Scyliorhinus canicula (smaller spotted catshark): 119961996
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Entry
119961996 CDS
T11175
Symbol
scn1laa
Name
(RefSeq) sodium channel, voltage-gated, type I-like, alpha isoform X1
KO
K04834
voltage-gated sodium channel type II alpha
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
scau04040
]
119961996 (scn1laa)
Ion channels [BR:
scau04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
119961996 (scn1laa)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_cytopl
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
IQ
Lustrin_cystein
Motif
Other DBs
NCBI-GeneID:
119961996
NCBI-ProteinID:
XP_038645628
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Position
2:228207980..228587591
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AA seq
2002 aa
AA seq
DB search
MAQPLLAPPGPDSLRLFTRESLAAIERCIAEKNAKRPKERHVDDDENGPKPNRDLEAGKS
LPFIYGDIPRGMVSEPMEDLDPFYSTQKTFIVLNRGKAIFRFSATPALYILSPFSPLRKV
AITILVHSLFSMLIMCTIMTNCVFMTMDNPPDWAKNVEYTFTGIYTFESLIKILARGFCI
DRFTFLRDPWNWLDFSVILMAYVTEFVNLGNVSALRTFRVLRALKTISVIPGLKTIVGAL
IQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLKHKCVQWPPPDSYFSASNSSLYLNDTL
ANETDFNYDTYIEDETNYYFLEEAKDALLCGNGSDAGQCPEGYMCLKAGRNPNYGYTSFD
TFSWAFLSLFRLMTQDFWENLYQQTLRAAGKTYMIFFVLVIFLGSFYLVNLILAVVAMAY
DEQNQATLEEAVEKEAKFQMMLEQLKKHQEEAQAAAAAAAEAGDGNGRIGLCEMSQSSSD
TSKLSSKSAKERRNRRKKRKQTEQEAEEKDNDERIHKSESEDNGRRGNGFRFSIDRNCLS
YEKRNSSPHQSLLSIRGSIFSPRRNSRSSIFSFKGRTKDIGSENDFADDEHSTFEDNESR
RGSLFIPRRHGERRSSNISQTSRSSRILPVLPVNGKMHSTVDCNGVVSLAGGPSTPTSPI
GRLLPEVIIDKPATDDNGTNTETDLKKRRTGSHQISMDFLEDPMQRQRALSVASILTNTM
EELEESRQKCPPCWYKFANTYLIWDCHPHWLKIKEIVHLIVMDPFVDLAITICIVLNTLF
MAMEHYPMTGRFENVLTYGNLVFTGIFTGEMIFKIIALDPYYYFQEGWNIFDGIIVSLSL
MELGLSNVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIF
AVVGMQLFGKSYKECVCKIDKNCKLPRWHMKDFFHSFLIVFRVLCGEWIETMWDCMEVAG
PSMCLVVFMMVMVIGNLVVLNLFLALLLSSFSADNLAATDDDSEMNNLQIAMGRIQRGID
YVKRNVRQVFHTVFIRRKVTEDIKPLDDLHNQKDVYITDHTTVEITKEVDYHKDGNCTTS
GIGSSVGKYNADESDYMSFIHNPSLTVTVPIAAGESDFENLNTEDFTSESDMEGSKEKLT
ESSSSEGSTVDRDPPGEGELPEEIPEESMEPEACFTEGCVQKFRYCYVNIEEGKGKSWWN
LRKTCYKIVEHNWFETFIIFMILLSSGALAFEDIYIEQRRTIKTMLEFADKIFTYIFILE
MLLKWVAYGFVKYFTNAWCWLDFLIVDVSLVSLVANALGYSDLGAIKSLRTLRALRPLRA
LSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKYYRCINITDGKILP
ISIINNKSQCLNNNETARWKNVKINFDNVGAGYLALLQVATFKGWMDIMYAAVDSRAVKE
QPDYECNLYMYFYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYYN
AMKKLGSKKPQKPIPRPLNKIQGMVFDFVTQQVFDITIMILICLNMVTMMVETEDQSIKM
DDVLHWVNMVFIVLFTSECVLKLIALRYYYFTIGWNTFDFVVVILSIVGMFLAEIIEKYF
VSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGM
SNFAYVRKESGIDDMFNFETFGNSMICLFQVTTSAGWDGLLAPILNSGPPDCNPTKDNPG
SPNKGDCGNPPVAILFFVSYIIISFLIVINMYIAIILENFSVATEESAEPLSEDDFEMFY
EVWEKFDSDATQFMEYGRLHDFADALEPPLRVAKPNRIQLIAMDLPMVSGDRIHCLDILF
AFTKRVLGEGGEMDALRQQMEERFMASNPSKISYEPITTTLRRKQEHVSATIIQRAFRRY
LIRRTLKQASFMFKEKGKTSELLPGKEEMVIDKFNEISTTDKTDMTPSTTSPPSYDSVTK
PEKAREEKEKEDRGKDVRAYKK
NT seq
6009 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagccactgcttgcaccgccaggaccagacagcctccgcctttttacccgagaa
