Siniperca chuatsi (mandarin fish): 122872280
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Entry
122872280 CDS
T08948
Symbol
scn1lab
Name
(RefSeq) sodium channel, voltage-gated, type I like, alpha b isoform X1
KO
K04834
voltage-gated sodium channel type II alpha
Organism
schu
Siniperca chuatsi (mandarin fish)
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
schu04040
]
122872280 (scn1lab)
Ion channels [BR:
schu04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
122872280 (scn1lab)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
IQ_SCN5A_C
PKD_channel
GPHH
Spem1
IQ
ATP-synt_B
New_glue
Motif
Other DBs
NCBI-GeneID:
122872280
NCBI-ProteinID:
XP_044044213
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All DBs
Position
LG24:complement(14555625..14596627)
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AA seq
2041 aa
AA seq
DB search
MAQLLVPPGPESFVPFVPESLAAIERRIAEEEARRPRAERRSDSNDENGPKPNSDLEAGK
SLPFIYGETPPDLVSTPLEDIDPYYSNQKTFIVLNRGKAIFRFNATPALYILSSFNPLRR
IAIRILVHSMFSMLIMFTILTNCAFMTLSNPPEWAKNVEYTFTGIYTFESLIKILARGFC
VGKFTFLRDPWNWLDFSVILMAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGA
LIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRQKCVRLPIVNATNSSNITADDTMFF
NNTLLDINTTFVQNTTENSFNWTEYISDESNYYYLPGRRDALLCGNGSGTGLCPEGFTCI
KAGRNPDYGYTSFDTFSWAFLSLFRLMTQDYWENLYQQTLRAAGKPYMIFFVLVIFLGSF
YLVNLILAVVAMAYDEQNQATIEEAQQKEEEFQAMLEQLKRQQEEAQVAAAAATESGEYS
GRGGPTSESSSGTSKLSSKSAKERRNRRKKRKQREEEEERGARDKFHKSESEDSIKRSSF
RFSIDANRLSYEKRCSSPNQSLLSIRGSLFSPRRNSRASLFSFRGRARDMGSENDFADDE
HSTFEESDSRRGSLFLPRRLERRCSAISQTSLGAPRIMLPANGKMHCTVDCNGVVSLVGG
TSVTTSPVGLLLPEGTTTDTELKKRRSGFHQPSMDYLDEPGGRQRAMSVASILTNTMEEL
EESRQKCPPCWYRFANIGLIWDCCPAWLKIKAVVSTVVMDPFVDLAITICIVLNTLFMAM
EHYPMTKEFDNVLSVGNLVFTGIFTAEMCFKIIALDPYYYFQEGWNIFDGIIVSLSLMEL
GLANVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVV
GMQLFGKSYKECVCKISNDCQLPRWHMHDFFHSFLIVFRVLCGEWIETMWDCMEVAGQTM
CLIVFMMVMVIGNLVVLNLFLALLLSSFSADNLAATDDDSEMNNLQIAVGRIQRGIAFVK
AAVRRFLQSLCFGGAGKGSGLAEESKPLDELHSNGKGNCISNHTSVEITKDPSGVYTTEG
NGRPGGGLEVGLGVGGDTTGKYPMEECDYMSFIHNPSLTVTVPIAVGESDFENLNTEDFS
SDSSDVEGSKEVLQCNFVLSSSSSTMQKLDAEPQPLSSSEGSTVDIRPPGDGVDSVELEP
EESLDPEACFTEGCVSRFQCCQINEEGGKYKTWWTLRKTCFIIVEHNWFESFIIFMILLS
SGALAFEDIYIEQRRTIKTMLEYADKVFTYIFILEMLLKWVAYGFVKYFTNAWCWLDFLI
VDVSLVSLVANALGYSELTAIKSLRTLRALRPLRALSRFEGMRVVVNALLGAIPSIMNVL
