Scyliorhinus canicula (smaller spotted catshark): 119971510
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Entry
119971510 CDS
T11175
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119971510 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scau03019
]
119971510 (cnot1)
Messenger RNA biogenesis [BR:
scau03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119971510 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
119971510 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
SCRE
Motif
Other DBs
NCBI-GeneID:
119971510
NCBI-ProteinID:
XP_038663051
LinkDB
All DBs
Position
9:complement(87966300..88210643)
Genome browser
AA seq
2382 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYKSSQQEISHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLCYAIDNPLHYQKSLKPSPYLFTQLSKVLK
LSKVQEVIFGLALLNSSSSDLRGFALQFVKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIGAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
TDSGGIAKTMDSSLADFMQEVGYGFCTSAEECRQIILQFGVREVTASQVARVLGMMARTH
SGLTDGISLQSISAPSSGIWSDGKDKSDSAQAHTWNVEIFIDVVKEVNPNLNFKEVTYEL
DHPGFLLRDSKGLQIAVYGIQKGMGIEVFPVDLLYRPWKHAEGQLSFIQHSLMNPDIFCF
ADYPCHTVVTDILKAPPEDDNREIATWKSLDLIETLLRLSELGQYEQVKQLFNFPIKHCP
DMLVLALLQINPTWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMHA
MAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKWL
TDKIREHGEPFIQACVTFLKRRCPSIMGGLAPEKEQPKSAQLPPETLATMLACLQACAGS
VSQELSETILTMVANCGNVMNKARQPPPGVMPKVRAPSTSSIETMSPVQVQIIDSLSGMA
SLTIGGSAASLTPSMQSFTTNLSSAFNTPQSPAKAFPPLSTPNQTTPFSGIGGLPSQLPG
SLGTGSLTGMGTGGLALPTVNTDPFGQRKMSTSGLNPQTFQQSKMKPSDLSQVWPEANQH
FSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSSIKREREVFNCMLRNLFEEY
RFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFDSKMYYFGIAALD
RFKNRLKDYPQYCQHLASIGHFLQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQ
AQAQAQAQNKTPLTRQVSAIVTTSTTTTVTKATTVTRPTGVSFKKDVPPSINTTNIETLL
VATDQAERIVEPPENIQEKVAFIFNNLSQSNMTQKVEELKETVKDEFMPWVSQYLVMKRV
SIEPNFHSLYSNFMDTLKNPEFNKMVLTETYRNIKVLLTSDKAAANFSDRSLLKNLGHWL
GMITLAKNKPILHIDLDVKSLLLEAYVKGQQEMLYVVPFIAKVLESSVRSMVFRPPNPWT
MAIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINDLKPGTLLKEKEKLTNLEEQLSAP
KRESKIPEELPVVVTTAAPVTPATTTTCTSTVPPQPQFSYHDINVYSLAALAPHITVNPN
IPLFQAHPQLKSYVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRV
AAHHMMRNLTAGMAMITCREPLLMSIATNLKNNFATALRAASPQQREMMEQAAAQIAQDN
CELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRL
KVGGVDPKQLAVYEEFARNIPGFLPSNDISQPTGFLAKPMQQAWATDDIAQIYDKCITEL
EQHLHAIPPTLAMNPQAQALRNLLEAVVMARNSRDAIAALGLLQKAVEGLLDATSGADPD
LLLRYRECHLLVLKALQDGRAYGSQWCNNKITRCLIECRDEYKYNVEAVELLIRHHLVNM
QQYDIHLAQSMENGLNYMAVAFAMQLVKFLLVDERSISHVTEADLFNTIETLMRISAHSR
GNAPEGLPQLMDLLRANYEAMMDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREW
VNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQQEQQH
NPTANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLLQDHE
VRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWL
ELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKFLAPYLRNVELTKPMQILYKGTLRVL
LVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEIN
IAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSELRSNLQVSRTRVSNEPGNRYNIQL
INALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQL
RYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPA
FKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7149 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgttatcgctggccttgtctcaaatcagctaccttgtggacaacctg
accaagaagaattacaaatccagccagcaggagatctctcatattgtgaaccgacacggc
ccggaggcagacagacatttattacgctgtctattctcgcacgtggatttcagtggcgat
ggtaaaagtagtggcaaagatttccatcagactcagtttctgattcaggagtgtgcgtcg
ctgatcaccaagccaaactttatctcgacgctgtgctacgccattgacaatccattgcac
tatcagaagagtctgaaaccttcaccctatctgtttactcagcttagtaaagtgctcaag
ttaagcaaggtccaagaggtcatctttggccttgcattgctgaattcttctagctcagat
ctgcgggggtttgctctccagtttgtgaaacagaaactcccagacctcctgcgatcttac
atcgacgcagacgtaagtgggaaccaagaaggtggctttcaggatattgcaatagaggtc
ctgcacctgctcctctcccatctcctttttgggcaaaaaggagcttttggtgttgggcag
gaacagattggcgctttccttaagacgttgcgcagagattttccgcaagagcgttgccct
gtggtgcttgcaccactgctatatcctgaaaaacgggacattctgatggataggatcctg
actgattcgggagggatagcgaaaacgatggacagctcactagcagattttatgcaagaa
gtaggctatggcttttgcacaagtgctgaagaatgccggcaaatcattttgcagtttggg
gttcgggaagtgacggcttctcaggttgccagggtgttggggatgatggctcggacgcat
tcaggcctgactgatggcatttccttacaatctatctctgcaccgagtagtggaatctgg
agcgatgggaaggataaaagtgactctgcacaggcccatacatggaacgtagaaatattt
attgatgtcgtgaaagaagtgaatccaaacctgaattttaaggaagtgacttatgaactg
gatcacccaggattcctccttcgtgacagcaaaggtctgcaaatagcagtgtatggaatc
caaaaagggatgggaattgaagtatttcctgttgatctcctctacaggccttggaagcat
gcagaaggacagctctcctttattcaacattcattaatgaacccagatatcttctgtttt
gctgactacccttgtcatactgtggtgaccgatatcttgaaagcccctccagaggatgat
aaccgagaaattgctacatggaaaagtctggacctcattgagaccttactgcgtctttcc
gagctgggacagtatgagcaggtcaaacagctcttcaacttccccatcaagcactgcccg
gacatgctggtactggccttactgcagatcaacccgacctggcacactctgcgccatgag
ctcatttccacactgatgccaattttcctgggcaatcatccgaattctgccattatcttg
cactatgcatggcacggacagggtcaatccccctcaatccgacagctgatcatgcacgca
atggcagagtggtacatgcgtggtgagcagtatgaccaggccaagctctcccgtattcta
gatgtagctcaagacttgaaggccttgtctatgctgctaaatggtactccatttgccttt
gttattgaccttgctgcacttgcatctcgccgagaatacctcaaacttgataaatggtta
actgataaaattcgtgagcatggggaaccatttatccaggcatgtgtgacgttcctaaag
agacggtgtccttccattatgggtggactggccccagaaaaggaacagcccaagagtgct
cagcttcctccagaaacactggctaccatgttggcttgcttgcaagcctgtgcagggagt
