Staphylococcus caprae: DWB96_11850
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Entry
DWB96_11850 CDS
T06252
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
scar
Staphylococcus caprae
Pathway
scar03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
scar00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DWB96_11850 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scar03021
]
DWB96_11850 (rpoB)
03400 DNA repair and recombination proteins [BR:
scar03400
]
DWB96_11850 (rpoB)
Enzymes [BR:
scar01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DWB96_11850 (rpoB)
Transcription machinery [BR:
scar03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DWB96_11850 (rpoB)
DNA repair and recombination proteins [BR:
scar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DWB96_11850 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
DUF7033
ATP-grasp_6
Motif
Other DBs
NCBI-ProteinID:
QDW94895
LinkDB
All DBs
Position
complement(2439246..2442797)
Genome browser
AA seq
1183 aa
AA seq
DB search
MAGQVVQYGRHRKRRNYARISEVLELPNLIEIQTKSYDWFLKEGLLEMFRDISPIEDFTG
NLSLEFVDYRLGDPKYDLEESKNRDATYAAPLRVKVRLIIKETGEVKEQEVFMGDFPLMT
DTGTFVINGAERVIVSQLVRSPSVYFNEKIDKNGRENYDATIIPNRGAWLEYETDAKDVV
YVRIDRTRKLPLTVLLRALGFSTDQEIVDLLGESEYLRNTLEKDGTENTEQALLEIYERL
RPGEPPTVENAKSLLYSRFFDPKRYDLASVGRYKANKKLHLKHRLFNQKLAEPIVNSETG
EIVAEEGTVLDRRKIDEIMDVLETNANSEVFELEGSVIDEPVEIQSIKVYVPNDEEGRTT
TVIGNALPDSEVKCITPADIIASMSYFFNLLNGIGYTDDIDHLGNRRLRSVGELLQNQFR
IGLSRMERVVRERMSIQDTDSITPQQLINIRPVIASIKEFFGSSQLSQFMDQANPLAELT
HKRRLSALGPGGLTRERAQMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYARVNEFG
FIETPYRKVDLDTNSITDQIDYLTADEEDSYVVAQANSRLDENGRFLDDEVVCRFRGNNT
VMAKEKMDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPEAPFVGTG
MEHVAARDSGAAITAKHRGRVEHVESNEVLVRRLVEENGTEHEGELDRYPLAKFKRSNSG
TCYNQRPIVSVGDVVEYNEILADGPSMELGEMALGRNVVVGFMTWDGYNYEDAVIMSERL
VKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVSESALKNLDDRGIVYVGAEVKDGDI
LVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIVLDVKVFNREEGDDT
LSPGVNQLVRVYIVQKRKIHVGDKMCGRHGNKGVISKIVPEEDMPYLPDGRPIDIMLNPL
GVPSRMNIGQVLELHLGMAAKNLGIHVASPVFDGANDDDVWSTIEEAGMARDGKTVLYDG
RTGEPFDNRISVGVMYMLKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEV
WALEAYGAAYTLQEILTYKSDDTVGRVKTYESIVKGENISRPSVPESFRVLMKELQSLGL
DVKVMDEQDNEIEMADVDDEDATERKVDLQQKNAPESQKETTD
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
ttggcaggtcaagttgtccaatatggaagacatcgtaaacgtagaaattacgcgagaatt
tcagaagtattagaattaccaaacttaatagaaattcaaactaaatcttacgattggttc
cttaaagaaggtttattagaaatgtttagagacatttctccaattgaagatttcacaggt
aacctatctttagaatttgtagattatagattaggtgatccgaaatacgatttagaagaa
tctaaaaaccgtgacgctacttatgctgcacctcttcgtgtgaaagtacgtctcattatt
aaagaaacaggcgaagtgaaggaacaagaagtcttcatgggtgatttcccattaatgact
gacacaggtacattcgttatcaatggtgctgaacgtgttatcgtttctcaattagtacgt
tcaccatccgtttatttcaacgagaaaattgataaaaatggacgcgaaaactacgatgca
actatcattcctaaccgtggtgcttggttagaatatgaaacagatgcgaaagatgtagta
tacgttcgtatcgatagaactcgtaaattaccattgacagtattattacgtgcactaggt
ttctcaactgatcaagaaattgttgatttactaggtgagagtgaatatttacgtaataca
