Streptomyces chromofuscus: IPT68_02750
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Entry
IPT68_02750 CDS
T07378
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
schf
Streptomyces chromofuscus
Pathway
schf03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
schf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
IPT68_02750
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
schf03400
]
IPT68_02750
Enzymes [BR:
schf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
IPT68_02750
DNA repair and recombination proteins [BR:
schf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
IPT68_02750
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
DNA_ligase_OB_2
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QOV44940
UniProt:
A0A7M2T8E9
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All DBs
Position
626802..627785
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AA seq
327 aa
AA seq
DB search
MTLPLIAPMLATPGTLPPAAQDARWAYETKQDGQRVVVYLPGDGSVVLRARSGEEITAAY
PELLPIGAALGGTAAVLDGEVLALDEQGRADFQLLQSRMGLAHAPARAARRAAQVPVHLV
LFDVMHLAGHSLIGQSYTRRRARLEELGLAGPFWSTPGALVGHGAQALQATREHGLEGLV
CKRLDSVYEPGVRSRAWIKIRNMHGEDVVVGGWQPGKGRLTGLPGAVLVGQRDAAGRLRY
VGSVGTGWSEAERTELAALLREHASDVCPFVPAPAAPGAHWVLPRLVGEVRYSTRTRAGL
LRQPSWLRLRPDLTPGESTADLPDHLA
NT seq
984 nt
NT seq
+upstream
nt +downstream
nt
gtgaccctgccgctgatcgcccccatgctcgccacgcccggcaccctgccgcccgccgcg
caggacgcgcggtgggcgtacgagaccaagcaggacggccagcgcgtggtggtgtatctc
cccggcgacggaagcgtggtgctgcgcgcgaggtccggtgaggagatcaccgccgcctac
ccggaactgctgccgatcggagccgcactcggcggcacggccgcggtgctggacggggag
gtgctggccctggacgaacagggacgcgccgacttccagttgctccagtcccgcatgggt
ctcgcgcacgccccggcgcgtgcggcgcggcgggcggcccaggtgccggtccatctggtg
ctgttcgacgtgatgcacctggccgggcactccctgatcgggcagtcctacacccgccgg
cgcgcccggctggaggagctgggtctcgccggtcccttctggtccacgccgggcgcgctg
gtcggtcatggcgcgcaggccctccaggccacccgcgaacacggtctggagggcctggtc
tgcaagcggctggactcggtgtacgagccgggggtgcgctcccgggcctggatcaagatc
cgcaacatgcatggggaggacgtcgtcgtgggcggctggcagcccggcaaggggcggctg
accggcctgccgggcgcggtgctggtcggccagcgcgacgccgccgggcggctgcggtac
gtcggcagcgtgggcaccggctggagcgaggcggagcgcacggaactcgcggcgctgctg
cgcgagcacgccagcgacgtctgccccttcgtcccggcgccggccgcgccgggcgcgcac
tgggtgctgccccggctggtcggcgaggtccgctacagcacgcgcacccgggccggactg
ctgcgccagccgtcctggctgcggctgcgacccgacctcacgcccggggagtccacggcc
gatctgccggaccacctggcctga
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