LVCLIFWLIFSIMGVNLFAGKYYYCVNTTTGDIFPIDVVNNKTECLNLVNDSARWKNVKI
NFDNVGAGYLALLQVATFKGWMDIMYAAVDSRNVEDQPNYEVNLYMYLYFVIFIIFGSFF
TLNLFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPTNTFQGC
VFDCITKQAFDIVIMILICLNMVTMMVETDDQTPEMDKILYWINLVFIVLFTGECVLKMI
SLRHYYFTIGWNIFDFVVVILSIVGMFLSEVIEKYFVSPTLFRVIRLARIGRILRLIKGA
KGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKREAGIDDMFNFETFGNS
MICLFQITTSAGWDSLLAPILNKREPDCDSQMEHPGNYYKGNCGNPSVGIFFFVSYIIIC
FLIVVNMYIAVILENFSVATEESAEPLSEDDFEMFYEVWERFDPDATQFMEYSKLSDFAD
ALDPPLRMPKPNMTHLISMDLPMVSGERIHCLDILFAFTKRVLGEGGEMDVLRGQMEERF
MASNPSKVSYEPITTTLRRKQEDMSAVIIQRAFRRYMMRLAMKKASALYKEKLKEGIRDP
DKDVMVISKFNENSTSDKTDMTPSTASPPSYNSVTKSDKDKYEKENREKENKGKDLKDRK
K
NT seq
6126 nt
NT seq
+upstream
nt +downstream
nt
atggcacagctgcttgtaccgcccggacctgaaagcttcgtgcccttcgtccccgagtcg
ctggccgccatcgagaggcgcatcgccgaggaggaggcccggagaccacgggcggagcgc
cgcagcgacagcaacgatgaaaatgggcccaagcccaacagtgacctggaggcggggaaa
tctctccccttcatctatggggagaccccccccgacttggtgtccacccctctggaggac
attgacccctactacagcaatcagaagaccttcatagtattgaatcgcgggaaggcaatc
ttccgtttcaacgccactcctgccttgtacatcttaagctccttcaaccctctaaggagg
atagctattagaattttagtacactcgatgttcagcatgttgatcatgttcaccatcctg
accaactgtgctttcatgacgctcagtaatcccccggaatgggccaagaatgtagagtac
acattcacagggatttacaccttcgagtcccttatcaagatcctggccaggggcttctgt
gtggggaagttcacctttctgcgggatccgtggaactggctggatttcagtgttattctc
atggcatatgtcacagagtttgtggacctgggcaatgtctcagcactgcgaaccttcagg
gttctgcgagccctgaaaactatatcagtcatcccaggattgaagaccatcgttggcgca
ctgatccagtcggtaaaaaagctgtcggatgtcatgatcctgaccgtgttctgcctcagc
gtcttcgccctcatcggcctgcagctctttatgggcaacctgaggcagaagtgtgtgcgt
ttgccaatcgtcaacgccaccaacagcagcaacatcaccgctgatgacactatgtttttc
aacaacaccctgctggatatcaacaccacgtttgtgcagaacaccacggagaactctttc
aactggacagagtacatcagtgatgagagtaattactattacctccctggccgtagggat
gctctgctctgcgggaatggcagtggcactgggctctgcccagagggctttacatgtata
aaagctggtcgtaatccagactatggctacaccagcttcgacaccttcagctgggcgttc
ctctccctgttccgactcatgacccaggactactgggaaaacctctaccagcagactttg
cgtgcggcgggaaaaccctacatgatcttcttcgtgctggtgatcttcctgggctccttt
tacctggtcaacctgatcttggccgtggtggccatggcttatgacgagcaaaaccaggca
accatcgaggaggctcagcagaaggaggaggagttccaggccatgctggagcagctcaag
agacagcaggaggaggcacaggttgccgcggcagcagccacggagagtggagagtacagc
gggagagggggccccacctctgagtcctcctcagggacatctaagctcagctcgaaaagt
gccaaggagcgacgcaacaggcggaagaagaggaagcagagggaggaggaggaggagagg
