Shewanella chilikensis: GII14_21980
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Entry
GII14_21980 CDS
T08813
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
schk
Shewanella chilikensis
Pathway
schk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
schk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GII14_21980 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
schk03021
]
GII14_21980 (rpoB)
03400 DNA repair and recombination proteins [BR:
schk03400
]
GII14_21980 (rpoB)
Enzymes [BR:
schk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GII14_21980 (rpoB)
Transcription machinery [BR:
schk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GII14_21980 (rpoB)
DNA repair and recombination proteins [BR:
schk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GII14_21980 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
QIJ06573
UniProt:
A0A6G7LXP0
LinkDB
All DBs
Position
4862094..4866125
Genome browser
AA seq
1343 aa
AA seq
DB search
MVYSYSEKKRIRKDFGKRPQVLDIPYLLSIQLDSFKKFTDQDPTGERGLEAAFRSVFPIK
SFSGNSELQYVSYKLGEPVFDVKECQIRGVTYSAPLRVKLRMVLYDREAAAGTVKDIKEQ
EVYMGDIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDALFVRIDRRRKLPASIILRALEYSTQDILDIFFERIDFKIKKDSLVMT
LVPERLRGETASYDIKDSEGTVLVEKGRRITARHIRQLEKTNTTELEVPVEYIVGKVAAQ
DYIDPDTGEVLVTANNEISLEDLANLSLAGIKEISTLYINELDHGAYISDTLRIDSTTNR
LEALVEIYRMMRPGEPPTKDAAEALFQNLFFSEERYDLSKVGRMKFNRRLEIDENEGTGV
LTKEDIVAVMKKIIEIRNGFDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVRERL
SLGDLNELMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLT
RERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLSTFARTNSYGFLETPYRKVIDSVV
TDEVEYLSAIEEGRYVIAQANIELDNEGRIVEEQVACRHKGESTFMRASDIQYMDVSPQQ
IISVAASLIPFLEHDDANRALMGANMQRQAVPTLKSEKPLVGTGIERTLAVDSGVVVAAK
RGGVIDYVDASRIVVKVNEDELRPGEAGIDIYNLTKYTRSNQNTCINQRPCCSVGEPVVR
GDVLADGPSTDLGDLALGQNMRVAFMPWNGYNFEDSILISERVAQEDRFTTIHIQELSCI
ARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEE
KLLRAIFGEKASDVKDSSLRVPNSVKGTVIDVQVFTRDGVEKDKRAIEIEEMHIAQARKD
LTEEFKILEEGVLSRARNLLLSAGFSEAKLAELPRKDVLVQVIDDEAKQTELEQLAEQHE
ELKADFDKKFEIKRRKITQGDDLAPGVLKIVKVYLAVKRTIQPGDKMAGRHGNKGVISKI
CPIEDMPYDEQGNPVDIVLNPLGVPSRMNIGQVLEVHLGAAAKGIGNRINAMLEEQRELA
ELRGYIKQVYELGDEVKQRVDIDSFTDDEVLRLAKHLKDGLPTATPAFDGAKEKEIKQML
ELAGLPTSGQLNLFDGRTGNQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPL
GGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTQMYKNIVDGNHQMQPGM
PESFNVLLKEIRSLGINIELDQE
NT seq
4032 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctattctgaaaagaagcgtattcgcaaagacttcggtaagcgtccacag
gtattggacatcccttacctgttgtctattcagttagactcttttaagaagttcaccgat
caagatcctaccggtgagcgtggcctagaggccgccttccgtagcgtttttcccatcaag
agcttttctggtaattcagaactgcagtacgtcagctataagctgggcgagcctgttttt
gatgtgaaagagtgtcaaatccgcggtgtgacatactccgctccactgcgcgttaagctg
cgcatggtgctgtatgatcgtgaagctgccgccggcactgtaaaagatattaaagaacaa
gaagtctatatgggggatatccctctgatgactgaaaacggtacctttgttatcaatggt
actgagcgtgttatcgtatctcagttgcaccgtagcccaggtgtgttcttcgaccacgac
cgtggtaagacacactcctcaggtaaagtgctgtataacgcgcgtattattccttaccgc
ggttcatggctcgacttcgagttcgaccctaaagatgcgttgtttgtacgtatcgaccgt
cgccgtaagttgcctgccagcatcattctgcgtgccctggaatattctactcaggatatc
ctcgacatcttcttcgagcgtattgacttcaagatcaagaaagattctctggtcatgaca
ctggttcctgagcgtctgcgtggcgaaactgccagctatgacatcaaggactcagaaggc
actgtgctggtagagaagggccgtcgtatcactgcccgtcatattcgccaactggaaaaa
