Scyliorhinus canicula (smaller spotted catshark): 119954742
Help
Entry
119954742 CDS
T11175
Symbol
cntn1b
Name
(RefSeq) contactin 1b isoform X1
KO
K06759
contactin 1
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau04514
Cell adhesion molecule (CAM) interaction
scau04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
119954742 (cntn1b)
04517 IgSF CAM signaling
119954742 (cntn1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
scau04515
]
119954742 (cntn1b)
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
scau00537
]
119954742 (cntn1b)
Cell adhesion molecules [BR:
scau04515
]
Immunoglobulin superfamily
Contactins
119954742 (cntn1b)
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
scau00537
]
Others
119954742 (cntn1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
Ig_2
ig
fn3
V-set
FN3_DSCAM-DSCAML_C
Ig_4
Pur_ac_phosph_N
Sp38
C2-set_2
Ig_C17orf99
Interfer-bind
Fn3_VIN3
Fn3_R-PTP-O
Motif
Other DBs
NCBI-GeneID:
119954742
NCBI-ProteinID:
XP_038636193
LinkDB
All DBs
Position
20:complement(72112715..73015913)
Genome browser
AA seq
1035 aa
AA seq
DB search
MWSLLSHFFALSFICCLAEDSRQHGPVFEEQPLPTIYPEESEEAKVSLNCRARANPPPVY
RWKLNNREINVDDSRYSMIGGNLVIDSPEKPKDRGKYQCLATNKYGTIISKEAKLQFGYL
ERFPTEERQTVEVRLGVGAMLLCAAPPHFPDDLTYRWLLNEFPKFISSDKRRFVSQTTGN
LYIAKVEEADMGNYSCIVTSPSISKSVFSKYIPLIPQTDGVVKRYPADIRVKFTDTQVLM
GQNLTLECFALGNPIPQIQWWKVEGSLPSNSELLNMNSVLRLTNIQPEDEGVYVCEARNS
KARDRVEGRLTVHAHPYWIEATNDTMQDIGSDLIWRCEAGGKPQPTYRWFRNGEIVSGAR
FRMSRGELRISRLILQDSGMYQCVTENKHGSLYSNAELKVLASEPDFRLNPVRKKLLGAR
GGKVLIECRPKAAPKPTFVWSKGTELIKNNSRMSIGFNGTLEIRDLSKADEGNYTCFAEN
NRGKANSTGTLSVKEPTKITLEPSNIDITMGENGTMECHAFRDPTLDLTFIWSTNGYPID
FEKEKDYMDRNVLTGDGGELFFKNAQLRHTGKYTCTAQTIVDSTSASADLIVRGPPGPPG
GVRVENTGDTFVTLSWSRGTDNHSPISKYTIRQKIFDLDEWKEAKTDPQDIEGNMETAKV
VDLIPWMDYEFSVMATNTLGIGEPSLPSAKIRTDEAAPTVAPSDVGGGGGNHRELTVTWT
PLPREYHYGSSFGYIVAFKPSTDKEWRKVTVPNPEGNRYVHKDDSLSPSTPFEVKVKAFN
SKGNGPFSLSAFIYSAEDEPSEAPLFVTAGSISSMEIEVTWLPVSQPSLEGYEIRYRRDI
DTEAAAQRVRTIGTNTTARIRDLKPHTRYIVEVRAYNKAGPGPPSKQVGITTRKAPPSMS
PKITDTSMIGTYFRISWESVKPLDNESNVEGYKVLYRRDGTVNSTLLQTVGNNINIPIHD
EGDYIVEVRAYGEGGDGAVNSIKISKRSLPSDSPTIAPSILCLPFSLSDSGVTLPISYML
LSFGLILGAISCLEL
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atgtggtccctgttgagtcatttttttgcattgtcattcatttgctgcttggcagaagac
agtaggcagcatggaccagtgtttgaagaacaaccactacctaccatctacccagaagag
tctgaggaggctaaagtgtcactaaactgccgagcccgggcaaatcctcctcctgtctac
aggtggaaactaaacaaccgggaaattaatgtggatgatagccgctacagtatgatcggc
ggtaacctagttattgacagcccagaaaaacccaaggatcgtggcaagtaccagtgcctg
gcaacaaacaagtacggaaccatcatcagcaaagaggccaagctgcaatttggatatctc
gagaggtttcccactgaggaacgccaaactgtggaagtgagattaggagttggtgcgatg
cttctctgtgccgcacccccacatttcccagatgatctcacctatcgctggctgctgaac
