Streptococcus parasanguinis FW213: Spaf_0278
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Entry
Spaf_0278 CDS
T02115
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
scf
Streptococcus parasanguinis FW213
Pathway
scf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
scf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Spaf_0278 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scf03021
]
Spaf_0278 (rpoC)
03400 DNA repair and recombination proteins [BR:
scf03400
]
Spaf_0278 (rpoC)
Enzymes [BR:
scf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Spaf_0278 (rpoC)
Transcription machinery [BR:
scf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Spaf_0278 (rpoC)
DNA repair and recombination proteins [BR:
scf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Spaf_0278 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AFJ25300
UniProt:
I1ZJS6
LinkDB
All DBs
Position
293946..297599
Genome browser
AA seq
1217 aa
AA seq
DB search
MVDVNRFKSMQITLASPSKVRSWSYGEVKKPETINYRTLKPEREGLFDEVIFGPTKDWEC
ACGKYKRIRYKGIVCDRCGVEVTRAKVRRERMGHIELKAPVSHIWYFKGIPSRMGLTLDM
SPRALEEVIYFAAYVVIDPKDTPLEHKSIMTEREYRERLREYGPGSFVAKMGAEAIQDLL
KQVDLEAEIALLKEELKTATGQKRVKAVRRLDVLDAFYKSGNRPEWMVLNILPVIPPDLR
PMVQLDGGRFAASDLNDLYRRVINRNNRLARLLELNAPGIIVQNEKRMLQEAVDALIDNG
RRGRPITGPGSRPLKSLSHMLKGKQGRFRQNLLGKRVDFSGRSVIAVGPTLKMYQCGVPR
EMAIELFKPFVMREIVARDIVQNVKAAKRLVERGDERIWDILEEVIKEHPVLLNRAPTLH
RLGIQAFEPVLIDGKALRLHPLVCEAYNADFDGDQMAIHVPLSEEAQAEARILMLAAEHI
LNPKDGKPVVTPSQDMVLGNYYLTMEEAGREGEGMVFKDRDEAVMALRNGYVHLHTRVGI
ATDSLNKPWTEAQQHKILLTTVGKILFNDIMPAELPYLQEPNNANLTEGVPAKYFLEPGQ
DAKSAIEKLELNVPFKKKNLGNIIAEIFKRFRTTETSAFLDRLKDLGYHHSTLAGLTVGI
ADIPVVEDKAEIIEESHKRVEQITKQFRRGLITDDERYNAVTAEWRAAREKLEKRLVDNQ
DPKNPIVMMMDSGARGNISNFSQLAGMRGLMAAPNGRIMELPILSNFREGLSVLEMFFST
HGARKGMTDTALKTADSGYLTRRLVDVAQDVIIREDDCGTDRGLVIRAITDGKEMIEPLE
ERLTGRYTKKSVKHPETGEVIVGPDTLISEDLAREIVHAGVEEVTIRSVFTCNTRHGVCR
HCYGINLATGDAVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVASNTDITQGLPRVQEI
FEARNPKGEAVITEVKGEVTAIEEDASTRTKKVFVSGATGEGEYVVPYTARMKVEVGDQV
SRGAALTEGSIQPKRLLAVRDVLSVETYLLAEVQKVYRSQGVEIGDKHIEVMVRQMIRKV
RVMDPGDTDLLMGTLMDITDFTDANKDVLISGGVPATARPVLMGITKASLETNSFLSAAS
FQETTRVLTDAAIRGKKDHLLGLKENVIIGKIIPAGTGMARYRNLEPQAINEVEIIEEVP
VTDGTVDEVQTAEVVEE
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
gtggttgatgtaaatcgttttaaaagtatgcaaatcaccctagcttctccaagcaaggtc
cgttcatggtcttatggagaggtcaagaaacctgaaacaatcaactaccgtacattgaaa
ccagaacgtgaaggtctctttgatgaagtcatctttggacctacaaaagactgggaatgt
gcgtgtgggaaatacaaacgaatccgttacaaagggattgtttgtgaccgctgtggggtt
gaagtaacacgtgcgaaagttcgtcgtgaacgcatggggcacattgagttgaaagcacct
gtatcacacatctggtacttcaaaggaatcccttctcgtatgggattgaccttggatatg
agccctcgtgcccttgaagaagtcatctacttcgcagcttatgtggtgatcgatccaaaa
gatactccacttgagcacaaatccatcatgacggaacgtgaataccgtgaacgcttgcgt
gaatacggaccaggttcctttgtagctaagatgggtgcagaagccatccaagacctcttg
aaacaagtggatttggaagctgaaattgctctcttgaaagaagaattgaagactgcaact
ggtcaaaaacgtgtgaaggctgtgcgtcgtttggatgtcttggacgccttctacaaatct
ggcaacaggcccgaatggatggtcctcaacatccttcctgttattccaccagatcttcgt