tctcttgcagctattgagagatgcattgcagagaaaaatgccaagagacccaaggaacgt
catgtggatgatgatgaaaatggccccaagccaaatcgtgacttggaagccggtaaatca
ctaccatttatttatggtgacatacctcgagggatggtttctgagccaatggaagacctg
gatccattttatagcacacaaaaaacctttatagtattgaacagagggaaggcaatcttc
cgatttagtgccacacctgccttgtacattttaagtcctttcagtcctttaaggaaagta
gctattacgattttggtacattcattgttcagcatgcttatcatgtgcactattatgacg
aattgtgtgtttatgaccatggataatcctccagactgggcgaagaatgtagagtacacc
ttcactggtatttacacatttgaatcgcttataaaaattctcgcaaggggcttctgtata
gatcgtttcacttttcttcgagatccatggaactggctggatttcagtgtcattcttatg
gcgtatgtaacagaatttgtaaacctaggcaatgtctcagctcttcgaactttcagagtg
ttgagagctttgaaaactatttctgtaatcccaggtctcaaaaccatcgtgggtgcgctg
atccagtcagtgaagaagttgtccgatgtaatgattctgactgttttttgtttgagcgtg
tttgcactaatagggctacaactgttcatgggaaacctaaaacataaatgcgtacaatgg
ccaccacctgacagctattttagtgcaagtaacagctctttatacctgaatgatacactg
gcgaatgagacagatttcaactatgatacctacattgaagatgaaacaaattactatttc
ttggaagaagccaaagatgcactactttgtggtaatggctcagatgctggtcaatgtcct
gagggatatatgtgtctgaaagctggaagaaaccctaattatggttataccagctttgac
acatttagttgggcattcttatcattatttcggctgatgactcaggacttttgggaaaac
ctttaccagcagaccctgagggctgctggcaaaacatatatgatattttttgtgctggtc
atcttcctgggatcgttctacttggtcaatttgattctggctgttgttgccatggcctat
gatgagcaaaaccaagctactttagaggaagctgtggaaaaagaggcaaaatttcagatg
atgcttgaacagcttaaaaaacatcaagaagaagctcaggctgcagcagcagctgcagct
gaggcaggggatggaaatggacgaattggactttgtgaaatgtctcagagttcctcggat
acatcaaagctcagttcaaagagtgccaaggagagacggaacagaaggaagaaaaggaaa
caaacagagcaagaagccgaggaaaaggataatgatgaaaggattcacaaatcagaatca
gaggacaatggaagaagagggaatggctttcgattttccattgatcgtaactgcctttct
tatgaaaagagaaattcctccccacatcagtcactgttaagtattcgtggatccatcttt
tctccaaggcgcaatagcagaagcagcatcttcagtttcaaaggacggactaaagatata
gggtcagaaaatgattttgctgatgatgaacacagcacttttgaagacaatgaaagcaga
aggggctcactctttattccacggaggcatggtgagagacgcagcagtaacattagtcag
accagtaggtcctccaggatactaccagtgcttccagtgaatgggaagatgcacagcaca
gtggactgcaatggagtggtttcacttgccggtggaccttcaactccaacgtcacccatt
ggacgacttctgccagaggtgataatagataagccagctactgatgacaatggtactaac
acagaaacagaccttaagaagaggcgaacaggatctcatcagatttctatggatttcctg
gaagatcctatgcaaagacagagagctttaagtgtggccagtattctcacaaatactatg
gaagaacttgaagaatctcggcagaaatgtcccccatgctggtataaatttgcaaatacc
tacttgatctgggactgccatccacactggcttaaaataaaagaaattgttcatttaatt
gtgatggacccatttgtggatctcgctattacaatctgtattgtgctgaacactcttttt
atggccatggaacattacccaatgacaggaagatttgaaaatgtgctcacatatggaaac
ttggtatttactggtatctttactggtgaaatgattttcaaaattatagccctggatcct
tactattacttccaagaaggatggaacatttttgatggcatcattgtgagtctcagtcta
atggaacttggtctttctaatgtggaagggctatctgtgctgcgatctttccgattgctc
agagtttttaaattggcaaaatcatggccaacactgaacatgctgattaaaattattggc
aactcagtgggtgctttgggcaacttgactttggtgttagccatcattgtcttcatcttt
gctgtggtgggcatgcaactcttcggtaaaagctacaaggagtgtgtctgtaaaattgac
aagaactgtaaactgcctcgctggcacatgaaagacttctttcattcctttctaatcgtg
ttccgtgtgttgtgtggagaatggattgagacaatgtgggactgcatggaagtagctggt
ccgtctatgtgcctcgtcgtctttatgatggtcatggtaattggtaatcttgtggtattg
aatttatttttggctttgttactgagctcgttcagtgctgacaaccttgctgctacagat
gatgacagtgaaatgaataatttacagattgctatggggaggatacagagaggcattgat
