Sporomusa carbonis: SCACP_04180
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Entry
SCACP_04180 CDS
T10996
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
scao Sporomusa carbonis
Pathway
scao03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
scao00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SCACP_04180 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scao03021
]
SCACP_04180 (rpoB)
03400 DNA repair and recombination proteins [BR:
scao03400
]
SCACP_04180 (rpoB)
Enzymes [BR:
scao01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SCACP_04180 (rpoB)
Transcription machinery [BR:
scao03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SCACP_04180 (rpoB)
DNA repair and recombination proteins [BR:
scao03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SCACP_04180 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
DUF5887
Motif
Other DBs
NCBI-ProteinID:
XEQ91610
LinkDB
All DBs
Position
458070..461894
Genome browser
AA seq
1274 aa
AA seq
DB search
MFNPVPVGKRFRYSYAKIDEVLDMPNLIEIQKNSYNWFLKEGLQEIFRDISPIQDFTGNL
VLSFENFTLGEPKYEVEECKERDVTYAAPLRVSVRLYNKETQEIKEQEVFMGDFPLMTDN
GTFIINGAERVIVSQLVRSPGVYYGETIDTTGKRLYNATIIPNRGAWLELETDPNDVISV
RVDRTRKLPVTVLIRALGFVSNGVISELFNDDVRIRATLERDNTDSREEALVEIYKRLRP
GEPPTVENAAQLLESLFFDSKRYDLAAVGRYKLGKKLGWRRRLLGKMLAQPLVDKETGEI
VAEEGTVLDEDALNRIAAAKVFEGEGMHDAWIKQKDGTPVKLIFNSVLPFTHRTITKEDI
IAAVSYLLNLMDGHGTTDDIDHLGNRRLRSVGELLQNQFRIGLARMERVVKERMTIQDID
VITPQALINIRPVVAAIKEFFGSSQLSQFMDQTNPLAELTHKRRLSALGPGGLSRERAGF
EVRDVHHSHYGRMCPIETPEGPNIGLIGSLSTFARINEFGFIETPYRKINKHARRVTDEV
IYLTADEEDEMVIAQANEGLDENGWFKEPRVTCRYKHETLVVPAEKVDYMDVSPKQVVSI
ATAMIPFLENDDANRALMGANMQRQAVPLLKTQAPLVGTGMEYKAARDSGVVVLAKNAGV
VEKVTATEIQIRTENGGLDTYKLLKYLRSNQGTCINQKPIIFKGDRVVKGQVLADGPSTD
KGELALGYNVLVAFMPWEGYNYEDAILLSQELVKEDIFTSIHIEEYECDARDTKLGPEEI
TRDIPNVSEDVLRDLDDRGIIRVGAEVRPGDILVGKVTPKGETELTAEERLLRAIFGEKA
REVRDTSLRVPHGEAGKIVDVKVFTRENGDELPPGVNQLVRCYIAQKRKISEGDKMAGRH
GNKGVVSRIMPQEDMPFLPDGTPVQIVLNPLGVPSRMNIGQVLETHLGRAAAAIGMQVKM
GDPTLVDRLKEVNYNVEKHGLPKPDIAGVHLATPVFDGATETEVIKTLKAAGLSEDGKTI
LYDGRTGEPFDNPVTVGYVYMLKLAHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFG
EMEVWALEAYGAAYTLQELLTVKSDDVVGRVKTYEAIVKGENVPEPGVPESFKVLIKELQ
SIGLDVKVLTEDAQEIMIRESDEDINETAKELELNIGGDDVTQAPVERKKPDFEGDVVDD
LEANDDIEPLEEELDIIAEIGEMEPDKFDIAPRAEEDDFDFQPKRGNAKKLKENAKKSNP
RSYLDEIIDDEDFD
NT seq
3825 nt
NT seq
+upstream
nt +downstream
nt
atgtttaatcctgttccggtgggcaaaaggttcaggtatagttacgccaaaattgacgaa
gtgctggacatgcccaaccttatcgagattcagaagaattcgtacaactggtttcttaag
gaaggtttgcaggagatatttcgcgatatctctcccattcaggactttaccggcaacctg
gttctgtcttttgaaaactttacgctgggcgaacctaaatatgaagttgaagagtgcaag
gagcgggatgttacttatgctgctccacttcgcgtgagtgtccggctgtacaacaaagaa
acgcaggagataaaagagcaggaagtgtttatgggcgattttccgctcatgaccgacaac
ggtacatttattatcaatggcgccgagcgggttattgtcagccaattagtacgttcacca
ggagtctattacggcgagacaatcgacacgaccggcaagaggctgtacaatgccacaatt
atccccaatcgtggggcatggttggaactggagactgatcctaacgatgtgatatcggtt
agagttgaccgtaccagaaagttgccggtaacagtgcttattcgggcgttaggattcgtg
tccaacggcgtaatatccgagctttttaatgatgatgtgcgtatccgggcaacgttggaa
cgggacaacactgactcgcgggaagaagcgcttgtcgagatttacaaacgcttgcgtccg
ggtgaaccgccgacagtagaaaatgctgcacagctattggaatcgctgttttttgactct
