Serinus canaria (common canary): 103816677
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Entry
103816677 CDS
T05755
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
scan
Serinus canaria (common canary)
Pathway
scan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103816677 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scan03019
]
103816677 (CNOT1)
Messenger RNA biogenesis [BR:
scan03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103816677 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
103816677 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
103816677
NCBI-ProteinID:
XP_009088936
LinkDB
All DBs
Position
Unknown
AA seq
2376 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPSPHLFAQLSKVIK
LSKVQEVIFGLALLNSFSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGIAKTMMESSLADFMQEVGYGFCASVEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTDGISLQSISAPGSGIWSDGKDKSDGSQAHTWNVEVLIDVLKELNPNLDFKVVTYE
LDHPGFQIRDSKGLQIVVFGIQRGLGMEVFPVNAIYRPWKHAEGQLSFIQHSLINPDIFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDSLAGMASL
SLGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTQNQTTGFSGIGGLSSQLPVGG
LTTGSLTGIGTGALGLPAVNNDPFVQRKLSTSGLNQPTFQQSKMKPSDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFASKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFIQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKAPLAGQVSTIVTTSTTTTVAKTITITRPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITMAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSVRSVVFRPPNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGSLLKDKDRLKNLDEQLSAPK
KDVKQPEELPPITTTTASTTPATSTTCTATVPPQPQYSYHDINVYSLGGLAPHITLNPTI
PLFQAHPQLKQCVRQAIERAVQDLVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRVA
AHHMMRNLTAGMAMITCREPLLMSIATNLKNSFATALRAASPQQRDMMEQAAAQLAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPTNDLTQPTGFLAQPMKQAWATDDVAQIYDKCMTELE
QHLQSIPHTLAMNPQVQALRSLLEAVVVARNSRDAIAALGLLQKAVEGLLDATSGADADL
LLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQ
QYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAHSRG
NAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWV
NLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRALAEQQHN
PAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLLQDHDV
RQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLE
LISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVLL
VLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINI
APRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNIQLINALVL
YVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSH
THYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWNH
EFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7131 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcatattgtgaataggcacggt
ccggaggcagacaggcatttactacgctgtctattctcgcacgtggatttcagtggcgat
ggtaaaagcagtggcaaagattttcatcagactcaatttctgatccaggagtgtgcgtcg
ctgattacaaaaccaaactttatctcgacgctgtcgtacgccattgacaatcccttgcac
tatcagaagagtctaaagccttcaccccatttatttgcccaattgagtaaagtcatcaaa
ttaagtaaagttcaagaggtgatttttggtctggctttactgaactctttcagctcagat
ctgcgaggttttgctgcccagtttatcaaacagaaactcccggatcttttgcgctcttac
attgacgcagacgtcagtggaaatcaagaaggtggcttccaagatattgcaatagaggtc
ctgcaccttctcctctcccatctcctctttgggcagaagggagcctttggggtaggacag
gagcagattgacgctttcctcaaaacattacgtagagattttccccaggagcgttgtcct