accaacaccactgaactggaagtcccggttgagtatattgttggtaaagtcgcggctcag
gactatatcgatcctgacacaggtgaagtactggttactgccaacaacgagatcagcctg
gaagacctggccaatctgtcactggccggtatcaaagagatcagcactctgtacatcaat
gagctggatcacggtgcttatatctctgacaccctgcgtattgactcaaccaccaaccgt
ttggaagcgctggttgaaatctatcgcatgatgcgtcctggcgagccaccaaccaaggat
gcagccgaagctctgttccagaatctgttcttcagcgaagagcgctatgacctgtctaaa
gtgggccggatgaagttcaaccgtcgtctcgaaatcgacgagaacgaaggtaccggtgta
ctgaccaaagaagacatagttgccgtaatgaagaagatcatcgaaatccgtaacggtttt
gatgaagtcgatgatatcgaccacctgggtaaccgtcgtatccgtagcgttggcgaaatg
gccgagaaccagttccgtgtcggtctggtacgtgttgagcgcgcagtacgtgaacgtctg
tctctgggcgatctgaacgagctgatgcctcaggatctgatcaacgccaagccaatttct
gccgcagtgaaggagttcttcggttcttctcagctgtcgcagtttatggatcagaacaac
ccgctgtcagaagtgactcacaagcgccgtatttcggctcttggtcctggcggtttgacc
cgtgagcgtgccggcttcgaagttcgagacgtgcacccaactcactatggtcgtctgtgt
ccaattgagactcctgaaggtccaaacattggtttgatcaactcactgtctacctttgcc
cgtaccaactcatacggcttcctggaaacaccttatcgcaaggtgatcgacagtgtggtt
accgatgaagtggaatatctgtcagccatcgaagaaggtcgctatgtgattgcacaggcc
aacatcgagctcgacaacgaaggccgcattgtggaagagcaggttgcctgtcgccacaag
ggtgaatctacctttatgcgcgcttccgatatccagtatatggacgtatctccgcagcag
atcatctctgtggcggcatctttgatcccattccttgagcacgacgacgctaaccgtgca
ttgatgggtgcaaacatgcaacgtcaggcagtaccaacactcaagtcagagaagcctctg
gtgggtacaggtattgaacgtacactggctgttgactcaggcgtggttgtggctgccaaa
cgtggcggcgtgatcgactatgttgatgccagccgcatcgtggttaaggttaacgaagat
gagctgcgcccaggcgaagccggtatcgatatctacaacctgaccaagtacactcgctcc
aaccagaacacctgcatcaaccagcgtccatgctgtagcgtaggtgagcctgtggtgcgt
ggtgacgtgctggccgatggtccgtcaaccgacttgggcgacctggctctgggtcagaac
atgcgcgtggccttcatgccatggaacggttacaactttgaggattccatcctcatctcc
gagcgcgtagcgcaggaagaccgtttcaccactatccacattcaggaactgtcctgtatt
gcccgtgacaccaagctgggtagcgaagagatcactgccgacatccctaacgtaggtgag
tctgcactgagcaagctggatgaatccggtatcgtttacatcggcgccgaagttaaaggc
ggtgacattctggttggtaaggtaacgcctaagggtgaaactcagctgactccggaagag
aaactgctgcgggctattttcggtgagaaagcgtctgacgttaaagacagctctctgcgt
gtacctaactcagtgaagggtaccgttatcgacgtgcaagtcttcacccgtgacggtgtt
gaaaaagacaagcgcgccatcgaaatcgaagagatgcacattgctcaagcccgtaaggac
ttgactgaagagttcaagatccttgaagaaggtgtactgagccgtgcccgtaacctgctg
ctgagcgccggtttcagtgaagccaaattggccgaactgccacgcaaagacgtattggtt
caggttatcgacgatgaagccaagcaaaccgaactggaacagctggctgaacagcacgaa
gagctgaaagccgactttgacaagaagtttgaaatcaagcgtcgcaagatcacccaaggt
gatgatctggctccaggcgtactgaagatcgttaaggtttacctggcggttaagcgtacc
atccagcctggtgataagatggccggtcgtcacggtaacaagggtgtgatctccaagatc
tgtcctatcgaagatatgccatacgacgagcagggtaaccctgtcgacatcgtactgaac
cctctgggtgtaccttcgcggatgaacataggtcaggtactggaagttcacttgggtgct
gcggctaaaggtattggtaatcgcatcaatgccatgctggaagaacagcgtgagctggcc
gaactgcgtggctacatcaaacaggtctatgaactgggcgatgaagtgaagcagcgcgtg
gatatcgattcatttaccgatgatgaagttctgcgtctggccaaacacctgaaggatggt
ctgccaacggcaaccccagccttcgacggtgccaaagaaaaagagatcaagcagatgctt
gagctcgcaggtctgccgacttccggtcagctgaatctgtttgatggtcgtaccggtaac
cagttcgagcgtcctgtgaccgtaggttacatgtacatgctcaaactgaaccacttggtt
gatgacaagatgcacgcccgttctaccggttcgtacagcttggttactcagcagcctctg
ggcggtaaagctcagttcggtggtcagcgtttcggtgagatggaagtgtgggccctggag
gcatacggtgctgcgtatactctgcaggaaatgctcacagtgaaatcggatgacgttaac
ggtcgtactcagatgtacaagaacatcgttgacggtaaccatcagatgcagccaggaatg
ccagagtccttcaacgtattgctgaaggagatccgttctctcggtatcaacatcgagttg
gatcaagagtaa
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integrated database retrieval system
