Scyliorhinus canicula (smaller spotted catshark): 119971451
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Entry
119971451 CDS
T11175
Name
(RefSeq) cyclic nucleotide-gated cation channel beta-1-like isoform X1
KO
K04952
cyclic nucleotide gated channel beta 1
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau04744
Phototransduction
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09150 Organismal Systems
09157 Sensory system
04744 Phototransduction
119971451
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
scau04040
]
119971451
Ion channels [BR:
scau04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
119971451
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
cNMP_binding
DUF3915
Motif
Other DBs
NCBI-GeneID:
119971451
NCBI-ProteinID:
XP_038662919
LinkDB
All DBs
Position
9:78490678..78774734
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AA seq
1470 aa
AA seq
DB search
MFTWIAKVAPQPPQPTKHLETVSGGDSQLTEELKKKTVKVENTEQASSKNEPGICCDPGE
TQPASKQMLVPIAEESSGSGVLVWITENINRFIPQHPDSPKLSRAVSQSAKDTEVKEEER
STETKIPPPAPTTVPAPVSTPAPAPPPAPAPAPAPAPAPAPAPAPAPAPAPASAPAPAPA
PTPVSAPAPDTQLPSQLSPVQDQRDGGRGGGVLRWFVQGLEKVLPQPEGKPKSTNLTEAA
AEVTTAPQEKEEPAKPQKEETPAKTVPEPEAKSEPEAKPEPEAKPEPEAKPEPEAKPEPA
PAPAVKVEVVVVTETPKETIDHQAEPPADTAPTVKTVEMPHSSAGGSSVLGWLKQSLVKV
VPQPVMSSVPGTTEVEVKSALPENKVPVEEKKPEQNVTEVKVEVSKVTIIEVVPADPAPD
PVKVKEEKPIAMTSSKEDKSVFSWLVQGLGKAVPQPVIRSKLIKEVDGTTTACPTEEIPL
PKEMELEDVGRNDWDEDLQYLDAETQTSECEAMAQLTKETVVTEVTVVTQSSGNQSDGAP
EMDDERQLWSITEEQDVDAELQKVCEETESSEDQPTEEFTYQPGMECEETKSSEDLPPAE
PAQICEEAKTDEELPAAAPSLVCEETKSNEEEPPTEPLQVCEEAKSGEDLSPAAELEEAK
RNKDQPSKADLTDICPAGSDPIFCPEPKEKATEDQVPEAAETSPHKQEEEILMLELDEGD
RPTTSRPSVNIEVVDSEGHTLTTGHSNLPPIKVPCSPHKSQTLTVPCVSKSSQRNKSSHE
ENVDDPSQELPVQAWNSQTNLQVDDSSTDEQGSTTSITSAIVNERLQNLVRSFKKRTELV
KEKLIDPDASEDEESPPASPVKKAPDVPPPPQQEEEEEEDEHYCEMMCCRFKTEPWIRRI
KSVGFPSSVDPFSNPLYVLWLSIVVMAWNWNVWLIPVRCTFPYQTLDNVHWWLLMDYFCD
MIYLLDIAVFQSRLEFVQGGDIITARKPMRENYMKTPKFKMDLVSLFPLDILYIIFGFRT
VLRFPRLMKYTTFFEFNDRLEAIMNKAYIYRVIRTTIFLLYSLHLNACVYYWASDFEGIG
ATKWVYDGEGNSYMRCYYWAVKTLITIGGLPDPQNVFEILFQLINYFMGVFIFSIMIGQM
REVVGAATAGQTYYRSCMDNTVKYMNSYKIPRSVQSRVRKWYEFTWASQGMLDERDLLVQ
LPDKMRLDIAIDVNYSIISKVALFQGCDRQMIFDMLNRLKSVVFLPGDFVCKKGEIGREM
YIIKAGEVQVVGGPDEKTVFVTLRSGSVFGEISLLSVGGGNRRTANVVAHGFANLFILDK
KDLNDVIIHYPESQKLLRKKAKKLLSKDDKDEKPAARGFQHIIAPRPETPKLLIAALKLT