aagcgttatgatttggctgcagtcgggcgttataagcttggaaaaaagctgggatggcgt
cgacgtctcttaggaaaaatgctggctcagccgcttgttgataaagagaccggtgaaatt
gttgccgaagaaggtacagtgctggacgaggatgcacttaaccgcattgccgccgccaag
gtattcgagggtgaaggcatgcatgatgcctggatcaaacaaaaagacggtactcctgtg
aaattgatattcaactcagtattgcctttcacacaccgcaccattaccaaagaggacatt
attgctgccgttagctacctccttaacttgatggacggtcacggtactactgatgatatt
gaccatttaggcaaccgccggttacgctcggtaggcgaactgctgcaaaaccagttccgt
atcggcttggcccggatggagcgggttgttaaagagcgtatgaccatccaggatattgat
gtaatcacgccgcaagcgctgattaatatcaggccggtggtagctgccataaaggaattt
tttggttcgagccagctctcacagttcatggaccagaccaatccgctggctgaacttact
cataaacggcgtctcagcgccttggggcctggtggtttgagccgtgaacgcgccggcttt
gaagtccgcgacgttcaccattcccactacggccgcatgtgtccgattgaaacgcctgaa
ggaccgaacattggtcttatcggttcgctgtctacctttgcccgcatcaatgaatttggt
tttattgaaacgccttatcgaaaaattaataaacatgcgcgacgggtaaccgatgaagta
atctatcttaccgctgatgaagaagacgaaatggtaatagcccaggctaatgagggactg
gacgaaaatggctggtttaaagagccgcgcgttacctgccgttacaagcatgaaaccttg
gtagttccggctgagaaagttgactacatggatgtttcaccaaagcaagttgtgtcaatt
gcaaccgcaatgatcccattcctggaaaacgatgacgccaaccgggctttgatgggtgct
aacatgcagcgtcaagccgttccgctcctgaaaactcaggcaccgcttgtcggtaccggt
atggaatataaagctgcccgtgactcaggggtagtagtgttggctaagaatgccggcgtt
gtggaaaaagtaacggcaaccgaaattcagatacgcaccgaaaatggcggattggatacc
tataaactgctgaaatatctgcgctcgaaccaaggaacatgtattaatcaaaaaccgatc
atttttaaaggcgaccgtgttgtcaaaggccaggtgctggctgacggaccgtccaccgat
aaaggcgagttggctctgggatataatgtgctggtggcatttatgccatgggaaggctac
aattacgaggacgccattcttttgagtcaagagttggttaaggaagatatctttacttca
atccatattgaagagtatgaatgcgacgcccgcgatactaagctgggcccggaagagatt
acccgtgatattccgaatgtatccgaggacgtgctcagagaccttgatgaccggggaatt
attcgcgttggggctgaagttcgcccgggagatattctggtcggcaaagtaacccctaaa
ggcgaaaccgaactgaccgctgaagaacgtctgctgagggccatttttggtgaaaaagct
cgcgaagtccgcgacacgtctcttagagtaccgcacggtgaagcgggcaaaattgtcgat
gttaaagtatttacccgtgaaaatggcgacgaattgccgcctggcgttaaccaactggta
cggtgctatatcgcgcaaaagcgtaaaatctctgaaggcgataaaatggctggccgccat
ggtaacaaaggggtagtttcccggattatgccgcaggaagatatgccctttttgcctgac
ggcacaccggtgcagattgttttaaaccctcttggcgtaccttcacgtatgaatattggt
caggtgttggagactcatttgggtcgtgccgcagctgccattggcatgcaggtgaaaatg
ggcgatccgacattggttgaccgtcttaaagaagtaaattacaatgttgaaaagcacggg
ctgcctaaaccggatatcgccggggttcacttggcaaccccggtatttgacggcgcgaca
gagaccgaggtcattaaaacacttaaggctgccggcttgtcagaggatggaaagaccatc
ctttatgacggtcgcacaggtgaaccatttgataaccctgtaaccgttggctatgtatat
atgctgaaattggctcacttggttgacgacaagattcatgcccgttctaccggcccgtac
tcgcttgtcactcagcaaccattaggcggtaaagcccagttcggtggtcagcgtttcggt
gagatggaagtttgggcgctcgaagcttacggcgcagcatacacactgcaagaactgtta
actgtcaagtctgatgatgttgtcggtcgggtaaaaacgtatgaggccattgtcaaaggt
gaaaacgttcctgaaccgggcgtaccggaatccttcaaggtgcttattaaagaactccag
agtattggccttgatgtcaaggtattgactgaagacgcgcaggaaatcatgattcgcgag
tcagatgaagacattaatgaaacagcgaaagaactcgaattaaatattggcggagacgat
gtaacacaagcccctgttgaacgcaaaaagccggattttgagggtgatgtagttgacgat
ctcgaagctaatgacgatatcgaaccgttggaagaagaactggatattattgctgaaatc
ggtgaaatggaacctgacaagtttgatattgcccccagagcggaggaagatgattttgac
ttccagcccaaacgaggcaatgcgaaaaagctcaaggaaaatgctaaaaagtctaatcct
cgctcatatcttgacgagataattgatgatgaggactttgactag
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integrated database retrieval system
