Scyliorhinus canicula (smaller spotted catshark): 119952471
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Entry
119952471 CDS
T11175
Symbol
taf1
Name
(RefSeq) transcription initiation factor TFIID subunit 1 isoform X1
KO
K03125
transcription initiation factor TFIID subunit 1 [EC:
2.3.1.48
2.7.11.1
]
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
119952471 (taf1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
scau01001
]
119952471 (taf1)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scau03021
]
119952471 (taf1)
03036 Chromosome and associated proteins [BR:
scau03036
]
119952471 (taf1)
Enzymes [BR:
scau01000
]
2. Transferases
2.3 Acyltransferases
2.3.1 Transferring groups other than aminoacyl groups
2.3.1.48 histone acetyltransferase
119952471 (taf1)
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
119952471 (taf1)
Protein kinases [BR:
scau01001
]
Serine/threonine kinases: Other
TAF1 family
119952471 (taf1)
Transcription machinery [BR:
scau03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
119952471 (taf1)
Chromosome and associated proteins [BR:
scau03036
]
Eukaryotic type
Histone modification proteins
HATs (histone acetyltransferases)
119952471 (taf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3591
Bromodomain
TBP-binding
zf-CCHC_6
Cac1_C
Motif
Other DBs
NCBI-GeneID:
119952471
NCBI-ProteinID:
XP_038632190
LinkDB
All DBs
Position
17:complement(50269663..50460821)
Genome browser
AA seq
2017 aa
AA seq
DB search
MSDSDSDEDHEQPFSLTGFLFGNINEDGQLEDDSVLDKESKKHLDGLGTLGLGTLIKEIT
ANEDDAVESDERNSNAEGWIQSKDDAIDYSDINEVAEDETRRYRQVMGNLQPVRKLEDDD
DDYDADSEDVDSKLMPPPPPPPPLNKEEAASQELIANGVNSAALNSSATVGTRAADALFP
RSVADENDGIILPSIIAPSSSSEKVEFSSSSDSESETDRHIPRSRQNESQKEDKLTLPLA
GIMQRDSTKQLPNVTELFPEFRPGQVLRFLRLFGPGKNIPSVWRSARRKRKKKHREPQPE
APIQEGEGEETAKEQKSGWEYHYAAPPPPEQCLSDDEITMMAPVESKFSQSTGDADNIMD
MRPKVAEWRYGPAQLWYDMLGVPEDGEGFDYGFKLKEAMEEEQMLEEEVTCLVEVQEPCE
EIEKSTDEKELQSEMEALLDEHFLMVTQLPWEEDIIWNGEDVKHKTTKSQRASLAGWLPS
SMTRNATAYNAQQGLNRGTSWLSNPVPPTPIQKATMPCPPILVKGKDKHTPEQHASQEDD
KTWYSIFPIDNEELVYGRWEDNIIWDDQAMDKILEPPVLTLDPNDENIILEIPDEKEEMT
SNSPSKENKKESSARKSRILLGKTGVIKDEPQQNMSQPEVKDPWNLSNDEFYYPKQQGLR
GTFGGNIIQHSIPAVELRQPFFPTHMGPMKLRQSHRPTLKKYSFGALSQPGPHSVYPLLK
HIKKKAKMREQERQASGGGEMFFMRTPQDLTGKDGDLILAEYSEEYPPLMMQVGMATKIK
NYYKRKPGKDPGAPDCKYGETVYCHTSPFLGSLHPGQLLQAFENNLFRCPIYLHKMPETD
FLVIRTRQGYHVRELVDIFVVGQQCPLYEVPGPNSKRANTHVRDFLQVFIYRLFWKSKDR
PRRIRMEDIKKAFPSHSESSIRKRLKLCADFKRTGMDSNWWVLKPDFRLPTEEEIRAMVS