ccgatggtccaattggatggtggccgttttgccgcctctgacttgaatgacctttatcgc
cgggtaattaaccggaacaaccgtttggctcgtttgttggaattgaatgcaccaggtatc
atcgtgcaaaacgaaaaacggatgctccaagaagcggttgacgctttgatcgacaacggt
cgtcgtggtcgtccaatcacaggaccaggtagccgtccactcaaatcattgagtcacatg
ctcaaagggaaacaagggcgcttccgtcaaaacttgctcggtaaacgggtggacttctca
ggacgttccgttatcgccgttggtccaactctgaagatgtaccaatgtggtgtgccacgt
gaaatggccatcgagctcttcaaaccatttgtcatgcgtgaaatcgttgcgcgtgatatc
gtacaaaacgttaaagctgcaaaacgcttggtcgaacgtggagatgaacgtatctgggat
atcttggaagaagtcatcaaagaacacccagttctcttgaaccgcgcaccgacccttcac
cgtttggggatccaagcctttgaacctgtcttgattgacgggaaagcccttcgcctgcac
ccccttgtctgtgaagcctacaatgccgacttcgatggagaccaaatggccatccacgta
ccgctttcagaagaagctcaagcagaagctcgtatcttgatgttggctgctgagcatatc
ttgaatcctaaagatggtaaaccagtcgttacgccatctcaggatatggtattggggaac
tactacctcactatggaagaagctggtcgtgaaggcgaaggcatggtctttaaagaccgt
gatgaagccgtgatggctcttcgcaatggctatgttcacttgcatacacgtgtcggaatt
gcgacggatagcttgaacaaaccttggacagaagcacaacaacacaagattctcttgaca
actgttggtaagattctctttaacgatatcatgcctgcagagcttccataccttcaagag
cctaataatgccaacttgacagaaggtgttccagctaagtacttcttggagcctggtcaa
gatgccaaatcagcgattgagaaattggaattaaacgttccattcaagaagaaaaatctt
ggaaatatcatcgccgaaatcttcaaacgtttccgtacaactgaaacgtctgctttcttg
gaccgcttgaaagacttaggttaccatcattcaacccttgctggtttgacagtgggaatt
gccgatattccggtcgttgaagacaaggcagaaatcattgaagaatctcacaaacgtgtg
gaacaaatcaccaaacaattccgtcgtggtttgatcacagatgacgaacgctacaatgcc
gttacagctgaatggcgtgcagctcgtgagaaattggaaaaacgcttggtggataaccaa
gatccgaagaacccaatcgttatgatgatggactctggagcccgtggtaacatctcaaac
ttctcgcaacttgccggtatgcgtggtttgatggccgctccaaacggacggatcatggaa
ttgccaatcctttcaaacttccgcgaaggtttgtcagtactcgaaatgttcttctcaact
cacggtgcccgtaaagggatgaccgatacggccttgaagacagccgactcaggttacttg
actcgtcgtttggttgacgttgctcaagacgttattattcgtgaagatgactgtggaaca
gaccgtggacttgtgatccgtgccattactgatggtaaggaaatgatcgagccactcgaa
gaacgcttgactggtcgttataccaagaaatctgttaaacaccctgaaacaggtgaagtc
atcgttggtccagataccttgatctcagaagacctagcacgtgaaattgttcatgctggt
gtggaagaagtcactatccgctctgtctttacatgtaacactcgccatggtgtctgccgt
cactgttatggtatcaacttggcaactggtgatgcggttgaagtgggtgaagcagtcgga
accatcgctgcccaatctatcggggaacctggtacacagttgaccatgcgtaccttccac
acgggtggggttgcctcaaataccgatatcactcaaggtcttcctcgtgtccaagaaatc
tttgaagcccgcaatccaaaaggggaagcggtcatcactgaggtcaaaggggaagtcaca
gccattgaagaagatgcttctacacggaccaagaaagtctttgttagcggagcaactggt
gagggtgaatacgttgtcccttacactgctcgtatgaaagtcgaagtaggagatcaagtc
tctcgtggtgcggctctgacagaagggtctatccaaccaaaacgtctccttgccgttcgt
gatgtcttgtctgttgaaacttaccttcttgcggaagtacaaaaggtataccgtagccaa
ggggtagaaatcggcgacaaacacatcgaggtaatggttcgtcaaatgatccgtaaagta
cgtgtcatggatccaggagatacagatcttctcatgggtacgcttatggacattacagac
tttacagatgctaataaggatgtccttatctctggtggagttcctgcgactgctcgtcca
gttcttatgggaatcaccaaagcctctcttgaaaccaacagtttcttgtcagctgcttcc
ttccaagaaactactcgtgttcttactgacgcagcgatccgtggtaagaaagaccatctc
cttggacttaaggaaaatgttatcattggtaagattattcctgcaggtacagggatggct
cgttaccgtaacttggaaccacaagcgattaatgaagttgaaattatcgaagaagtgcca
gtaacagatggaacagtcgatgaagttcaaacagctgaagtcgtagaagaataa
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integrated database retrieval system