ttagaaaaagatggtactgaaaatactgaacaagctttattagaaatttatgaacgttta
cgtcctggcgaaccaccaacagttgaaaatgctaaaagcttattatactcacgcttcttc
gaccctaaacgttatgatttagcaagtgttggtcgttacaaagctaacaaaaagttacat
ttaaaacaccgtttatttaatcaaaaattagcagaacctattgttaatagtgaaacaggt
gagattgtagctgaagaaggtactgtattagatcgtcgtaaaattgacgaaatcatggac
gttttagaaacaaacgctaacagtgaagttttcgaattagaaggtagcgttattgacgaa
cctgttgaaattcaatcaattaaagtctatgtacctaatgatgaagaaggtcgcacaact
actgtaattggtaatgcattaccagattcagaagttaaatgtattactccagctgatatc
attgcgtcaatgagttatttcttcaacttattaaatggtattggttatacagatgatatc
gaccacttaggtaaccgtcgtttacgttcagttggtgaacttttacagaaccaattccgt
atcggtttatcaagaatggaacgtgttgttcgtgaaagaatgtctattcaagacactgat
tcaatcacaccacaacaattaatcaacattcgaccggttattgcgtctattaaagaattc
ttcggaagttcacaattatcgcaattcatggaccaagctaacccattagctgagttgact
cataaacgtcgtctatcagcactaggacctggtggtttaacacgtgaacgtgctcaaatg
gaagtgcgtgacgttcactattctcactatggccgtatgtgtccaatcgaaacacctgag
ggtccaaacattggtttaatcaactcattatcaagttatgcacgagtaaatgaatttggt
tttattgaaacaccttatcgtaaagtagatttagatacgaactctatcactgaccaaatt
gattacttaactgctgatgaagaagatagttacgttgttgcccaagcgaactctcgttta
gacgaaaatggtcgtttcttagatgacgaagttgtttgtcgtttccgtggtaataacaca
gttatggctaaagagaaaatggactacatggatgtatctcctaaacaagtagtatctgca
gcgacagcttgtattccattcttagaaaatgatgactctaaccgtgcattaatgggtgcg
aacatgcaacgtcaagcagtaccattgatgaatccagaagcgccatttgttggtacaggt
atggaacatgtagccgcacgtgattcaggtgcagcgattactgctaaacatagaggacgc
gttgaacacgttgaatctaacgaagtattagtacgtcgcttagtagaagaaaacggcact
gaacatgaaggtgaattagatcgttacccattagctaaattcaaacgttcaaactctggt
acatgttataaccaacgtccaattgtttctgttggtgatgtagtagaatacaatgaaatt
ttagctgacggtccttcaatggaattaggtgaaatggcattaggacgtaacgttgtagtt
ggtttcatgacttgggacggttataactacgaggatgctgttatcatgagtgaacgttta
gttaaagatgacgtttatacttctattcacattgaagaatatgaatctgaagctcgtgat
actaagttaggacctgaagaaattactcgtgacattcctaacgtatctgaaagtgcactt
aaaaacttagacgatcgcggtatcgtttatgttggtgctgaagttaaagacggtgacatc
ttagtaggtaaagtaacgcctaaaggtgtaactgaattaacagctgaagaaagattatta
catgctatcttcggtgaaaaggctcgtgaagtccgcgatacatcattacgtgtaccacat
ggtgcaggcggtatcgttctagatgttaaagtattcaatcgtgaagaaggcgatgatacg
ttatctccaggtgtaaaccaattggtacgtgtttatatcgttcaaaaacgtaaaattcat
gtaggggacaaaatgtgtggtcgtcacggtaacaaaggtgttatctctaaaattgttcct
gaagaagatatgccatacttaccagatggtcgtccaatcgacatcatgttaaacccactt
ggtgtaccatcacgtatgaacatcggacaagtacttgagttgcatttaggtatggctgct
aagaacttaggcatccatgtagcatctccagtattcgatggtgcaaacgatgatgatgta
tggtcaacaattgaagaagcaggtatggctcgtgatggtaaaactgtattatacgatgga
cgtacaggtgaaccattcgataaccgtatttctgtaggtgtcatgtacatgcttaaactt
gctcacatggttgacgataaattacacgcacgttcaactggaccatactcacttgttaca
caacaaccacttggtggtaaagcacaattcggtggtcaacgtttcggtgagatggaggta
tgggcacttgaagcatatggtgctgcatacacattacaagaaatcttaacttataaatct
gacgatacagtaggtcgtgttaaaacttacgaatctatcgttaaaggtgaaaatatctct
agaccaagtgttccagaatcattcagagtattgatgaaagaattacaaagtttaggatta
gatgttaaagtgatggacgagcaagacaacgaaattgaaatggcggacgttgatgatgaa
gatgcaactgaacgcaaagtagatttacaacaaaaaaatgctcccgaatcacaaaaagaa
acaactgattaa
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