Scyliorhinus canicula (smaller spotted catshark): 119954871
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Entry
119954871 CDS
T11175
Symbol
cacna1c
Name
(RefSeq) voltage-dependent L-type calcium channel subunit alpha-1C isoform X1
KO
K04850
voltage-dependent calcium channel L type alpha-1C
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau04010
MAPK signaling pathway
scau04020
Calcium signaling pathway
scau04260
Cardiac muscle contraction
scau04261
Adrenergic signaling in cardiomyocytes
scau04270
Vascular smooth muscle contraction
scau04912
GnRH signaling pathway
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
119954871 (cacna1c)
04020 Calcium signaling pathway
119954871 (cacna1c)
09150 Organismal Systems
09152 Endocrine system
04912 GnRH signaling pathway
119954871 (cacna1c)
09153 Circulatory system
04260 Cardiac muscle contraction
119954871 (cacna1c)
04261 Adrenergic signaling in cardiomyocytes
119954871 (cacna1c)
04270 Vascular smooth muscle contraction
119954871 (cacna1c)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
scau04040
]
119954871 (cacna1c)
Ion channels [BR:
scau04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
119954871 (cacna1c)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Ca_chan_IQ
GPHH
CAC1F_C
PKD_channel
Motif
Other DBs
NCBI-GeneID:
119954871
NCBI-ProteinID:
XP_038636405
LinkDB
All DBs
Position
20:complement(51594258..52820190)
Genome browser
AA seq
2185 aa
AA seq
DB search
MVNENKRMYIPEENHQGADYASNRAVLAHGLPNARTDGLASEHIPSPGAALSWQAAIDAA
RQAKAAAMMGNNMVSTANSTQRKRQQYNKQKKQANAATTRPPRALFCLTLKNPVRRACIN
IVEWKPFEIIILLTIFANCVALAVYIPFPEDDSNATNSNLERVEYLFLIIFTVEAFLKVI
AYGLLFHPNAYLRNGWNLLDFIIVVVGLFSAILEQATKAEGINPIGGKAAGFDVKALRAF
RVLRPLRLVSGVPSLQVVLNSIIKAMVPLLHIALLVLFVIIIYAIIGLELFMGKMHKTCL
FITTETIAEEEPAPCSLNVGHGRRCSNGTFCKIGWVGPNDGITNFDNFAFAMLTVFQCIT
MEGWTDVLYWMQDSMGYELPWVYFVSLVIFGSFFVLNLVLGVLSGEFSKEREKAKARGDF
QKLREKQQLEEDLKGYLDWITQAEDIDPENEDEGMDEDKPRNLSMPTNETESVNHENVAG
TELEDLTCCARVGLLRVALHHLRHRISKSKFSRYWRRWNRFCRRKCRAGVKSSVFYWLVI
FLVFLNTLTIASEHYNQPIWLTLVQDTANKVLLALFTGEMLLKMYSLGLQAYFVSLFNRF
DCFIVCGGILETILVETQIMSPLGISVLRCVRLLRIFKITRYWNSLSNLVASLLNSVRSI
ASLLLLLFLFIIIFSLLGMQLFGGKFNFDEMEKKRSTFDNFPQSLLTVFQILTGEDWNSV
MYDGIRAYGGPSFPGMLVCIYFIILFICGNYILLNVFLAIAVDNLADAESLTSAQKEEEE
EKERRKLARNSSPEKSADNEKQPIDEEKKAEKIELKTITSDGDMPPATKIGLDDYQVEEN
EEKNPYPTNEFPGDEEDDEPEMPVGPRPRPLSELHIKEKAVPMPDASAFFIFNTTNRFRV
LCHRIVNDNIFTNLILFFILMSSISLAAEDPVHQDTRRNQVLTYADYVFTSIFTVEIILK
MTAYGAFIHKGSFCRNYFNILDLVVVSVSLISFGMDSSAIAVVKILRVLRVLRPLRAINR
AKGLKHVVQCVFVALRTIGNIVIVTTLLQFMFACIGVQLFKGKLYTCTDGSKQREFECRG
QYIFYKDGDVNQPMISERKWDNSEFNFDDVPSAMMALFTVSTFEGWPQLLYRAIDSHTED