PEQCCAYYSMLAAEQRLKDAGYGEKSFFAPEEENEEEFQMKIDDEVRTAPWNTTRAFIAA
MKGKCLLEVTGVADPTGCGEGFSYVKVPNKPQQQKDDNQPQPVKKTVTGTDADLRRLSLK
NAKQLLRKFGVPEEEIKKLSRWEVIDVVRTMSTEQARSGDTPMSKFARGSRFSVAEHQER
YKEECQRIFDLQNKVLSSTEVLSTDTDSSSAEDSDFEEMGKNIENMLQNKKTSSQLSRER
EEQERKELQRMLMGEEIGNDKDRDKKEKKDRKGSSCSTPTPGIFHKDDDTASVTSLNSSA
TGRRLKIYRTFRDEDGKEYVRCETVRKAAVIDAYVRIRTTKDEDFIRKFALFDEQHREEM
RRERRRIQEQLRRLKRNQEKEKLKGPPEKKPKKVKERPDLKLKCGACGAIGHMRTNKFCP
LYYQTNAPPSNPVAMTEEQEEELEKTVIPNDNEELIKVEGTKIVLGKQLIESADEVRRKS
LVLKFPKQQLPPKRRRRVGTTVHCDYLNRPHKSIHRRRTDPMVTLSSILEGIINDMRDLV
NTYPFHTPVNAKVVKDYYKIIMKPMDLQTLRENVRKRMCHSREEFREQVELIVKNCATYN
GTKHPLTQIAQSMVELCDMKFKEKEDKLVRLEKAINPLLDDDDQVAFSFILDNIVTQKMM
AVPDSWPFHHPVNKKFVPDYYKVITNPMDLETVRKNISKHKYHNREVFLQDVELILSNSI
KYNGTDSLYTKTGQEIVNVCHQTLAEYDEHLTQLEKDIASAKEAALDAAEFDSLDPLTPG
PHTPQPPEFEDGNMSLIMSQELSLFHEEGSMSASATPTTTPEKMHHRLMQGHCREGRIRT
GEEESDVDVEGFEEDDDGKPKTPAPASDFYLALHEATEGECEMEDEDEINIPQRQASILY
EDLLMSDGEDEEHSEEEEGDNPFSSIQLSESGSDSDVETTAIRPKKPHLTPENTRMGMEN
EESMMSYEGDGGETSQIMEDSNVSYESYEETGLKSNTRDTTFSSGGCDYELSEEEEDEEQ
RLGPSVLNEVQLSEDEEDSEEFHSIEGDSDIDSDIET
NT seq
6054 nt
NT seq
+upstream
nt +downstream
nt
atgtcagactcggacagtgatgaggatcacgaacagccattctctctcactggctttctc
tttggaaatatcaatgaggatggacaattggaggatgacagtgttcttgacaaggagtca
aaaaaacacctggatggcttggggacactaggtcttgggaccctcatcaaagaaatcaca
gccaatgaggatgatgcagtggaatctgatgaaaggaacagcaatgcagagggttggatt
cagagtaaagatgatgccattgattactcagatatcaatgaggtagcagaagatgagact
cgcaggtatcgtcaggtgatgggaaatcttcaaccagtgaggaaactagaagatgatgat
gatgactatgatgcagacagtgaagatgtggactcaaagctcatgcctcccccaccacca
cctccaccactaaataaggaagaggcagcttcacaggaattaattgcaaatggagtaaat
tcagcagcgcttaattccagcgctactgtaggaacccgtgctgctgatgcccttttccct
cgttcagtcgctgatgagaatgatggaatcattttaccttccataattgctccttcatcc
tcatcagagaaggttgaatttagcagttcctctgattcagagtctgaaacagaccgacac
attccacgatcaaggcagaatgaatctcagaaggaggataaacttacattgccgctggca
ggtatcatgcagcgagattcaaccaagcaattacccaatgttacagaacttttcccagaa
tttcggccagggcaggtgttacgttttttgcgcctctttggacccggaaaaaatatccca
tcggtttggcgaagtgcaagaaggaaaagaaaaaagaagcaccgggaaccacaacctgaa
gctcccatacaagaaggagagggagaagaaacagcaaaggaacaaaagtctggctgggag
tatcattatgctgcacccccaccacctgaacagtgcctttctgatgatgagataacgatg
atggctcctgtggagtccaagttctctcaatccactggtgatgcagataatataatggat
atgagaccaaaagttgcagaatggcgctatggacctgcacagctttggtacgatatgtta
ggggtgccagaggatggtgaggggtttgattatggtttcaaactcaaggaagcaatggaa
gaagaacagatgctggaggaagaagtgacctgtctggtagaggtacaggagccttgtgag
gagatagaaaaatcaactgatgagaaggagttgcagagtgaaatggaggctcttctagat