ggggcccgtgacaagttccacaagtctgagtccgaggacagcatcaagagatccagcttc
cgtttctccattgatgccaacagactttcttatgagaagagatgctcctcacccaaccag
tctctcctcagtattcgtggatccctcttctcacctcggaggaacagccgtgccagcctg
ttcagcttccgtggccgggcccgcgacatgggctccgagaatgactttgctgatgacgag
cacagcaccttcgaggagagcgacagccgtcggggttccctgttcctgccgcgccgcctc
gagcgccgttgcagcgctatcagccagaccagccttggggcgccccggatcatgctgccc
gccaacggcaagatgcactgcacagtagactgtaatggtgtggtgtcgctggttggtgga
acttctgtaacaacctcccctgtaggtctcctgctgcctgaggggacaactacagatact
gagcttaagaaacgccggtcaggttttcaccagccatccatggattatttagatgaacca
gggggcaggcagagagccatgagtgtggccagtatcctcaccaacaccatggaagagctt
gaagagtcaagacagaaatgccccccctgctggtacagatttgccaacatcggtctgatc
tgggattgttgccccgcatggctgaaaatcaaggcagtcgtcagcacggtggtcatggac
ccatttgtggatctggccatcacaatttgcattgtcctcaacacccttttcatggccatg
gagcattaccccatgactaaagaattcgataatgtcctctctgttggaaacctggtgttc
acaggcatcttcacagcagagatgtgcttcaagatcatcgccctggatccctactattac
ttccaggagggttggaacatctttgacggcatcattgttagcctgagtctgatggagctt
ggcttggccaacgtagaaggcctgtctgttctcaggtcctttagattgctgagagtcttc
aagctggccaagtcatggcccactttgaatatgctgatcaagatcattggtaactcagtg
ggtgctctggggaacttgacactggtgctggccatcatcgtcttcatctttgccgtggtg
ggcatgcagctgtttggcaagagctacaaggagtgcgtgtgtaagatttctaatgactgt
caactgccccgctggcacatgcatgatttcttccactccttcctcatcgtgttccgggtg
ctgtgcggagagtggatagagaccatgtgggactgcatggaggtggctggacagaccatg
tgcctgatcgtcttcatgatggtcatggtcattggaaacctggtggttctaaacctgttc
ctggctctcctcctgagctcattcagcgctgacaaccttgcagcaactgacgatgacagt
gagatgaacaacctgcagattgctgtgggccggatccagcggggcatcgcatttgtcaaa
gctgcggtgcgacggttccttcagagcctctgctttggcggggccggtaagggctctggt
ctggctgaggagagcaaacctcttgatgaactgcacagcaatggcaagggcaactgcatc
tccaaccacacttcagtggagatcaccaaagaccccagtggggtgtacacgacagagggc
aatggacggccaggaggagggctggaggttgggcttggggttggtggggacactacaggg
aagtacccaatggaggaatgtgactacatgtcatttattcataaccccagcctgacagtc
acagtgcccatcgctgtgggcgagtcagactttgagaacctaaacacagaagatttcagc
agtgactcgtcagatgtggagggcagcaaagaggtactgcagtgtaactttgtactctca
tcttcttcttcgacgatgcagaagctcgatgcagagccccagcctctgagctcatcggag
gggagcacagtcgatattcgccccccaggagatggggtggattcagtggagctggagcca
gaggagtcactggacccagaggcctgcttcacagagggctgtgtgagtaggttccagtgt
tgccagatcaacgaggagggaggcaaatataagacctggtggacactcaggaaaacctgc
tttatcatagtggagcacaactggtttgaatccttcatcatattcatgatcctgctcagc
agtggagcactggcgtttgaggacatttacatcgagcagcggaggaccatcaaaacaatg
ctggagtacgcagacaaggtcttcacttacatcttcatcctagaaatgctgttgaagtgg
