Siniperca chuatsi (mandarin fish): 122864026
Help
Entry
122864026 CDS
T08948
Symbol
col9a2
Name
(RefSeq) collagen alpha-2(IX) chain isoform X1
KO
K08131
collagen type IX alpha
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu04510
Focal adhesion
schu04512
ECM-receptor interaction
schu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122864026 (col9a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
122864026 (col9a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
122864026 (col9a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
schu00535
]
122864026 (col9a2)
Proteoglycans [BR:
schu00535
]
Extracellular matrix (ECM) proteoglycans
Others
122864026 (col9a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
122864026
NCBI-ProteinID:
XP_044026966
LinkDB
All DBs
Position
LG17:complement(19185844..19202781)
Genome browser
AA seq
691 aa
AA seq
DB search
MAALSALLKTWVILQTLCLALAQVRGPPGPQGQPGPPGPSGTPGSDGIDGDKGPPGPPGP
PGQKGEPGEPGPDGAPGENGIDGLIGAKGDRGPIGSPGPKGQPGPGGEPGPPGPGLPGLA
GAPGPIGLPGEIGPNGPKGILGPPGPPGLPGPPGKPGPPGKFIGGEEGSADFQCPLNCPA
GPKGPQGLQGVKGHKGRAGVLGESGSIGKMGPKGEVGISGEQGIPGPPGPMGLRGYPGMM
GPKGEAGPRGYKGINGPVGIPGPPGEEGPQGPPGEAGDKGDKGSRGIQGPQGAVGKKGEN
GLPGIDGKDGTPGIPGIKGSLGQAGMPGPPGPQGAAGLPGSPGSKGGPGSKGEPGPRGHI
GMPGASGPLGEPGLPGEPGMEGVPGPKGDRGQRGEVGPQGVVGKPGNKGERGPIGVPGAQ
GLSGTKGDKGFQGKVGSKGDIGDPGVEGLAGEKGEKGLSGEPGPKGQQGIRGDSGHNGPT
GDPGKPGDQGPPGLPGPRGLNGERGVPGMPGIQGSSGRDASDQHIIEVVLKMLQERLAAV
AVSAKRAVLGGAGVMGPPGPPGPAGSPGPQGPHGLPGARGIPGMIGGPGQIGNTGLKGKR
GAKGERGDPGKPHPGPPGPPGIQGPPGVDGVARDGRPGERGPQGAAGEAGRPGKAGSAGL
PGFCEAAMCLAASAYTSPRLQEAGTIKGPNV
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggctgctctctctgccttgctgaagacctgggtaatactgcagaccttgtgcctggct
ctggcccaagtgaggggtccacctggacctcagggccagcctggcccaccaggcccctct
ggcacccctgggtccgatggcattgatggagataaaggacctcctgggccccctggtcca
ccaggacaaaagggagagccgggagagccaggtcctgatggagcaccaggagagaatggc
attgatggtttgattggagcaaagggtgatcgaggtcctatcgggagccctggccctaag
ggtcaacctggaccaggtggtgaacctggacctcctggacccggccttccaggacttgct
ggcgctccagggccaattggtcttccaggtgaaattggaccaaatggaccaaagggtata
ttgggaccacctggacctccaggacttcctggacctcctggcaagccaggtcctccaggg
aagttcattggtggagaagagggcagtgcagacttccagtgtcctcttaactgtccagca
ggacctaaaggcccccagggactgcagggcgtcaagggacacaaaggacgtgctggtgtt
ctcggagagtctggtagcataggaaaaatgggtcccaagggagaagttggcatctctggg
gaacagggcatcccaggacctccgggtccgatgggtctgaggggttatccgggaatgatg
ggtcctaaaggggaagcagggcctcgtggttacaagggcatcaacgggcctgtaggaatt
cctgggcctcctggtgaggagggccctcagggaccgcctggagaggcaggagacaaggga
gacaaaggcagccgaggtatccagggcccacagggtgcggttggcaaaaagggagagaat
ggtctgccgggtattgatggaaaagacggcacacctggtattcctggaatcaagggcagc
cttggccaggctgggatgcctggtcctcctggccctcagggagcagcgggattgcctggc
agtcctgggtcaaagggagggcctggatctaagggcgagcctggacctaggggtcatatt
ggcatgcctggtgcctccggacctctgggtgagcctggtcttcctggtgagcctggtatg
gaaggagttcccggacccaagggtgacagaggccagcggggagaagttgggccacaagga
gtcgtcggcaagcctggaaacaaaggagagagaggaccaattggtgttccaggtgcccag
ggtcttagtggaaccaagggagacaagggcttccaaggaaaggtcgggtcaaaaggagac
attggtgaccccggtgttgagggattggctggcgagaaaggcgaaaagggtttgtctggt
gaacctgggcccaaaggacagcaaggaatcaggggtgactccgggcacaatggacccact
ggagaccctggtaaacctggagaccagggaccaccaggactgcctggtcccaggggactc
aatggagagcgaggagtacccggcatgccaggcattcagggctcatcaggacgggatgca
tctgaccagcatattattgaagtggtgttgaagatgttgcaggagaggctagcagcagtg
gcagtgagtgccaaaagggctgtgcttggtggagcaggtgtaatgggacctcctgggcct
cctggacctgctgggtcacctggccctcaggggccacatggcttacctggtgcccgtggc
attcctggcatgattggaggacctggacagattggaaacacaggacttaaaggaaagaga
ggggcaaagggagaaagaggagatcccggtaaaccccatccaggaccaccaggaccccca
ggaatacaaggtcctcctggtgttgatggtgtggctcgggacggcaggcccggcgagaga
ggacctcagggagcagctggagaggccggtcgccccggtaaggcaggttcggcaggcctc
ccaggcttttgcgaggcagcgatgtgtctggctgcgtcagcgtacacctccccgagacta
caggaggcgggaacaatcaaaggacctaatgtttag
DBGET
integrated database retrieval system
