRRVAIFFANGPSQDDTVISTAALELSALDIIPVVIAFSE
VPNVRRAFSIDDTRRFQLFVWERQQSESLESITYCTLCYDKCKPSTNCEVPIPPPVLVDM
DITYIMDSSCSISSEEFQRAKDFVSNMLDQFVIASQPSESYGGTRVALVQQAPRGELPDR
SQSPVALEFDLVTYNNKDLMKKHIQESVQQLEGPSTIASALQWTVENVFFKAPRQRKHRV
IFTIVGSKTSMWDRERLREISLGAKCQGFTLFTLALGNDVSESELIELSSCPVDQHLLSL
GRVSTSEMAYAQRFSRAFLNLLQQEINSYPSPELQEECESLDRGDTQQQVSAIERVPFPG
SDEASYSHDLEEVETTENRVLEKVITTTTEPVYTLPKMRYGYGKNEYFTQEDSKEKKSQK
YGDAQKENEENLEATVETRAAYKDYDVCDLLQDSGECQDXVLKWYYNKGQKTCGQLWYXG
CGGNKNRFETQEECKVLCIESS
NT seq
7629 nt
NT seq
+upstream
nt +downstream
nt
atggatgactggaaaccacttcttattcttctctttgtaaccacctgctgctctatagat
gcacagcagactgcttgcagaaaagccactttggcagacattgtctttctagtggataca
tcagcaagcattggccaggaaaactttcagaaggtgaagaaattcctctccactttggtt
tcaagccttgacattggccttgatgcagtccgagttgggctggcacagtacagtgatgag
acttaccaagagttctttctgaatcaatatttgctgaaaagtgacgttctgaagcagatt
gaggatttgccatataggaggggagaaacttacacaggtgcagctctggattttgtcagc
accgtgtatttcactgaatctgctggtagcagagctaagggttacatcccacaggtagcc
gttctaatcaccaatggagaatccagtgatgaagtcgaagagcctgccaggaaactgaga
gacagagacatctctatctatgtggttgcaattggtgtccagaataaagctgagatgaag
caaatagccagcaaaccttttaataaatttctgtatagcattggtaattttgatgatctt
caagacctctccacaaaacttttgggaaacttctgctttgcagttaaaagccaaatagaa
gcatttgcaaaaaaatatgctgatgttattttccttgttgactctgagaatatgacgcct
tcaacttttgaggaagtgaaacatttaatctcccagacagtcagccatctagatgttggg
cttaacaagtacagcattggcctagcccagtttagtgggataggacacactgagtttttg
ctgaacacgtatgaaaataaagaagaggtacttgaccacattcagcatagtgttgcattt
tctggaggctcctcgaggactggaagtgccctggagttcttgcaggaaacctttttcatg
gatggtgctggaagccgactcagtgaaggcactccacaagttgtagtggtcatcacaccc
tccggatccagagacagtatcacggcagcagcttgggcgttagaagagatgggggtaaaa
gttgtctcagttgatgttggaaactctgatagggaagaagcaaaggtgagagttccctcc
accatggcttaccagatttatgaaggagaaagtattgatctcgtgtggcaaaacattgtc
agtgatatggaagcctccattcagaagctttatgacctcgatgcaagtgtgccagcagtg
tgttccagtgcgactattgcagatattgtgtttcttgtggaagaatccagcaaaattggg
gcaaaaaacttccagctcattagggcttttctgttaaaaattgttaatgccctggatatt
ggcccagacaatgtaagagttggattagtactatacagtaatgaaccaaggctagagttc
agcctgaacacattcaaggacaaatcagaaatcctgaactatctgaagaacttaccatat
caaggcgggcaaacatacactggagtagctattgaattcctgaggaagaaggtttttact
caagaagcaggtagcagggaaaaacaaggagtgcagcaaatcgctgttgttatcactaat
ggccaatccttggatgattacactgaaccagcatctaaactaaggcgtaaaggtgttact
gtctatgctgtgggcatccagaatatcacagagaatagcaagctcgataaaattgcaact
tatcccccaaggaagcacgtcttcagcctgaagttttttctacagctgtcaaatattgga
tggaaaataaaaaaacgactttgtaatgagattgtgacaaaaacttttgtagtcccatta
caattgcggagtctgaaagaaggttgtgtagacacagaggaagctgacatttatttcttg
attgatggctctggcagcatatatccatctgatttcgaggacatgaaaacattcatgaat
gagatgatcaggatgtttcaagttggtgccagcagtgttcgctttggcgtggttcagtat
tcagacgagccgaggacagagttcatgattggccagcataaccaaatgacgaggttaaca
caggcaattaggaatatcaatcaaataggtggaggcacccgaactggaaatgctttaagg
tctatgaagagtctattcagaatggctgccagggaaaatgttccacagatccttatagta
