Scyliorhinus canicula (smaller spotted catshark): 119970804
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Entry
119970804 CDS
T11175
Symbol
crnkl1
Name
(RefSeq) LOW QUALITY PROTEIN: crooked neck-like protein 1
KO
K12869
crooked neck
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119970804 (crnkl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
scau03041
]
119970804 (crnkl1)
03036 Chromosome and associated proteins [BR:
scau03036
]
119970804 (crnkl1)
Spliceosome [BR:
scau03041
]
Complex B
Other components
Prp19-related factors
119970804 (crnkl1)
Complex C
119970804 (crnkl1)
Chromosome and associated proteins [BR:
scau03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
119970804 (crnkl1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT
HAT_Syf1_CNRKL1_C
TPR_14
Suf
TPR_19
TPR_CcmH_CycH
TPR_17
NRDE-2
Mad3_BUB1_I
U3_assoc_6
Motif
Other DBs
NCBI-GeneID:
119970804
NCBI-ProteinID:
XP_038661905
LinkDB
All DBs
Position
1:complement(196593175..196637488)
Genome browser
AA seq
688 aa
AA seq
DB search
MASTAAGKQRIPKVAKVKNKAPAELQITAEQLLREAKERELELLPPPPTQKITDEEELND
YKLRKRKTFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALDVDHRNVTLWLKY
AEMEMKNRQINHARNIWDRAITILPRVNQFWYKYTYMEEMLGNVAGGRQXFERWMEWQPD
EQAWHSYINFELRYKEIERARLVYEKFVFIHPDVKNWIKYARFEEKHAYIGHARKVFERG
VEFYGEDYMDEQLFVAFAKFEEKQKEFDRVRVIYKYALDRIAKQKAQELFKNYTVFEKKF
GDRRGIEDVIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDGDPDSVHEVYERAIANVP
PIQEKRHWRRYIYLWINYALFEELEAKDPEKTRQVYQACLELIPHKKFTFAKLWLLYAQF
EVRQKNLSLARRALGTGIGKCPKNKLFKGYIELELQLREFDRCRKLYEKYLEFSPENCTT
WIKFAELETILGDVERARAIYELAIGQPRLDMPEVLWKSYIDFEIEQEEYERTRNLYRRL
LQRTQHVKVWISYVQFELSVDVPERIPSCRKIYEDANRSLRNCEEKEERLIFLESWRDFE
KEFGTESSQDRVVKLMPERVKKRRKLQAEDGTDAGWEEYYDYIFPEDAANQPNLKLLAMA
KLWKKQLCDEKEPEDDPDKETDENETES
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgaccgcggctggaaaacagcgaatccctaaagtggcgaaggtgaaaaataaa
gcacctgccgaattgcaaatcacagctgaacagctcctgagagaagcaaaagagagggag
cttgaacttcttccaccacctccgacacaaaagatcactgatgaggaagaattgaatgac
tacaagctaagaaaaagaaaaacgtttgaagacaatatacggaaaaatcgaactgttatt
agcaactggatcaaatacgcacaatgggaggaaagcctaaaagaaatacagcgagcacgt
tccatttatgagagagcattggatgtcgatcacagaaatgttaccctatggttgaagtac
gcagaaatggagatgaagaatcggcagattaaccatgcccgtaatatctgggatcgagca
atcaccatcctgcccagggtcaaccagttttggtataaatacacctacatggaggagatg
cttgggaatgttgcaggaggacggcagngttttgagcgctggatggaatggcaacctgat
gaacaagcttggcactcctatatcaacttcgaactccgatacaaggaaattgaaagagct
agactggtttatgagaagtttgtttttatccatcctgatgtgaagaactggattaaatat
gctcggtttgaagaaaagcatgcctacattgggcacgcacggaaagtgtttgaaagagga
gtggagttttatggagaagactatatggatgaacagctctttgttgcatttgcaaaattt
gaagaaaagcagaaagaatttgatcgcgtgagggtgatctacaaatatgcacttgacaga
attgccaaacagaaggctcaagagctcttcaaaaactacacggtgtttgagaaaaagttt
ggggacagaagaggcattgaagatgttattgtcagcaaaaggcgctttcagtatgaagag
gaagtcaaggctaatccacataattatgatgcctggttcgactacctccgactggttgaa
agtgacggagatcctgattctgtacatgaagtgtatgaacgtgcaatagccaatgtaccg
cccattcaggaaaagaggcactggaggagatacatttacttatggatcaactatgctttg
tttgaagaactggaggcaaaggatccagagaagacgaggcaagtgtatcaagcatgcttg
gaactcatccctcataagaagtttacatttgctaaattgtggctgctgtatgcacagttt
gaggttcgacagaagaacctatcgctggccagaagggctttgggcactggcataggaaaa
tgtccaaagaacaagctgttcaaaggatacattgaactagaactacagcttcgtgagttt
gaccggtgtaggaaactctatgaaaaatacctggagttttctccagagaactgcactact
tggattaagtttgccgagttggagaccatccttggtgatgttgaacgtgctcgtgccatc
tacgaactggcaattggccaacctagactagatatgccagaggttctctggaaatcctac
atagactttgaaattgaacaggaagaatatgaaagaacaagaaacctatacagacgctta
cttcaacgtactcaacatgttaaggtatggatcagctatgttcaatttgagctttctgtg
gatgtgccagaacgcatacccagttgcagaaaaatctacgaggatgccaacagatcttta
cggaactgtgaggaaaaagaagaacgacttatattcttggagtcctggagagactttgag
aaagaatttggcacagagtcttcgcaagatagggttgtaaaactcatgccagaacgtgtc
aagaagaggagaaagcttcaagcagaagatgggaccgatgctggttgggaagagtattat
gattatatcttcccagaagatgctgccaatcagccaaacctcaagcttcttgcaatggcc
aagctctggaagaaacaactgtgtgatgagaaagaaccagaagatgatcctgacaaagag
acagatgagaacgagactgaatcctga
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