gtggtgcttgcaccacttctctaccctgaaaaacgggacattctaatggacaggatcctg
cctgattctggagggatagccaaaaccatgatggagagttcactggcagatttcatgcaa
gaagttggctatggcttttgtgcaagtgttgaagaatgtcgcaacataatcatgcagttt
ggtgttcgggaagtcacggctgcccaggttgccagggttttggggatgatggctcgaact
cattcaggattgacggatggtatttcattacaatctatttcggctcctggcagtgggatt
tggagtgatggcaaagataagagtgacggaagccaagcccatacctggaatgtggaggtc
ttgattgatgttcttaaagagctgaaccctaacctggacttcaaagtagtgacatatgaa
ttggaccatccaggatttcagattcgtgatagcaagggcctgcaaattgtagtttttggc
atccagagagggctgggcatggaagtttttccagttaatgccatatacagaccttggaag
catgcagagggccagctctccttcatccaacattccctcataaaccccgacatcttctgt
tttgctgactacccttgccatactgttgccacagacatcctgaaagcaccaccggaggat
gacaatcgagaaattgctacatggaagagcctggatttgattgagtctctcttacgattg
gcagaagtggggcagtatgagcaggttaagcagctcttcagttttcctatcaagcattgc
ccagatatgctggtattggccttactgcagatcaacacgtcctggcacaccttgcgccat
gaactcatctccacgctcatgccaattttccttggcaaccatcccaactcagccatcatt
ttgcactatgcatggcatggacagggtcagtctccttcaattcgtcagcttatcatgcat
gccatggcagaatggtacatgagaggggagcagtatgatcaggcaaaactgtcacgtatt
cttgatgtggcgcaagacttgaaggccttgtcaatgctgctaaatggtactccatttgcc
tttgttattgaccttgctgcacttgcctctcgacgggaatacctcaaacttgacaaatgg
ctcacagataaaattcgggagcatggggaacctttcatccaggcctgtatgactttctta
aagagaagatgtccatctatcctgggtggccttgctccagaaaaggatcagcccaaaagt
gctcagcttcctccagaaaccctggcgactatgttggcctgtctgcaagcttgtgccggg
agtgtttctcaggagctgtcagagaccatcctcaccatggtagcaaactgcagtaatgtc
atgaacaaggctcggcagcccccacctggagtcatgcccaaaggacgcccacccagcgcc
agcagcttggatgccatctctcctgtgcagatcgactcgcttgcaggaatggcctctctt
agtttaggtggctcagctgctccccacacccagagcatgcaaggcttccctccaaacttg
ggctctgcattcagtactcctcagtcaccagcaaaagcgttcccacctctttccacccaa
aaccagacaaccggtttcagtggcatcggaggactttcctcacagcttccagtaggtggt
cttactacgggtagcctgactggcataggaactggagccctgggccttcctgcagtgaac
aatgacccattcgtgcaaaggaagttgagcacatctggactgaaccagcctacattccag
cagagtaagatgaaaccttctgacttatctcaggtgtggccagaggctaatcagcacttt
agcaaagaaatagatgatgaggcaaacagctacttccagcgtatttacaaccatccacca
cacccaaccatgtctgtggatgaggtcttggaaatgctgcagaggtttaaggactccaac
attaaacgggaacgagaagtgtttaactgtatgctgaggaacttgtttgaggaatatcgt
ttcttcccccagtacccagacaaagagctgcacataacagcctgtctcttcgggggcatc
attgagaaaggactggttacttacatggcattgggcctggccctgcgctatgttcttgaa
gccttacgaaagccttttgcatccaaaatgtactattttggtattgctgcactagataga
tttaaaaatagattgaaggactatccccagtattgtcagcacttggcttctattagtcac
tttatacagttcccacatcatttacaggagtacatagaatatggacagcaatctagagat
cctcctgtgaagatgcagggttcaatcaccacccctggaagtattgcacttgcccaggct
caggcccaggcccaggttccagcaaaagctcctcttgctggccaagtcagcactatagtg
accacctcaaccaccaccactgttgcaaaaaccattacgatcacccgaccaactggagtc
agcttcaagaaagatgtgccgccttccattaatactaccaacattgatacgctgttagta
gcaacagatcaaacagagaggattgtggaacctccagagaatgtccaggaaaaaattgct
ttcatcttcaataatctgtctcagtcaaatatgacgcagaaggtggaagaattgaaggaa
acagtgaaagaagagttcatgccttgggtatcacagtatcttgtgatgaaaagagtcagt
attgaacctaactttcacagcttgtattcaaacttccttgacacacttaagaatccagag
tttaataaaatggttctgaatgaaacctacagaaatatcaaggttctattgacatcagat
aaagctgcagccaacttctcagaccgttctttgttaaagaaccttggtcactggctggga
atgataacgatggctaaaaataagcccatcttgcacacggatttggatgtgaagtcactg
ctgctggaagcatatgttaagggacagcaggaattgctttatgtagtgccatttgttgcc
aaagtcttagaatccagtgtcaggagtgtggtcttcaggcctccaaacccatggacaatg
gccattatgaatgttttagctgagcttcatcaggaacatgatctaaaactgaatctgaaa
tttgagattgaggtgctctgcaagaatcttgcactagacatcaatgagctgaaacctgga