AGPIYNYRVEISIFFIIYIIVIAFFMMNIFVGFVIVTFQEQGEQEYKNCELDKNQRQCVE
YALKARPLRRYIPKNAYQYKVWYVVNSTYFEYLMFVLILLNTICLAMQHFGQSTKFSQAM
DVLNMLFTGLFTVEMILKLIAFKPRGYFSDPWNVFDFLIVIGSIIDVILSEINHYFCDAW
NIFDALIVVGSVVDIAITEVNPATNENASATSIPTNSDENSRISITFFRLFRVMRLVKLL
SRGEGIRTLLWTFIKSFQALPYVALLIVMLFFIYAVIGMQVFGKIAMLDTTHINRNNNFQ
TFPQAVLLLFRCATGEAWQEIMLSCLPGKLCEKESAFHEPEYNCGTHFAFFYFVSFYMLC
AFLIINLFVAVIMDNFDYLTRDWSILGPHHLDEFKRIWAEYDPEAKGRIKHLDVVTLLRR
IQPPLGFGKLCPHRVACKRLVSMNMPLNSDGTVMFNATLFALVRTALRIKTEGNLEQANE
ELRAIIKKIWKRTSMKLLDQVVPPAGDDEVTVGKFYATFLIQDYFRKFKKRKEQGIVGKA
VPKNALSLQAGLRTLHDIGPEIRRAISGDLTAEEELEKAMKEAASAASEDDIFRRAGGLF
GNHVSYYPSDCRGSFPQTFTTQRPLHLNKSGTSQVEIESPSHEKLVDSTFTPSSYSSSGS
NANINNANNTAISRFPIPVNYQSTVSTVDGHSNSLTSALILQGTTWKINPKRTRYYETLV
RSDSEDSRLPIIQREEASPDEIYDENFEEDPNCCSEESIRLNFYQEHDDDKQLTPTVDYC
EESDKKKQSPSKGFLSATSLGRRSSFHLECLKRQKNQGLEVPCTTPLSQRTALPLHLIQH
QALAVAGLNPLLRRSHSPTQFSRLCATPPATPCSRRRLQQHIPTFFLDGIESYEKLNSSL
PSVNCSSWNSDNSNGSIKKARPVSLTVPYPFKEKGTEFHGSAGSLVEAVLISEGLGRYAQ
DPKFVAATAHEIADACDMTIEEMENAADNLLNGNTKASPNGNLLPFVNCRDYQQHDIVQD
YTEEEQDCEKSEEEFTDEMVYVSTL
NT seq
6558 nt
NT seq
+upstream
nt +downstream
nt
atggtgaatgaaaacaagaggatgtatattcccgaggaaaaccatcaaggcgctgactat
gctagcaaccgggcagtacttgcccatggcctgcccaatgccaggacggacggtctggct
tcagaacacatcccaagtccaggggctgccttgtcttggcaagcggccatcgacgcggcc
agacaagccaaagccgccgcgatgatgggcaacaatatggtctctacggccaactcaacc
caaaggaaaaggcaacagtataacaagcagaaaaaacaagcaaacgccgcgaccacacgt
ccaccacgggctctcttctgcttgactctcaaaaaccctgtgaggcgagcatgtatcaat
atagtcgaatggaagccattcgaaataattattctcctaactattttcgctaattgtgtt
gccttagccgtctacatacctttcccagaagacgactcgaatgcaaccaattccaatctg
gaacgagtggaatatctctttctcatcatttttacagtggaagcatttttgaaagtaata
gcctatggacttctctttcaccccaatgcgtatcttaggaatggctggaatttactagat
ttcattatagtggttgtagggctttttagtgctattttagaacaagcgaccaaagcagag
ggaattaacccaattggaggtaaagctgctggattcgatgtcaaagctctaagagcattc
agagtcctacgaccattacgcctagtgtctggcgtccccagcctccaggtggtgttaaat
tcaatcatcaaggccatggtcccattgctacatattgctttgttggtgctgtttgtaatc
atcatctatgccattataggattagaactcttcatgggcaaaatgcacaagacctgctta
tttattacaacagaaacaattgctgaagaggaacctgcaccctgtagcttaaatgttgga
catggtcgccgatgttcaaatggcacgttctgtaaaattggatgggttggccccaatgac
ggaatcactaatttcgataattttgcctttgctatgttaaccgtatttcagtgcatcaca
atggaggggtggactgatgtcttatactggatgcaagattccatgggctatgagctccct
tgggtctatttcgtgagtctggtcatctttggatccttcttcgttttaaatctggttctt
ggcgtattgagcggagagttttccaaagagagggagaaggccaaagctcgtggtgatttt
caaaagctgagggaaaaacaacagttagaggaggatctcaaaggctatctggactggatt
acacaagctgaagacatagatccagagaatgaagatgaaggaatggatgaagataaacct
agaaacttgagcatgcccactaatgaaactgaatctgtgaaccatgagaatgtggctggt
acagaattagaagatttgacctgctgtgctcgagttgggttgctgcgggtggctctgcat