attacagatggaaaatcccaagataaggtgaatcaggcagcaaaagaattgaggcaacaa
gaaattgttatatatgccattggtgttaaggaggctgttcaaaaagagctggcagaaata
gcagagacaaaagacagaatattttttgtgaacaactttgattccctgaagcttattaaa
catgacattgtgcgagatatctgttcagcaaatgtctgcaagaatatgagagctgacatt
gttttcctggtggacagctcagagagtattcgtccagctgagtttcagaaggtgaaggat
ttcatgcagtcatttgtgaccaaagtggacgttgggcttgataatgttcgaatcggcttg
ctgcaattcagctctgaaatgagagaagagttccagcttgacagatataacaccatgact
gatctgcagagagccattcaggaagtgcagcagattaaatcaggaacacttactgggaaa
gcgctgacctttgctgcctcttactttgaccagtctaggggagggcgtcctgaattaaaa
cagtacctaatagtgatcactgatggggaatcccaagatccagtgaaaaccccagccagg
gccatacgggacaaaggtatcgccatctatgccattgacatgctccaggcaaacaattcc
cagcttgtggagatcactggcactcaagacaaagtattctttgagaatgaccttaacttc
ctggaaaagcagattctctttgaaatttgcaatgtagaaagtttgtgcaaaagggcagaa
gttgccgatatcatgtttgtagtgcatggatcatctggcattacagacctgcagttccag
aacgtgcagcatctcatggaagcaatagtcaatgactcaatggttggagtggacaaagtt
cagtttggtgttttggtgtatagctccaagcaggaggtgcatttctcactgaattcatac
ttctccaagtctcagatcagagaagcaatattcaacttgaagcctctgccaggccagccc
ttcacagcaagggctttgagctttgccaggcaaagatttggtatgagctatggtggacgt
gcatcttctcttgctgtctccaggatcctcattcttattactgatgaaccaactgtacca
tcggatagagtcaaccttcctgcagctgcaagagctttgaaggatgatggaatcgattta
gttgctgttggagtgaacacagcaagcagagcagagcttcaagaggttactggagatcaa
gaacgattattctttgcacaaagctatgattcactggaaaacatacacgaaaatcttatg
cagatagtgtgtgagaaatctcagccagtttgcagcaatcaagtagcagatctggtattc
ttgatggatgggtcagaaagtatatcaaaaagtaacttttctatcatgaagacgttcatg
aaggaaattgtggacagttttgttatttcaaaggacaaagtacatgttggggtagtccag
tacagccaagacccccaaaaagaattttctcttaatgacttctatactgacaccatcata
aaggaacagatcgacagcattgagcagttgcagtcctctacattcactggcaaagggctg
aggtttgtccggagcctttttgagcctgccaatggaggccgcaataaccaaggagtctca
cagaaccttgttgtgattacagacgggtactctgctgacaaggtggaggatgcagcacaa
gctttgaggagcgatgggatacatatctctgcagttggcatagggattataaattctttt
gagctgcttcaaatagcaggtgatgaaaggagagtgtacacagtggagaactttgatgca
ttgaaagctatcaagaggaatattgttgatgaggtctgtgaatctggagatcctcctagc
caggactgcaacatagatctttctataggaattgatatttcagggcgcatacgaccagta
tccacactgcttctgaaacagaaattacaagcgtttctccccaagcttttactccagatg
aaatcactgccaagtgtcagttgtaatgttggctctccagtcaacgttaagttcaagttc
caagtgctggtgtggaccaaccaattcatctttgactctgacttggaagactataatgaa
gagatcatccagaagttcttagatgcacagaccactgtagacacctaccttaatgcaaac
atcttacaaaccctttgggagaagttctttagtgtgacctctgctaaagtgaaggttctg
ttactattttccgatgggctggatgattcactggaaaatctaagaaaagcagtcaactcc
cttcgcctcaaagggcttgatgcacttttaatagttggtgtggacagtacacagaacttg
actgaacttcgggaaatagagtttggcagagggtttggatacagcgaacctctgagtgtt
ggatttgcagatattgaaagcatcttgcagagaaaccttgatattattgcagaaaggaaa
tgctgtaatgttgtttgtaaatgccttggagaaaacggtgatcacggcaaccagggacac
cctggaaccaagggaagtacaggttacagaggatctcctggccatcctggtgaggagggt
gggattggagagagaggtccagtcggtttcaatgggactcaaggagagaggggatgttca