agtctcctgaaagataaggatcgtctgaaaaatctggatgagcagctgtctgctccaaag
aaggatgtgaaacagccagaagagctaccacccatcacaacaaccactgcttctacaact
ccagctaccagcaccacttgtacagccacggttcctccccagccccagtacagttaccat
gatatcaacgtctattctttaggagggttggctccgcacattaccttaaatccaacgatt
cccctgttccaagcacacccgcagctgaagcagtgtgtgcggcaggcgatcgagcgtgcg
gtgcaggacctcgtccatcccgtggtggacagatccatcaagattgccatgaccacctgt
gagcagatagtcaggaaggacttcgccctggattctgaggagtctcggatgcgtgtggct
gctcaccacatgatgaggaacctgactgctggcatggccatgattacctgcagggagcct
ttgctgatgagcatagctaccaacttgaaaaatagctttgctactgcactgagggcagcc
tccccacagcagagagacatgatggagcaggcagctgcccagttagcacaggataactgt
gagcttgcctgctgctttatccagaagacagctgtggaaaaggctggccctgagatggac
aagaggcttgcaactgaatttgagctcagaaagcatgctaggcaagaggggcgtcgctac
tgcgatcctgtcgtgttaacgtaccaggctgagcggatgccagaacagatcaggttaaag
gttggaggtgtggacccaaaacagctggctgtttatgaagaatttgcacgaaatgtccct
ggcttcttgcccaccaatgacttaactcagcctacaggattcttggctcagcctatgaag
caagcttgggctacagatgatgtagcacaaatttatgacaaatgtatgacagaactggag
cagcacctgcaatccattccacacaccctggccatgaatcctcaagttcaagcactgcgt
agcctcttggaggcggtggtagtggctcggaactcccgggatgctattgctgcacttgga
ctactgcagaaggctgtagagggcttgctggatgccaccagtggggctgacgctgacctc
ctgctccgctaccgtgagtgtcacctgctggtgctgaaggctctgcaggatggccgtgcc
tatggatctccatggtgtaacaaacaaatcactaggtgcctgattgaatgcagagacgag
tacaaatacaacgtggaagctgtggagctgctcatccgcaatcaccttgttaacatgcag
cagtatgaccttcacttggctcagtccatggagaatggcttgaactacatggctgtggca
tttgccatgcagttggtaaagatcttgttggtggatgagagaagtgttgcccatgtaaca
gaagcagatctgtttcacaccattgagacactcatgagaattaatgctcattccagagga
aacgccccggaaggattaccccagctgatggaagtggtccgatcaaactatgaagcaatg
attgaccgtgctcatggaggtcctaatttcatgatgcattcaggaatttcccaagcttca
gagtatgatgacccaccaggcctgagagagaaggcagaatacctgctgagggagtgggtg
aacctctaccattcagctgcagcaggccgtgacagtaccaaagcattctctgcgtttgtt
ggacagatgcaccagcaggggatcctgaaaacagatgacctgatcacccgttttttccgt
ctctgcaccgaaatgtgtgttgagatcagctatcgagccctggccgagcagcagcacaac
cctgcagccaaccccaccatgattcgagccaagtgctaccacaacctggatgcctttgtg
cgactcattgcactgctggtgaagcactctggggaggcaaccaacacagtcacaaagatc
aacctcctgaataaggttcttggtattgtggtgggagttcttctgcaagaccatgatgtt
cggcagagtgagtttcagcagcttccttaccatcgcatcttcatcatgttgctgttggaa
ttaaatgctcctgagcatgtgctggagaccatcaacttccagacactcacagctttctgt
aacacatttcacatcctgaggcctacaaaagctccaggttttgtttatgcctggctggaa
ctgatctcccatcggatatttattgcaagaatgctggcacatacaccacagcagaagggt
tggcctatgtatgcccagttattgatcgatctgttcaagtacttggctcctttccttaga
aatgtggaactcaccaaacctatgcaaattctttataagggcactctgcgtgtgttgctg
gtcttgttgcatgatttcccagaatttctttgtgactaccactatgggttctgtgatgtg
atcccacctaactgtattcagctaaggaatctgatcctgagtgccttcccacggaacatg
aggcttccagaccctttcacccccaacctaaaggtggatatgttaagtgagattaatatt
gctccacggatactcacgaatttcactggagtgatgccacctcagttcaagaaagacctg
gattcctatctcaaaactcgttctccagtcacctttttgtctgatttgcgaagcaaccta
caagtatcaaatgaacctggcaaccgctacaacatccagctgattaatgcactggtgctc
tacgtaggtactcaagctattgcacacattcacaacaaaggcagcacaccttccatgagc
accattacccactcagctcacatggacatcttccagaatttggcagtagatctggatact
gaaggccggtacctcttcctgaacgccattgccaaccagctgcgctaccccaacagccac
acccactacttcagctgcaccatgctctacctgtttgcagaggccaacacagaggccatc
caggagcagatcaccagggttctcttggaacgactgattgtaaataggcctcatccctgg
ggtctccttattacgttcattgagctgatcaaaaatccagcctttaagttctggaaccat
gagtttgttcactgtgctccagaaattgagaagttgttccagtcggttgcacagtgctgc
atggggcagaagcaggcccagcaagtaatggaagggactggtgccagttag
DBGET
integrated database retrieval system