catttgaggcaccgaatttccaagtccaagttcagtcgatattggcgaaggtggaaccga
ttttgcaggagaaaatgtcgggctggagtgaagtccagtgtgttttactggcttgtaata
ttcctagtgttcctcaacaccctcaccattgcatctgaacactacaaccagcctatctgg
cttactctagttcaagacactgcaaacaaagtgcttttggcacttttcactggtgaaatg
ctgcttaagatgtacagtcttggacttcaagcttattttgtatcactctttaaccgtttt
gactgtttcattgtctgtgggggaatccttgagactattctggtggagacccagatcatg
tccccacttggtatttcagtgcttcgctgtgtgcgacttctgaggatatttaaaattaca
agatattggaattccttgagtaatctggtagcttcccttttgaattcagtgcgttccatt
gcttctttgttgctgcttctcttcctttttatcatcattttttcactcttgggtatgcaa
ctttttggaggaaagttcaattttgatgagatggaaaaaaaacgaagtacatttgataac
tttcctcagtcccttctcactgtcttccagatcctgacaggtgaagattggaactcagtg
atgtatgatgggataagggcatatggagggccatcttttccaggcatgctagtctgcatt
tacttcatcatcctcttcatctgcgggaactatatattattaaatgtattcttagccatt
gctgtggataatctagctgatgctgaaagtttgacttccgcccagaaggaagaggaagaa
gaaaaggaacgcagaaaactagccaggaactctagcccggaaaagtcagcagataatgag
aagcagccaatagatgaggagaagaaggcagaaaaaattgaattaaagacaataacttca
gatggagacatgcctcctgctacaaagattgggttggatgactatcaggttgaggagaat
gaggagaagaatccttaccctaccaatgaattcccaggagatgaagaggatgatgagccg
gaaatgcctgtaggaccacgtcctcggcctctctctgaactgcatataaaagagaaggct
gttcccatgcccgatgccagtgcattctttatcttcaatactacaaacagattccgggtg
ctgtgccacagaatcgtcaatgacaacatctttacaaatctcatcttgttcttcatcctc
atgagcagtatttctttggcagcagaagatcctgtccaccaggacacgagaagaaatcaa
gtccttacctatgcagattatgtcttcactagtatctttacagtagaaattatattaaag
atgactgcctacggggcattcattcacaaaggctccttctgcaggaattacttcaacata
cttgacctggttgtggttagcgtctctctcatctcttttggaatggactccagtgcaata
gcagtcgtaaagattctcagagtgctgcgagtattgagacctttaagagccattaataga
gcaaagggattgaagcacgttgttcagtgtgtgtttgtggccctgagaaccattggtaat
attgtgatagtgaccacgttactgcagttcatgtttgcctgtattggtgtacagctcttc
aagggtaaactctacacctgcacagatggatccaaacagagagagtttgaatgcagaggc
caatatattttctacaaagacggggatgtaaatcagccaatgataagtgaacggaaatgg
gacaatagtgaattcaactttgatgatgtcccctctgctatgatggccctttttactgtc
tcaacctttgaaggatggccacagttgctttatcgagccattgattctcatacagaagat
gctggtccaatttacaactacagagtggagatatccattttcttcatcatctatatcatc
gttattgccttcttcatgatgaatatttttgtaggtttcgtcattgtcacatttcaggaa
cagggggaacaggaatacaaaaactgtgaactggacaaaaatcagcgccaatgtgtggag
tatgccctaaaggctcggcctcttcggcggtatatcccaaagaatgcttaccagtataaa
gtgtggtatgtcgtaaattccacctacttcgaatacctgatgtttgttctgatactactg
aacacaatttgcttggcaatgcagcatttcggccagtcaacgaaatttagtcaagccatg
gatgtacttaatatgctcttcaccggactcttcacagttgaaatgattttgaagttaatt
gcattcaagcccagaggttactttagtgatccttggaatgtttttgacttcctcatcgta
attggcagcattatagacgtcattctgagtgagatcaatcactatttttgtgatgcatgg
aatatatttgacgccttaattgttgtgggtagcgttgttgatatagcaatcacagaggtg
