Scyliorhinus canicula (smaller spotted catshark): 119971086
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Entry
119971086 CDS
T11175
Name
(RefSeq) cadherin-5-like
KO
K06533
cadherin 5, type 2, VE-cadherin
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau04514
Cell adhesion molecule (CAM) interaction
scau04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
119971086
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
119971086
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
scau04515
]
119971086
04090 CD molecules [BR:
scau04090
]
119971086
Cell adhesion molecules [BR:
scau04515
]
Cadherins
Major cadherins
119971086
CD molecules [BR:
scau04090
]
Proteins
119971086
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
CADH_Y-type_LIR
Cadherin_FAT4_N
DUF2434
Motif
Other DBs
NCBI-GeneID:
119971086
NCBI-ProteinID:
XP_038662166
LinkDB
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Position
9:complement(5435497..5508076)
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AA seq
749 aa
AA seq
DB search
MLPLLLMVYILGCAAQSGPSIKGNSTGLQSDWIWNQLTCWEGETKPKQIGQINSRWHSKG
ITKYELRGEGVGSIFKVHPDNGKISAYRELDREVKARYKLEGLVINIKSNKQVGLSTNFS
IHVLDLNDNAPIFTKDPFNGTVPEMSDRGTSVLTVSAHDPDDPTVGKHTNVTYKILNDKK
NFFIEQMTGVIRVQNPDLDREREKDFRIIVQAKDMGLDPGGMSSTATVYISLTDIDDNVP
YFPQRMYNYSVTETARIGATIGRVKALDLDEGENARIVYTFVGQKSMFRIETDPRTQEGL
LTVKEPLDFEQQPLHRLELEAENPTTVNGVKYKNKTVLLVHVLDVDEPPVFSKTRYTFRV
YENLPVGTLVGKVLAQDPDKTKSSVSYSLRDGKEYFTIGKDDGIIKTIVELDREAIARHN
ITVEAHEVGKSNPTSNARVVIIVLDKNDNAPTLAEGDEAHICENDVAGTVIHVISAVDLD
EMTPAVRFHFSIAVKDSNFSVKDNGNNTANITIKRAGFDQKEVSKFFVPIVISDNGNPSM
STNNTLAINVCSCDQNRKPINCRNFAALTSGVTVTVLLIVFLCIIVAIFLAVLIVHQKMK
KKNAFIGLVKPPGEIREQLVRYDEEGGGEMDTNSFDITVLNSLRTNGPRPAKAMNCVPVY
AQVRKPNNDMGSVVRMKKDEADGDRVGLPYDTLHIYGYEGAESVADSLSSLDVSSIDSEQ
DYDFLNDWGPRFQMLAELYGSDPCREISD
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atgctccccctattgctgatggtctacattctgggttgtgcagcacaatcagggccaagc
ataaaaggcaacagcactggccttcaatcagactggatctggaaccagcttacctgctgg
gagggcgaaacaaaacccaaacaaatcggacagattaactcaaggtggcacagcaaagga
ataactaaatatgaactccgtggtgaaggggtcggatctatttttaaggtgcatccggac
aatggaaagatcagtgcctaccgagagttggaccgagaagtcaaggctcgttataaacta
gaaggacttgtgattaacataaagtctaataaacaagtgggtctttcaaccaacttcagc
attcacgtcctggacctgaatgacaatgcacccatatttacaaaagacccatttaatgga
actgttcctgagatgtctgatagagggacctctgttctcacggtgagtgctcacgaccct
gacgaccccactgtcggcaagcacacaaacgtaacctacaagatcctgaacgacaagaag
aatttctttattgaacagatgacaggagtcatacgtgttcagaaccctgacctggacagg
gagagggagaaagactttcgaatcattgtccaagccaaggacatgggactagatcctggc
gggatgagttcaactgctactgtatacatctctctgaccgacattgatgacaacgtaccc
tacttcccacaaagaatgtacaactattctgtaacagagacagccaggattggagctacg
atagggcgagtgaaagcactggacctggatgaaggagagaatgcgagaatagtttacacg
tttgtcggtcagaaaagtatgtttcgtattgaaacagacccacgcacacaagaggggctg
ctaacagtaaaggagcccctggactttgagcagcaaccactgcacaggcttgaactggaa
gcggagaatcccacaacagtgaatggggtgaagtacaagaacaagacggttctcctagtt
catgtactagatgtggatgagcctccagtgttcagcaaaacccgctacactttccgtgtc
tacgagaacctacccgttggcacgctggtagggaaggttttggcacaggaccctgacaag
accaaaagtagcgtcagctattcattaagagatgggaaggaatattttacaattggaaaa
gatgatggaattattaaaacaatagtggagctggaccgagaagctattgcccggcacaac
atcacggtggaagcccatgaagtcggtaaaagcaatcccacatccaatgctcgagttgta
attatagtgttggataagaatgataacgccccaactttggctgaaggtgatgaagcacat
atctgtgaaaacgatgtcgctggaacggtaatccacgtaatctctgctgtcgacctcgat
gaaatgacaccagccgtcagattccacttcagtatagcagtgaaggacagcaacttttct
gtaaaggacaatggcaataacactgccaacatcaccatcaagagggcgggcttcgatcag
aaagaggtcagcaagttttttgtgccgattgtcatctctgacaatgggaatccgtccatg
agcaccaacaacaccctggcaataaacgtgtgctcgtgcgaccaaaacaggaagccgatt
aactgccggaactttgctgcacttacctcgggagtaacagtgacagtcctgctgatcgtc
ttcctctgcatcatcgttgctatattcctggcggtgttgattgtccaccagaagatgaag
aagaagaatgccttcatcgggctggtaaagcccccgggcgagatccgagagcagctggtg
aggtatgatgaagaaggaggcggagaaatggacaccaacagctttgacatcacggtgctg
aactctcttcggaccaatgggccgcggccggcgaaagcgatgaactgcgtcccggtttat
gcccaggtcaggaagcccaacaacgacatgggctcggtggtgaggatgaagaaggatgaa
gcagatggcgacagggttggactgccctacgacacgctccacatctacggctatgagggc
gccgaatcagtcgctgattcactgagctccctggacgtctcctccattgactccgagcag
gattacgacttcctcaatgactggggaccccggtttcaaatgttggctgaactttacggg
tcagatccatgcagggaaatctcagattaa
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