ggtgccagaggtcataaggggtccagaggctatcggggaagccagggtgaatatggtgag
agtggatttgatggcactgatggagaacagggagaacatggatctcctggtccttctggt
gagaaaggcaggccaggaaaacggggtagaaaaggctccacaggagaatcgggtgagcga
ggagagactggtctaagaggagatcgtggggatcctgggattagcaataatgttcccggt
cctatgggtgaaaaagggaacccagcacagcagggggatccaggaccacaaggactccaa
ggagagcagggtgatgctggtgctgatggtgcagaaggtcgaagagggcctccgggcata
aagggtgaacaaggagatctgggggaatcaggttacccaggagatcctggtttgccaggc
ccacagggcccaagaggaccacaaggtatcagaggacctccaggaccacaaggcatgcca
ggctctctggctagtctaggacccccaggtcctcctggctctgttgggaagcaaggtgca
agaggagcaaagggtgagcctggtgaccccggagagaagggtattgtgggaccagctgga
cagagaggcatgcctggcatggatggcagagatgtctatggtcctgaagggagcaaagga
gcaaagggacaatctggattcatcggctatcctggtccagagggagaagagggagaccca
ggtatcccaggagctgaaggacccaaaggagttaggggtagaaggggaaatgctggcaca
ccgggttctgttggagatgtgggggaccaagggccaccaggacctatgggtaccaaggga
ccaaggggcaccattacaatggaaccttgtgaacttgtgaattttacacgagaaaactgc
ccttgctcatcagatacagacacatgtccagtttatccaactgaagtggtgtttgccctt
gatatgtctgaagatgttactccagcagcgtttgaaagaatgaggaacattgtcatgtct
ttgcttaggacaattaagatcagtgcaagcaactgcccaacaggcgctcgtgtctccatt
gtttctttcaataccaacacgcgctatctcatccgattctcagaattccaaaagagcaac
ttgctactgcaagcagtccagagagtaccactagagagatccactggaaaacgtaatatt
ggggcagccatgaggtttgttgcaaggaatgtctttaaacgggttcgtcagggcatcctc
acaagaagagttgccatattttttgccaatggtccatcgcaggatgatactgtcatcagc
acagctgcacttgagttaagtgccttggatatcattccagtggttattgccttcagtgaa
gtgccaaatgtcaggcgtgccttctcaattgatgatactagaagatttcagttatttgtt
tgggaaagacaacaaagtgaaagtttggagagcatcacatattgtactctttgctatgat
aaatgcaaaccaagtaccaactgtgaggtgcccattcctcctcctgttctggtggatatg
gatatcacttacatcatggacagctcttgcagcatcagcagtgaagagtttcagagagcc
aaagactttgtgagcaacatgctagatcagtttgtcattgcctcacagccaagcgagtcg
tatggaggcaccagagtggcactggtgcaacaggctcccagaggcgagctgcctgacaga
agccaaagccccgtggccctggagtttgatctagtcacatacaacaataaagatttgatg
aagaaacatatccaagagtccgttcagcaattggaaggaccatccaccattgcttctgca
ttacagtggacagttgaaaacgtattttttaaagcccccagacagagaaagcacagggtc
atatttacaatagttggaagcaaaacaagcatgtgggacagagagaggctgagagagatt
tcacttggggctaagtgccaaggattcaccttgttcactctagcgcttggcaatgatgtg
agtgagagtgagctgatagagctgtcaagctgccccgtagaccagcacttactgtctttg
ggcagagtttcaacatctgagatggcatatgctcagaggtttagccgggcattcctaaat
ctcctacaacaggaaataaacagttatccttctcctgaacttcaagaagagtgtgaaagc
ttagatcggggagacacgcaacagcaagtatctgcgattgaaagggtgccttttcctggc
tcagatgaagctagttacagtcatgatttggaagaagttgaaacaactgaaaatagagtc
ctggagaaagttataacaactaccacagaacctgtatacacattgccaaaaatgagatat
ggttatgggaagaatgagtatttcacgcaggaagattctaaagaaaaaaagtcacaaaag
tatggagacgctcagaaggagaatgaggaaaacttagaggcaacagtagaaactagagct
gcttataaggattatgatgtgtgtgacctgcttcaggacagcggagaatgtcaagattaa
gttctgaagtggtactacaacaaagggcagaaaacgtgtggtcagctttggtatnggggc
tgtggaggcaacaaaaatagatttgaaacacaagaagagtgtaaagtcttgtgtatagaa
tcttcctag
DBGET
integrated database retrieval system