gtagcatacggctttgtcaagtacttcaccaacgcctggtgctggctcgacttcctcatt
gtagatgtgtccctggtcagccttgtagccaatgctctgggctactctgagcttaccgcc
ataaaatctctgaggacactgcgagccctccggcccctgagggccctgtctcggtttgag
ggcatgagggttgtggtgaacgcgttgctgggggccatcccctccatcatgaacgtgctg
ttggtctgcctcatcttctggctcatcttcagcatcatgggcgtcaacctgtttgcaggg
aagtactattactgcgtcaacaccaccacaggcgatatcttccccatcgacgttgtcaac
aacaagactgagtgcctgaatttggtcaacgacagcgcccgctggaagaatgtcaaaatc
aactttgacaatgtcggggccggctatctggctctgttgcaagtggcaacatttaagggt
tggatggacatcatgtatgcagctgtggactcacgaaatgtggaagaccagcctaattat
gaagtgaacttgtacatgtacctctactttgtcatcttcatcatcttcggctccttcttc
accctcaacctgttcatcggtgtcatcatcgacaatttcaaccagcagaagaagaagttt
ggaggtcaggacatcttcatgacagaagaacagaagaaatactacaatgccatgaagaag
ctgggttccaagaaaccacaaaaacctatacctcggccaacaaatacatttcaaggctgc
gtgtttgactgcatcacaaagcaggccttcgacatcgtgatcatgatcctcatctgcctt
aacatggtgaccatgatggtggagacggacgaccagacaccggagatggacaaaatcctc
tactggatcaacctggtcttcatcgtgctcttcactggggagtgtgtgcttaagatgatc
tctctgcgtcactattactttaccattggttggaatatatttgactttgtggtggtgatc
ctgtccatcgtaggtatgtttttatctgaagttatcgagaagtactttgtgtccccgaca
ctgttccgagtgatccgtctggccaggataggccgcatccttcgccttatcaaaggtgcc
aaaggcatccggacgcttctctttgccttgatgatgtcactccctgccctgttcaacatc
ggccttctcctcttcctggtcatgttcatctacgcgatctttggcatgtccaactttgcc
tacgtcaagcgagaggcaggaatcgatgacatgttcaattttgaaaccttcgggaacagt
atgatctgtttgtttcagattaccacctcagccgggtgggacagcctgctggcgcccata
ctgaacaagagggagcctgactgtgacagccagatggagcacccgggcaactattacaaa
ggcaactgtggcaacccatcagtgggcatctttttcttcgtcagctacatcatcatctgc
ttcctcattgtggtcaacatgtacattgccgtcatcctggagaacttcagcgtggccaca
gaggagagcgccgaaccgctgagcgaggatgactttgagatgttctatgaagtgtgggag
cgctttgatcctgatgccactcagttcatggagtacagcaagctctctgactttgcagat
gctctagatccaccgctgcgcatgcccaagcctaatatgacccacctcatctccatggac
ctgccaatggtgagtggcgagcgcatccactgcctcgacatcttgttcgccttcaccaag
cgagtgttgggtgagggtggcgagatggatgttttacgcgggcagatggaggagcgcttc
atggcctctaacccctctaaggtgtcttacgagcccatcaccaccaccctccgccgcaaa
caggaggacatgtcggccgtaatcatccagagagctttccgccgctacatgatgcgcctg
gccatgaagaaggcctctgccctctacaaggagaagctgaaggagggcatccgcgaccct
gacaaggacgtgatggtcatcagcaagttcaatgagaactccacctcggacaaaacggac
atgaccccctccacagcctccccgccctcctacaacagtgtgacaaagtcggacaaggac
aaatacgagaaagaaaatagggaaaaagaaaacaaagggaaagacttgaaagaccgaaag
aaatag
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