gtttcacaggagctgtcagagaccatcctcactatggtggccaactgtggcaatgtcatg
aataaagcccgtcaaccacctcctggagtaatgcccaaggtccgcgcacccagtaccagc
agtatagaaaccatgtcacctgtacaggtacaaataattgactctttgtctggcatggct
tcgttgaccattggtggatcagctgcatctctcactccaagtatgcagagtttcactact
aatctaagttctgcattcaacacccctcaatcaccagcaaaagcctttcctccactctct
acaccaaaccagacaactcctttcagtggaattggcggtcttccttctcagctcccaggt
agtttgggtacagggagtttgactggcatgggaactggtggacttgcactaccaactgtg
aacactgatccctttggacagcgaaagatgagcacatctggactgaacccacagacattc
cagcagagtaagatgaaaccttctgacctttctcaggtatggccagaggcaaatcagcac
tttagcaaggagattgatgacgaagcaaacagctacttccaacgtatctacaaccatcca
ccccatcctaccatgtctgttgatgaggttttggaaatgctgcagaggtttaaggattcc
agcattaagcgtgaaagggaggtttttaactgtatgctacgtaacctcttcgaggagtat
cgcttcttcccccagtacccagataaggagctgcacatcactgcctgcctgtttggtgga
attatcgaaaaggggctggtcacctatatggcattgggacttgcactgcgctatgttctt
gaggcattgcgcaaaccttttgactccaagatgtactactttggtattgctgcactagac
agatttaaaaatagattgaaggactatccgcagtattgtcagcacttggcttctataggc
cacttcctacagtttcctcatcatttacaggagtacattgagtacggccagcagtccaga
gaccctcctgtgaaaatgcaaggtagcattacaacccctggcagtattgcattggcccag
gctcaggcccaagcacaggctcagaataagacccccctcaccagacaagtcagcgccatt
gtaaccacgtccacaaccactaccgtgaccaaagccactacagttaccaggccgactgga
gtgagctttaagaaagatgtacctccctccattaatacaacgaacatagaaacattgttg
gtggccacagaccaggcagagaggatagtggaaccacctgagaatattcaagaaaaagtg
gcttttatcttcaacaatctctcgcagtccaacatgacacagaaggtggaagagctaaaa
gagactgtgaaggatgaatttatgccctgggtatcccagtatttggtcatgaagagagtc
agcattgaacctaactttcacagtctctactcaaactttatggacacgttgaagaatcct
gagtttaacaaaatggtactcaccgagacatacagaaacatcaaggtactgttgacatct
gacaaggctgcagcaaacttttcagaccggtcgctgttgaagaacctgggccactggttg
ggcatgataaccctagccaaaaataaacccattttgcacattgatctcgatgtgaaatct
ttgctgctggaggcttatgtgaaaggtcagcaagagatgctctacgttgtcccttttatt
gccaaagttttagaatcgagcgttaggagtatggtttttagacctccaaatccttggaca
atggccatcatgaatgtactagcagagctgcatcaagagcatgatttgaagttaaacctg
aagtttgaaattgaggtcttgtgtaaaaatctggctttggatattaacgacttgaagcct
ggaactttactaaaggagaaagaaaaattgacaaatctagaggaacagctctctgctcca
aagagagagtccaaaataccagaggagctgcctgtagttgtcaccactgctgcaccagtg
actccggccacaaccaccacttgtacatctacagtccctccacagccacagtttagctac
cacgacatcaatgtgtattcactggctgccttggctcctcacattacagtcaacccaaat
attcctttgttccaagcccaccctcaactgaaatcatacgttcggcaagcaatagagcgt
gctgtgcaggagcttgttcatcctgttgttgaccgttccatcaagattgccatgaccaca
tgtgaacagatagtcaggaaagattttgccttggattctgaggagtcacggatgcgagtt
gcagcccatcacatgatgcgtaacctcactgcgggaatggctatgattacatgcagggag
ccattgctaatgagcattgctacaaacctaaagaataattttgccactgcattacgggct
gcatccccacaacagagggaaatgatggaacaggcggctgcacagatagcacaagacaac
tgtgagctagcgtgctgttttattcagaaaacagctgttgaaaaggcaggccctgaaatg
gacaaacggcttgcaacagaatttgaacttcgaaagcatgccagacaggagggtcgacgt