gagcactttctcatggttactcagctgccctgggaagaggacattatttggaatggagag
gatgtcaaacataagaccacaaaatcccagcgagccagcctagctgggtggttgccatcc
agcatgacccgaaacgccacagcatacaatgctcaacaagggctcaaccgtggtacttct
tggttgtcgaatcctgtgcctcccacaccaatacagaaagctacaatgccatgtcctcca
atcctcgtcaaagggaaggacaaacatacaccagaacagcatgcctcccaagaagatgac
aaaacttggtattccattttccctattgataatgaagagctggtgtatggaaggtgggag
gataatataatttgggatgaccaagccatggacaaaattttggaaccacctgtgttgacc
ttggacccgaatgatgaaaacataattcttgaaattcctgatgagaaagaggagatgaca
tctaactcgccttccaaagagaacaaaaaagaatcatcagctcgtaagagtcgcatcctg
ttgggaaaaaccggtgtcatcaaggatgagccacagcagaacatgtcacaaccggaggtc
aaggatccctggaacctttccaatgatgagttctactaccccaaacagcaaggactacga
gggacgtttggaggcaacattatccagcactctattcctgccgtggaacttcggcagcca
ttttttccaactcatatgggcccaatgaaactcagacaatcccaccggccaacactgaag
aaatattcttttggagccttgtcacaaccaggacctcattctgtgtacccactgctcaaa
catatcaagaaaaaagccaagatgcgtgaacaagagcgtcaagcctctggtggtggagaa
atgttcttcatgcgaactcctcaggatctgacaggtaaagatggtgacctcattcttgct
gagtacagtgaagaatatccaccacttatgatgcaagttggcatggcaaccaaaatcaaa
aactattacaagcggaaaccaggcaaggatccaggtgcaccggactgtaaatatggtgag
acagtttattgtcacacatctccattccttggatccttacacccaggccaattattgcag
gcatttgaaaacaatctctttcgctgtccgatatacctgcacaagatgccagaaacggat
tttctggttatccgaactcgccagggataccatgttagagaattggttgatatttttgtt
gtaggccaacaatgcccactctacgaagtgcctggtccaaactcaaagcgtgcaaacaca
catgtacgagacttccttcaggtgtttatttatcgccttttctggaaaagtaaagatcgc
ccacgtcgaatccgcatggaggacataaagaaggcatttccttcccactctgagagcagc
atcaggaaacgattaaaactgtgtgcagatttcaaacgaacaggaatggattcaaactgg
tgggtgctgaaaccagacttccgattacccacagaggaagagattcgagccatggtttct
ccagagcagtgctgtgcatattacagtatgttagcagcagagcaacgtttaaaggatgct
gggtatggtgaaaaatcattctttgcacctgaggaggagaatgaagaagaatttcagatg
aagattgatgatgaggtcagaacagcaccctggaataccacgcgagcgtttatagctgca
atgaagggtaaatgtctactagaagttactggagttgctgatcctactggctgtggtgaa
gggttttcctatgtcaaggttcccaacaagccacagcagcaaaaggatgacaaccagcct
caacctgtgaagaagacagtaacaggaacagatgctgacctgcggcgcctatctctgaaa
aatgccaaacaactccttcggaagtttggagtaccggaggaagagattaagaagctttct
cgatgggaagtgattgatgttgtgcgaacaatgtcgacagagcaggccagatctggagat
actcccatgagcaaatttgcccgtggttcacgtttttcagttgctgaacatcaggagaga
tataaggaagagtgtcagcgaatctttgaccttcagaataaggtgctatcatcaacagaa
gttctctcgacagacacagacagcagctcagcagaagacagtgattttgaggaaatggga
aaaaatattgaaaacatgttacagaataagaaaacaagctcgcagctttcacgcgagcgt
gaggagcaggagcggaaagaacttcagaggatgttgatgggagaggaaattgggaatgat
aaggatcgcgacaaaaaggagaagaaggacaggaaaggttcatcttgcagcactcctacg