aacccagcgacaaatgagaatgcctcagccacttccatccccacgaattcagacgaaaac
tctaggatttccattaccttcttccgtctatttcgggtgatgcgcttggtgaaactgcta
agtcgaggtgagggaatccgaacattgttgtggacgttcatcaaatcatttcaggcactg
ccatatgttgctcttctgatagttatgctgttcttcatctatgcagtgattggaatgcaa
gtgtttggaaagattgccatgcttgatactactcatatcaacaggaacaacaattttcaa
acctttccacaggctgtcctgttgctcttcagatgtgctacaggtgaggcctggcaggag
atcatgttatcctgtctcccaggaaaactttgtgagaaagagtcagcatttcatgaacca
gagtataattgtggaacccattttgctttcttctactttgttagtttctacatgctttgt
gccttcttgatcatcaacctctttgtggctgtaatcatggataattttgactatttaact
cgtgactggtccattcttggtcctcaccatctggacgaatttaagagaatctgggctgag
tatgaccctgaggccaagggtcgcatcaagcacttggatgttgttacgctcctgagaagg
atacaaccccctttaggatttggcaagctgtgtccacatagagtggcctgcaaacgcttg
gtatccatgaatatgccgttaaacagtgatggcactgtcatgttcaatgcaactctcttt
gctttggttcgaactgctttaaggatcaaaactgaagggaatttggaacaagcaaatgaa
gaacttcgagctattatcaagaaaatctggaaacgtacaagtatgaagttgttggatcaa
gttgtgccgccagcaggagatgatgaagttactgtcgggaagttttatgccaccttccta
atccaggattatttcagaaaattcaaaaagcgcaaagaacaaggcattgttgggaaagca
gtgccaaaaaatgcactctctctgcaggctggtctgcgtactttgcatgacattggccct
gagattcgtcgcgcaatatctggggacctgacagcagaggaagaactggaaaaagcaatg
aaagaggctgcttcagctgcatctgaagatgatattttcagaagggctggtggtttattt
ggtaaccacgttagctattatccaagtgattgtagaggctccttcccacaaactttcacc
acacagcgtcctttgcacctcaataagtcaggaacctctcaagttgaaatagagtcacca
tcccatgagaaattggttgattcaaccttcactccaagcagctattcttcctccggctca
aacgccaatattaacaacgccaacaatactgcaatatccagatttccaattccagtcaac
taccaaagcaccgtcagcacagtggatggtcatagcaattctttgacttcagcacttata
ttgcaaggcacaacatggaagatcaatcccaaaaggacacggtattatgaaacattggta
cgctcagactctgaagatagccgtttgccaatcattcagcgagaggaagcatctcctgat
gagatttatgatgagaactttgaggaagatcctaattgctgcagtgaagaaagtatacga
ctgaatttctatcaagagcatgatgatgacaaacagctcactccaacagtggattactgt
gaggaaagtgataaaaagaagcagtctccttcaaaaggatttctttcagcaacatcatta
gggagaaggtcatcatttcacctggagtgcctaaagagacagaagaatcagggcttggaa
gttccttgcacaactccactctctcagaggacagcactcccattgcatttaattcagcat
caggctttggctgttgcaggactaaatccattgttgaggagaagccattctccaacacaa
ttttccagactatgtgccactcctccagcaactccatgtagtagaaggaggttgcagcag
catattccaacattttttctggatggtattgaatcctatgagaaactaaacagcagcctc
ccatcagtaaactgcagctcctggaactctgacaactcaaatggaagtataaaaaaggcc
aggccagtctctctgaccgtgccctatcccttcaaggaaaagggaactgagtttcatggc
agtgctgggagtttagtagaagcggttctgatctcagaggggcttggtcgatacgcacaa
gatccaaaatttgttgctgcaacagcccatgaaattgctgatgcctgtgatatgacaatt
gaggagatggaaaatgcagcagacaacctgctcaatggcaacactaaggctagcccaaat
ggaaatctgttaccctttgtaaattgcagagactaccagcaacatgatattgtgcaagac
tacacagaagaggagcaggactgtgaaaaaagcgaagaggaatttacagatgagatggtt
tatgtaagcaccctgtag
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