EKLGIKGTFSVLKQKIMESSKMQPIPMPPSSPVHRRSRVPGEEVVDDDDEVVSEASDYSV
LIRMSPSHHGDKEQILSVEIPDEGEKESEK
NT seq
4413 nt
NT seq
+upstream
nt +downstream
nt
atgtttacctggatagcaaaagttgccccacaaccccctcagcccaccaaacatcttgag
accgtatctgggggtgactctcagctcacagaggaactgaaaaagaaaacagtgaaagtt
gaaaatacagaacaagcgtcatctaaaaatgaaccaggcatctgttgtgacccaggagaa
acgcagcctgcatctaaacagatgttggtgcccattgcagaggaaagctctggaagtggt
gttctagtctggattacagaaaacatcaatagattcattccacaacatcctgatagcccc
aagctatcaagagctgtatctcaatcagcaaaggatacagaggtgaaggaagaagaaaga
agcacagagactaagatacctcctccagctccaactacagtaccagctccagtatcgact
ccagctccagctccacctccggctccggctccggctccggctccagctccagctccggct
ccggctccggctccagctccagctccagcgcctgcttcagctccagctccggctccagct
ccaacaccagtatcagctccagctccagatacgcaactaccgagtcagttatctcctgtc
caggaccaacgggatggagggcgaggtggtggagtgctcaggtggtttgtgcaagggctt
gagaaggtgttgccacaacctgaaggaaaacctaaatcaaccaacctcactgaagcggca
gctgaggtgaccacagctccccaggaaaaggaggaacctgcaaaaccacagaaagaagaa
acccctgctaaaacggtgcctgagcctgaagctaaatctgagcctgaagctaaacctgag
cctgaagctaaacctgagcctgaagctaaacctgagcctgaagctaaaccggagcctgcg
cctgctcctgcagttaaagtggaagtcgttgtggtaactgagactcctaaagaaactatt
gaccaccaggcagagccccctgcagacactgcacccacagtcaagacggttgaaatgcct
cactcgtctgctggtggcagcagtgtgcttggttggttgaaacaaagcctggtgaaggtg
gtccctcagcctgtaatgagttctgtgcctggcactacggaagtggaagtaaaatcagct
ctcccagaaaacaaggtcccagtggaagagaagaagccagaacagaatgtgactgaggtt
aaagtggaagtgtccaaagtcactattatagaagttgttccagctgatcctgccccagat
cctgtgaaagtgaaagaagagaagccaatcgccatgaccagcagtaaagaggataaaagt
gtattcagttggctagtccaaggtcttgggaaagctgtaccacagccggtgatcagatcc
aaattgataaaggaggttgatgggactacaaccgcctgtcccacggaagaaattccactt
ccaaaggagatggagttggaagatgttggaaggaatgactgggatgaagaccttcaatac
cttgatgctgaaacacaaacaagcgagtgtgaggcaatggcacagctcacaaaagaaacc
gtagtcactgaagtaacagtggtgacacaaagctctgggaaccaaagtgacggggcacca
gaaatggatgatgaaaggcagctgtggagtatcaccgaggagcaggacgtggatgcggaa
ctacagaaggtgtgtgaagaaactgagagcagtgaggatcagcccactgaagagtttacc
tatcaaccggggatggaatgtgaagaaaccaagagtagtgaggatctaccaccagcagaa
ccggcgcagatatgtgaagaagcgaagaccgatgaggaactaccagcagcagcgccatcg
ctggtatgtgaagaaaccaagagcaatgaggaagaaccacccacagaaccactgcaggtg
tgtgaagaagccaagagtggtgaggatctgtcaccagcagcagaacttgaagaagccaag
aggaataaggatcaaccctccaaagctgacctgactgacatctgcccagcggggagtgac
ccgatcttctgcccagaaccaaaggaaaaggcaactgaagaccaagtgccagaagcagct
gagaccagcccccacaagcaggaggaggagattttgatgcttgaattggatgaaggagat