cctggaatatttcacaaagatgatgacacagcctctgttaccagccttaactcctcagca
acaggacgacgacttaaaatttatcgcacgttccgagatgaagatggaaaggagtatgtg
agatgtgagactgtccggaaagctgcagtaatcgatgcatatgttagaatacgaacaaca
aaagatgaagacttcattcgcaaatttgctctatttgatgagcaacatcgtgaggaaatg
cgacgagaacgacgaagaattcaggagcaacttcggcgactcaaacggaatcaggaaaag
gagaaattgaaaggaccaccagagaaaaaacccaaaaaggtcaaagaaaggccagacctg
aagctaaaatgtggtgcttgtggtgccattggccacatgagaaccaataagttttgtcct
ctgtattaccaaacaaatgctccaccaagtaacccagttgcgatgacagaggaacaggaa
gaggaacttgaaaagactgttatacccaatgacaacgaagaacttatcaaagtggaagga
accaaaattgtgttgggcaaacagctgattgagagtgcagatgaagtgcgcaggaaatcc
ttggtcctcaaattccccaaacagcagcttcctccgaaacgccgtagacgagtgggaaca
acggtgcattgtgattacctaaatagacctcacaagtctattcataggcgacggacagac
ccgatggtcaccctatcatccattttggaaggaatcatcaatgacatgcgagacctagta
aatacttatccattccacactccagttaacgcaaaggttgtgaaggattattataaaatt
atcatgaaaccaatggacttgcagaccttgagagagaatgtgcgcaaacggatgtgccat
tcacgtgaagaattccgagagcaagtggaacttattgtaaaaaactgtgccacgtacaat
ggtacgaagcatcctctgacccaaattgcccaaagtatggtggaactctgtgacatgaag
ttcaaagagaaagaagataaactggtccgcctggagaaagccattaatcctctcctggac
gatgacgatcaagttgccttctccttcatactggataatatcgttactcaaaagatgatg
gctgtgccagattcctggcccttccatcatcctgttaacaagaagtttgttcctgattat
tacaaagtgatcacaaatcccatggaccttgaaacagtgcgaaagaatatttccaagcac
aagtaccataatcgtgaggtattcctgcaggatgtggaacttattctctccaacagtatc
aagtataatggtacagatagtctgtacacaaaaactggtcaggagatcgtgaatgtctgt
caccaaactctggctgagtatgatgagcatttgactcaactggaaaaagatattgcatct
gccaaggaggctgctcttgatgctgcagagtttgacagtcttgatcccctgactccaggg
cctcatactcctcagccaccagaattcgaagatggaaatatgtcacttattatgtctcag
gaactttctttgtttcatgaggaaggcagtatgtctgccagtgccaccccaacaacaaca
ccagagaaaatgcaccacaggttgatgcagggccattgccgtgaggggcgtatcaggaca
ggtgaggaggaatctgatgtggatgtggagggttttgaggaagatgatgatggtaaaccg
aagacacctgccccagcaagtgacttttaccttgctctgcatgaagcaactgagggagag
tgtgaaatggaagatgaggatgagataaatataccgcagcgtcaggcgagcatcttgtat
gaagacttgctaatgtcagatggggaggatgaggaacacagtgaagaggaagaaggggat
aatccattttcgtctattcagctcagtgagagtggcagtgactctgatgttgaaacaact
gccatccgaccaaaaaaacctcatctgacacctgagaatacacgcatgggaatggagaat
gaggagagcatgatgtcctatgagggagatggtggtgagacctctcagatcatggaggac
agtaatgtaagctatgagagctatgaagaaactgggctcaaatcaaatacacgtgataca
accttcagcagtggaggatgtgactatgagctgtcagaggaagaagaagatgaggagcag
aggcttggaccaagtgttcttaatgaggttcaactgagtgaagatgaggaagacagcgag
gaattccactccattgaaggggacagtgatatagactcagatatagaaacgtga
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integrated database retrieval system