gagttccccaaattcatctcgtccgacaagcgtcgttttgtttcccaaaccactgggaac
ctgtacattgcgaaagtggaagaggccgacatgggcaactattcctgcatcgttacaagt
ccgtccatttccaaaagtgttttcagcaagtacatccctctcatccctcagactgatggt
gtggtgaaaaggtaccctgctgacatcagagtgaagttcaccgacacccaggtcctgatg
ggtcagaatctaactcttgaatgctttgcacttggaaacccaattcctcaaatccagtgg
tggaaggtggagggaagtttgccaagcaactccgagctgctcaacatgaactcggtcctc
agactgacaaacatccaacccgaggacgaaggcgtttatgtgtgtgaagcaaggaattcc
aaagcaagggaccgtgtcgaggggcggctcaccgtacacgctcatccttactggattgag
gctaccaacgacactatgcaggacattgggagtgacctcatctggcgctgtgaagcagga
ggcaaaccccagcccacgtacagatggttccggaatggggaaatagtatccggggcccga
ttccgaatgagccgaggggagctgcgaatttcccgactgatcctgcaagattccggaatg
taccagtgtgtgacggagaacaagcatggctccttatattctaatgctgagttgaaagtt
ttggcttctgaaccagactttcggctgaacccagtaaggaagaagctgttgggagccagg
ggaggcaaagtgctaattgagtgcagacccaaagctgctcccaagccaaccttcgtgtgg
agtaaaggaactgagctgatcaagaataattcaaggatgtccattgggttcaatggcact
ctggagattcgcgatctgtctaaggctgatgagggaaactatacctgcttcgcagagaac
aacagaggaaaagcaaacagcactggcactctttctgtgaaagagcccaccaaaatcacc
ctggagccatcaaacatcgatatcaccatgggcgaaaatggcacaatggagtgccatgca
ttccgcgatcccacgctggacctaaccttcatctggtcgaccaatggctaccccattgac
tttgagaaagagaaggactacatggaccgcaatgtactgactggagacggtggagaattg
ttctttaaaaatgcccagctgaggcacacgggcaaatacacctgcacagcccagaccatc
gtcgacagcacgtccgcctccgcagacctgattgtcagaggtccaccgggacctcctgga
ggggtaagagttgaaaacaccggagacacgtttgtgacactgtcctggagtcgaggtaca
gacaatcacagcccaatctccaagtataccattcggcagaagatttttgatttggatgaa
tggaaagaggccaaaacagaccctcaggatatagaaggcaacatggaaacagcaaaggtt
gtcgacttgatcccatggatggattatgaattcagtgtaatggcaaccaatactctcggc
attggggaacccagtttgccatcggcgaaaatcaggacagatgaagcagctcccaccgtg
gctccatccgatgtcgggggaggtggcggaaaccatcgggaactgacagtaacctggacg
cccctgccaagggagtaccattacggaagcagctttggttacatcgttgccttcaagcca
agtacggacaaggaatggaggaaagtgacggtgcccaaccccgaaggcaacagatacgtc
cacaaagatgactcgctgtctccaagcaccccatttgaagtcaaggtcaaagcatttaac
agcaagggaaatggaccgtttagcctgtctgctttcatttactcagcagaggatgagccg
agtgaagctcctttatttgtgactgccgggagcatctcatctatggaaatcgaagtaaca
tggttgcctgtgtcccaaccatcattggaaggctatgaaatcaggtaccgaagggacatt
gacaccgaggctgccgcacagcgagtgaggacaattggaactaacacgacagcgagaatc
cgagatctaaaaccccacacacgctatattgtggaagtcagggcctacaacaaggcagga
cctggccctcccagtaaacaagttggaatcactacaaggaaagcacctcccagcatgtca
ccgaaaataaccgacacctccatgatcgggacctacttcaggatttcctgggaatcggtc
aagccattggacaatgagtcaaatgtcgaaggctacaaggtgctgtacagaagagacggc
acggtaaacagtacgctgttacagacagtgggaaataatataaatataccgattcacgac
gagggagactacattgtggaagtgcgagcctatggagaaggaggggatggagcagtgaac
tcaatcaaaatttctaaaaggagcttaccctcggactcccctacaattgcaccatcaatt
ttgtgccttccattcagcctttcagattcaggagtcacactgccgatctcctacatgttg
cttagttttggcctgatccttggtgccatcagttgcttggagctgtga
DBGET
integrated database retrieval system