tactgtgatcctgtggtgctgacttaccaggctgagcgtatgcccgagcaaatcagattg
aaggtgggaggtgtagatcctaaacagctagctgtgtacgaagagtttgcacgcaacatc
ccaggatttctgcccagcaatgacatctctcagcccactggtttcttggccaagcccatg
cagcaagcttgggcaactgatgatattgcccagatttatgacaagtgcatcacagaactg
gaacagcatctacatgcaattccaccaactctggccatgaaccctcaggctcaggcactc
cgtaacttactggaggctgtggtaatggccaggaactcccgtgatgctattgctgctcta
ggcctcttgcagaaggctgtcgagggactgctggatgccacaagtggtgcggacccagat
ctcttgcttcgctatcgtgaatgccatttgttggttttgaaagccctgcaggatggtcgt
gcctatgggtctcagtggtgtaacaacaaaatcaccaggtgcctgattgagtgtcgtgac
gagtacaaatataatgtggaggctgtagaactgctcattcgacaccatctggtcaacatg
cagcagtatgacatccatttagcccagtcaatggaaaatggcttgaattacatggctgtg
gccttcgccatgcagttggttaagtttttgttggtcgacgagaggagcattagtcacgtt
actgaagcagatctgttcaacaccattgaaacacttatgaggataagtgctcattccaga
ggaaatgcacctgaaggattgccgcagcttatggatctgcttagagccaactatgaagct
atgatggaccgtgcacacggtggccccaattttatgatgcactctgggatatcacaggcg
tccgaatatgatgacccaccagggcttcgggagaaagcggagtacttgttgagagagtgg
gtaaacctataccattcagcagcagctggaagggacagtaccaaagcattctccgccttt
gttgggcagatgcaccagcagggaatcctgaagaccgatgacctgattactcgctttttc
cgcctatgtactgaaatgtgtgttgaaattagttatcgtgcacagcaggagcaacagcac
aatcccacagccaatcccacgatgatcagggccaagtgctaccacaacctggatgcattt
gtcagattgatagccctgctggtcaagcactctggagaggccaccaacacagtcactaaa
atcaaccttctcaacaaggtactggggattgtcgttggagtcctactgcaagatcatgaa
gtacgtcagagtgaatttcagcagctgccatatcatcgaatcttcatcatgttgttgctg
gagctaaatgctcctgagcatgtcctggaaactatcaacttccagacactgactgctttc
tgcaacacatttcacattttgcggcctactaaagctcctggctttgtctatgcctggctg
gaactgatttcccatcggatcttcattgcaagaatgctggcgcatacaccccaacagaag
ggctggcccatgtatgcccagctgctgatcgatctgtttaagttcctggctccttacttg
aggaacgtggagttgacaaaacctatgcaaattctttacaagggcactctgcgtgtcttg
cttgtccttttgcacgactttccagagttcctctgtgactaccattatggcttctgtgat
gtgatcccaccaaactgtattcagctgcgtaacctgatcctgagtgccttcccacggaat
atgcgactgccagatccgttcacacctaatctaaaggtggatatgctgagtgaaatcaac
attgctcctcggatattgaccaacttcacaggagtgatgccacctcagtttaagaaggac
ttggattcctatttgaagacccgttcaccggtcacctttctctccgagctacgcagtaac
ctgcaggtgagcaggacaagggtatcaaatgaacctggtaatcggtacaacatccaacta
ataaatgccctggtgctgtatgtgggaacgcaggcgattgctcacattcataacaagggc
agcacgccatccatgagcaccatcacacattctgcccacatggacatcttccagaacctg
gctgtggaccttgacacagaaggtcggtatttgttcctgaatgccattgccaatcagctg
cgttacccaaacagccacacacactatttcagctgtactatgctgtatctgtttgctgaa
gccaacacagaagctatacaggagcagatcaccagggtgcttttggagaggctaattgta
aacaggcctcatccgtgggggctcctcatcaccttcattgagctgattaaaaacccagcc
ttcaaattctggaaccacgagtttgtccactgtgcacctgagattgaaaagttgttccag
tctgtagctcagtgctgtatgggacagaagcaggcacaacaagtaatggaaggcactggc
gccagttaa
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integrated database retrieval system