cgtcctacgacttcccggccctcagttaacattgaagttgtggattctgaagggcatacc
ttaacaaccggacatagcaacttgccaccaattaaagtcccctgttcaccgcacaagagc
cagacacttacagtgccttgtgtctccaaatcatcacaaagaaataagtcctcccatgaa
gaaaatgtggacgatccatcccaggagttacctgtgcaagcctggaatagtcagaccaac
ctccaggttgatgatagttccacagatgaacagggttcgacaactagcattaccagtgct
attgttaacgagcgtctccaaaacctagtgagaagctttaagaagcgaacagaactggtc
aaggagaagctcattgaccctgatgcatctgaagatgaagaaagtccacctgcatcacca
gtcaagaaggccccggacgttcctcccccaccccaacaggaagaagaagaggaggaggat
gaacactactgtgagatgatgtgctgccgctttaaaacagaaccttggatcagacggatt
aaatcagtggggtttccatcaagcgttgatccctttagcaatccattatatgtgctgtgg
ttatccattgtggtgatggcctggaattggaatgtttggctaatccccgtgcggtgtacc
tttccctatcaaacacttgataacgtccactggtggctattgatggattatttctgtgat
atgatttacctgctggatatagcagttttccagtctcgcctcgagttcgtacaaggaggg
gacattataacagcaagaaagcctatgagggaaaattacatgaagacccctaaattcaag
atggacttggtgtctctttttcccctggacattttgtatattatttttggtttcagaact
gtactgaggtttccacgcctcatgaagtatacaaccttttttgaatttaatgaccggctg
gaagcaataatgaacaaggcctatatatacagagtgataagaacgaccattttcctactg
tatagtctccatttaaacgcctgtgtgtactactgggcgtccgactttgagggaattgga
gccacaaagtgggtttatgatggtgaggggaacagctacatgaggtgctattactgggct
gtgaagaccctgattacaatcggaggactaccagacccacagaatgtgtttgaaattctc
tttcaacttatcaactacttcatgggagtcttcatcttctctatcatgattggtcagatg
agagaagttgtgggtgcagctactgctggacagacatattatcgatcctgcatggacaac
actgtcaaatatatgaactcctacaaaattcctcgatccgtccagagccgggtgcggaag
tggtatgaattcacttgggcatcacaaggaatgctggatgagagggatttgttggtgcag
ctccctgacaagatgagactggacattgccatcgatgttaactacagcatcatcagtaaa
gttgcattgtttcagggctgtgacagacagatgatcttcgacatgctgaatcgactcaag
tcagtagtattcctgcctggagactttgtgtgtaagaaaggagagattgggagagaaatg
tacatcattaaagctggagaggtccaagttgttggtggtcctgatgaaaagactgtattt
gtgactctacgatcaggctcagtgtttggtgagatcagtttgctgtcggtgggaggtggg
aatcgacggactgcaaacgtcgttgcccatggatttgcaaacctcttcatcctcgacaag
aaagacttgaatgacgttataatccactacccggagtctcagaaactgctacgaaagaaa
gctaagaaactgctttccaaagatgacaaagacgaaaagccggctgcaagaggattccag
cacatcatcgcaccgaggccggagactcccaaattattgattgctgccctcaaattaacg
gaaaaacttggaatcaagggaacattctcagttcttaaacagaaaataatggaatcttcc
aaaatgcagcctattccaatgcctccttcctcccctgtccatcggcggtcacgtgttcca
ggagaggaggtggtggatgatgatgacgaggttgtttcagaagcatcggattactccgtc
ctgatcaggatgagtccctctcaccacggcgataaggaacaaatcctgtctgtagaaatt
ccagatgaaggagaaaaagaatcagaaaagtaa
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