Parasphaerochaeta coccoides: Spico_0397
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Entry
Spico_0397 CDS
T01469
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
scc
Parasphaerochaeta coccoides
Pathway
scc03410
Base excision repair
scc03430
Mismatch repair
scc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
scc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Spico_0397
03430 Mismatch repair
Spico_0397
03440 Homologous recombination
Spico_0397
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scc03400
]
Spico_0397
DNA repair and recombination proteins [BR:
scc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Spico_0397
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Spico_0397
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Spico_0397
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
DUF2120
DNA_ligase_aden
Motif
Other DBs
NCBI-ProteinID:
AEC01626
UniProt:
F4GHT8
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All DBs
Position
466702..468828
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AA seq
708 aa
AA seq
DB search
MTWEKKRVSTETVGKLHERLGLDVITASILARRGIEEVQDVKFFLENELTFLHNPFHFDD
MEVFVERMQQAVEDKEKVRIFGDRDVDGITGTVLLHQEFERLGLDASYKLPEGDEPYGLT
MAGVDAAHADGVTLLVTVDCGISNNDEIAYASTLGLDTLVLDHHLGGDVLPPAMAIINPK
LEGSGYPFSHLAGCGVAAKCIWALRFSYTDFFREECILLHAQPGNDTVIIRALRLRNMIV
DDRISEEVVPGMLPPEKSRLLQFLSAGVPILVLDEEEETSQLRKAFGRGVDIHCVSMRQE
MEKVLPQIRGKSIFALTSISRGARYGLLGRDELDALYMLFMAFVMHKEPLLSEDYDSLLD
LVAIGTIADLMPMIDENRILVRRGLSVLKSSRRKALQPLMAMQNLIGRSLSTTDISWNLT
PLINAAGRMGEPSIAVEMLLSKDAHESERLAGELVQLNKKRQKMGEDVWVRLEPKAKASK
ESHGGKFLMVEDPSISRGLTGIMASRLLRQFSIPSLVIAKTDDHRVTGSMRSPDDFHVRD
FLSQFEDLFLDYGGHARAGGFSMETDNLSGFKDRLMDVVERMDGVDEHGESIRIDCSLPA
RFMTPDIMKVVEFFEPYGEQNPPIHFMIEGAIISDISSMNNRQGSDHLRLSVSYGSHTWP
AVYWQAADKLDREFSLGDSVNVVFRLGRNYFRNTEIVQLTVMDIVRHS
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgacatgggaaaagaaaagggtttccacggagactgtcgggaaactgcacgagcggctt
ggactggatgtaatcacggcctctatactggcgcgacggggcattgaggaagtccaggat
gtaaaattcttcctggagaacgaactgacgttcctgcacaatcccttccatttcgatgac
atggaagtgttcgtcgagaggatgcagcaggctgtcgaagataaggagaaagtccgaatc
tttggcgacagggatgtcgatggcatcacagggacggtgctgcttcatcaggaatttgag
cgtctgggactggatgcttcctataagttgcccgaaggtgacgagccgtatggactgacc
atggcgggcgtagatgccgcgcatgctgacggggtgacacttttggtgacggtggactgc
ggaatttccaacaacgatgagattgcgtatgcttcgactttgggactcgacacgttggtt
ctcgaccaccatctaggcggagatgttctgccgcccgccatggcaatcatcaatccgaag
ctggaagggagcggctatccattctcccatctggcgggatgcggggtagcggcgaagtgc
atctgggcgttacggttctcatatacggactttttccgggaggagtgcatccttctccat
gcccagccaggaaacgacacggtaatcatcagggcgttgcgcttgcgcaacatgattgtg
gatgatcggatttctgaggaggtcgtgccgggaatgcttcctccggaaaaaagccgactg
cttcagttcctctctgccggtgttcctatccttgtccttgacgaggaggaggagaccagt
cagttgcgtaaggcgtttggtcgcggggtggacatccattgtgtgtcaatgcgtcaggag
atggaaaaagttctgccgcagatacggggcaagagtatctttgccttgaccagcatcagc
cgaggcgcccgctacggactactgggtcgggatgagcttgatgctttgtacatgcttttc
atggcgttcgtcatgcacaaggagcctttgctttccgaggactatgattccctgctcgac
ttggtggctattgggactatcgcggacttgatgccgatgattgatgagaacagaatcctg
gtgcggcgtgggctgtccgttctcaagtccagtcgtcgcaaagctctccagccgctgatg
gccatgcagaatctcattggacggagtctatctacgacggacataagctggaacctgacg
cccttgattaacgccgcagggcgcatgggtgaaccgtccatcgccgttgagatgctgctg
agcaaggatgcccatgaaagcgagaggctggcaggagagctggttcagcttaacaaaaaa
cgtcagaagatgggagaggatgtctgggtacgtcttgaacccaaggcaaaggcaagcaag
gaaagtcatggaggcaagttcctgatggttgaggatccctcgatcagcaggggattgact
ggcatcatggcaagccgcctgctccgtcagttcagcatcccgtcacttgtcattgccaag
acggacgaccaccgggttaccggctccatgcgcagccctgatgattttcacgtcagggat
ttcctgtcccagtttgaagacttgttccttgattatggaggacatgcgcgggcgggaggt
ttctccatggagacggataacctgtccggtttcaaggacaggctgatggacgtggtggaa
aggatggacggcgtggacgagcatggcgaaagtatcaggattgactgttccctgccagca
cgtttcatgacgccggacatcatgaaggtcgtggaatttttcgagccatacggggagcag
aatccgcccatacatttcatgattgagggtgcgattatctctgatatatcttccatgaac
aacaggcaaggctctgaccatctccgtctgtcggtttcctacgggagccatacatggccg
gctgtctactggcaggcggctgacaagttggacagggagttttcccttggggatagtgtc
aatgtcgttttccggcttggccgcaactatttccgcaatacggagattgtgcagttgacc
gtaatggacattgtccggcactcttga
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