tatgtaaaaagaaatgtgcgacaagtttttcacacagtctttatcaggaggaaagtcaca
gaagacatcaaacctcttgatgacttgcataaccagaaggacgtatacatcactgatcac
acaacagttgaaatcactaaggaggttgactatcataaagatggaaattgcactaccagt
ggaataggcagtagtgtggggaagtacaatgcagacgaaagtgactacatgtcctttatt
cacaatccaagtctcactgttactgtaccaatagctgcgggagaatcagactttgaaaac
ttaaacacggaagactttaccagtgaatcagacatggaaggaagcaaagagaaactgact
gaaagcagctcatctgaagggagcacagttgacagggatccacctggagagggagaatta
ccagaagaaataccagaagaatccatggaacctgaagcatgctttactgaaggatgtgtg
caaaaattccgatactgctacgtcaacatagaagagggcaagggcaaatcatggtggaac
ctccgaaagacctgctacaaaatagtggaacataattggtttgaaacattcattattttc
atgattcttctcagcagcggtgccctggcctttgaagatatttacattgagcaaaggcgg
accattaagacaatgcttgaatttgccgataaaatattcacctacattttcattctggaa
atgctgctgaagtgggtggcttacggttttgtgaagtatttcactaatgcttggtgttgg
ctggacttcctcattgttgatgtctctttagtgagccttgtagctaatgccttgggctac
tcggacctaggtgctattaagtccctgaggacactaagagctttgagacctctaagagcc
ttatcacgatttgaaggcatgagggtggtggtcaatgcacttcttggagcaattccttcc
atcatgaatgtgctgcttgtctgcctgatattctggctcattttcagtataatgggtgtg
aatcttttcgctggaaagtactaccgctgtatcaacataactgatggaaagatattaccc
atcagcattattaacaataaaagtcagtgtctcaataataatgaaacggcgcgatggaaa
aacgtaaagatcaacttcgacaatgttggagctggctaccttgctttactacaagtggca
acatttaaaggatggatggatatcatgtatgcagctgttgattcaagagctgtgaaggaa
caacctgactatgaatgcaatctgtacatgtatttttacttcgttattttcatcatcttt
ggatcgttcttcaccttaaatttgtttattggtgtgattatcgacaacttcaatcaacaa
aagaaaaagtttggaggtcaagatattttcatgactgaagaacaaaagaaatattacaat
gctatgaaaaaacttgggtccaagaaaccacagaaaccaatacccagacccttgaacaag
atccaaggaatggtgtttgattttgtaacgcagcaagtctttgatatcaccatcatgatt
ctcatctgccttaacatggtcaccatgatggtggagacagaagatcaaagtatcaagatg
gatgatgtcttacattgggtcaacatggttttcattgtccttttcacaagcgagtgtgtc
cttaaactgattgcactccgctattattactttacaataggctggaatacttttgacttt
gtggtggtcattctttcaattgtaggcatgttccttgctgaaatcattgaaaaatacttt
gtgtcaccaacattatttagagttatccgacttgccagaattggtcgcatcctgcgttta
atcaagggtgctaagggaatccgtacactgctgtttgcattgatgatgtctcttcctgct
ttgttcaacattggtctgttgctcttcttagtcatgttcatttatgccatttttgggatg
tctaattttgcttatgtgaggaaagagtctggcattgatgatatgttcaactttgaaaca
tttggaaacagcatgatatgcttgtttcaggtcaccacatctgctggctgggatggctta
ctggctccaattctaaacagtgggccaccagactgtaacccaacaaaagataatccaggc
agccctaacaaaggagattgtggtaacccaccagttgcaattttattctttgtcagttac
atcataatatctttcttgattgtcataaatatgtacattgctattattttggaaaatttt
agtgttgctactgaggaaagtgctgaaccattgagtgaggatgactttgagatgttttat
gaagtttgggaaaaatttgattcagatgcaactcaatttatggagtatggtagattgcat
gattttgcagatgccttggaaccacctcttcgtgttgcaaaacccaacagaatacaactt
atagctatggacctgcccatggttagtggagatagaattcactgtcttgatatattattt
gcatttacaaagcgcgtgctgggtgaaggtggagaaatggatgctctccgacaacagatg
gaagaacgctttatggcatccaatccatccaagatatcctacgagccaattacaaccact
ctacggcgtaaacaggaacatgtttctgcaactataattcagagagctttcagaagatat
ctgatcagacgaacattaaaacaagcctctttcatgttcaaagaaaaaggtaaaacaagt
gagcttttacctggcaaagaagaaatggtaatcgataagtttaatgaaatctccactaca
gacaaaactgatatgactccttctaccacatcaccaccgtcctatgacagtgtaacaaaa
ccagagaaagccagagaggagaaagaaaaagaagatagaggcaaagatgtaagggcgtat
aaaaagtaa
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