Scyliorhinus canicula (smaller spotted catshark): 119975486
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Entry
119975486 CDS
T11175
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau03018
RNA degradation
scau03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119975486
09123 Folding, sorting and degradation
03018 RNA degradation
119975486
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scau03019
]
119975486
03041 Spliceosome [BR:
scau03041
]
119975486
Messenger RNA biogenesis [BR:
scau03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119975486
mRNA degradation factors
5'-3' decay
Lsm complex
119975486
Spliceosome [BR:
scau03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
119975486
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
HTH_ParB
Motif
Other DBs
NCBI-GeneID:
119975486
NCBI-ProteinID:
XP_038671149
LinkDB
All DBs
Position
1:complement(291285123..291285685)
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AA seq
151 aa
AA seq
DB search
MLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWKMPECYIRGSTIKYLRIPDE
IIDMVKEEVVSKGRGRGLQQQKQQQQQKGRGAGGGAGRGVFGGRGRGVARANRGHEKKLG
KLSGVKKLQRESCLCVFVCVSESDSENLSFV
NT seq
456 nt
NT seq
+upstream
nt +downstream
nt
atgcttgtggagttgaagaatggagaaacctacaatggtcacttggtcagctgtgacaac
tggatgaatattaacttgcgagaggttatttgtacgtccagggatggggacaagttctgg
aagatgccggaatgttacattcgtggcagcaccattaaatatctgcgcatccctgatgaa
atcattgatatggtgaaagaagaggtggtgtcaaagggcagaggtcgtggcctccagcaa
cagaagcagcagcaacaacagaaagggcgaggagctggtgggggtgctggcagaggtgtg
tttggtgggaggggccgtggagtggccagagcaaaccgaggacacgagaagaagctggga
aagttatcgggagtaaagaaactgcaaagagaatcatgtctgtgtgtgtttgtgtgtgtg
agtgagtcagattctgaaaatctttcttttgtgtaa
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