Siniperca chuatsi (mandarin fish): 122875172
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Entry
122875172 CDS
T08948
Name
(RefSeq) LOW QUALITY PROTEIN: cyclic nucleotide-gated cation channel beta-1-like
KO
K04952
cyclic nucleotide gated channel beta 1
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu04744
Phototransduction
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09150 Organismal Systems
09157 Sensory system
04744 Phototransduction
122875172
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
schu04040
]
122875172
Ion channels [BR:
schu04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
122875172
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
cNMP_binding
Motif
Other DBs
NCBI-GeneID:
122875172
NCBI-ProteinID:
XP_044049959
LinkDB
All DBs
Position
LG4:complement(21753221..21781214)
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AA seq
1650 aa
AA seq
DB search
MFNWVVKVVPQLPEAPGTDEAAKTPAADHPKNKVKSSPLKNTDDVSEESQAQAGVLGWLS
NGFVSTLPQPAGSPRLSRANSDAKSGEDGERSGVIGWVTQGLTKVLPQPDEKYKETNDDN
EEHTEVYEVATMPDFDPLPHIPVVEIVSDDEVSEIDSLTSQFPPKVVNWIKQMVPQPVIL
PPGAVPIEPSTKSSRSSLDKILSPPPESLSGISLDTDSKASGVVGWFVSGLGLKMPQPAI
PPKDEAEGAAEVLQKASSKLKPDMVLEDVESDNEGQQKHEDQSKAAAPSTSLTPPSPTAH
QQQEVTQQTQSNSLQSQKCDDHNPEPEPSESLTKISQEDAETQTGRWTPFIESIKKEAED
VALATMEERLLQERVEMTRMAEEVARQTAEMAIRQMASEGQSIKLSLGSQDLLEEPEAEL
PVPQEEESEVDHSKVAEEEQSLSEEKEETEEPTIKEPEPTEEAEPQQTSPSPPPSPEPVK
TSEPEPEPEPEPEPEPEPELEPESETKTQEADSEAEPVTKQPQKAEKDSESTNADKAGEK
EEEATGDGCGAPVSCDALKSCLMRIPHTSECLGNINAFFKENGISPPKIPSMPKLPTQLS
DVTKYLPSLPPELRQEFSQIRLTQVPRNIVQTLTELLPKSSEGSVGPSLSSLSQSFSNIP
QKLSQFPSQTQQYFLNVRNRLNSLMPQDAXEQQQQQKQKQDKNQQEVELNWLVRHSPLPP
HPPQLRSRSPSPSSPNSSALELPNVPSYPRLPPIVSPPSKQIHSPSHQLSGLSNPAFFIE
DDSDISAIRPAESSSLSLRPAVNVEDVDSDHETGGAGGGEGVGEEGSNIPQVLTPQDPKL
TTLTVPVTPSGGRQSKADKDETTHMHSLYAFMANDFTREKRKVTSVGYVIWATSRCKLLC
WQVESFSGRNRRTIWTKIRRLHSQSEDDDDEASIPVRAWPSQSSLHSTDDILKERPTSSA
SQTSTVVNERLQELVKMFKERTEKAKEKLIDPDSSDEDSIIPSPPQASAPQPAPGAKPVD
GGEKEAQAGLSGGGGGGVEESGAEEEQSSPCCKVKTPRWIRACMHYRFPASIDPFTNLMY
VLWMLLVSLAWNWNAWFIPVRWAFPYQTPDNIYYWLLTDYLCDLIYILDITIFQPRLQFV
RRGDIVCDKKEMRKNYMKTKRFKFDVASLVPLELFYFKTGINPLLRLPRLLKINSFFEFN
ERLEAILTKAYIYRVIRTTTYLLYCLHCNACLYYWGSAFMGIGSTKWVYNGEGNSYIRCY
YFAVKTLITIGGLPEPTTLFETIFQLINYFIGVFAFSIMIGQMRDVVGAATAGQTYYRTC
MDNTVKYMSSYHIPKDVQNRVKTWYNYTWQSQGMLDELELLTQLPDKMRLDIAVDVNYSI
VSKVPLFQGCDRQMIFDMLKSLRSVVYLPGDYVCKKGEVGREMYIIKAGEVQVVGGPDGK
TVFVTLGAGSVFGEISLLAVGGGNRRTANVIAHGFANLFILDKKDLNEILVHYPESKKLL
RKKARKMLTKGKKPEQKEEAKGPPQVPAAPVRPETPKLLRAALEMTERSAGLKGALAKVK
EKTNKSSISLQPSISSSLLPPSPTSSSGPDRDVDTPSPISASSATIHSASGCRKNSCHGN
ADEMPTMDQREEGVSEVKGNEGGKRKEKKL
NT seq
4953 nt
NT seq
+upstream
nt +downstream
nt
atgtttaactgggtggtgaaagtggtcccccaactccctgaagctcccgggaccgatgaa
gctgctaagacccctgctgctgaccaccccaaaaataaagtgaagagttctccactgaaa
aacacagacgacgtttcagaggaaagccaggcccaggctggagttttaggctggctgtct
aatgggttcgtcagcaccctgcctcaacctgctggctcccctcgactcagcagggccaac
tctgacgccaaatcaggagaggacggagaaaggtctggagtcataggctgggtcactcag
ggtctgaccaaggtgttgcctcagcccgatgagaagtacaaagagactaacgacgacaac
gaagaacacactgaggtctatgaagtagcaacaatgccagattttgatccccttccacac
atcccggtggtggagatagtgtcagatgatgaagtgtcggagatagacagtctgacctct
caattcccacccaaggtcgtgaactggataaagcagatggtccctcagccagttatactg
ccccctggtgccgtacccatagaaccatcaaccaagtcctcccgctcctctctggacaaa
attttgtcgccaccacctgaatctctcagtggaatctcactggatactgacagcaaggcc
tcgggcgtggttggctggttcgtgtcaggactgggcctgaagatgcctcagcctgccatt
ccacccaaagatgaagctgagggtgcagctgaagttctacagaaagcttcatccaaactc
aaacctgacatggtactagaagacgtagagtcagacaacgagggccagcagaaacatgaa
gatcagtccaaagctgcagcaccatccacatcactgactccaccatcaccgacagcacac
caacagcaggaagtgacacagcagacgcagtccaattcactgcagtctcagaagtgtgat
gaccacaacccagaaccagaaccgtctgagagtttgacaaaaatatctcaagaagatgct
gagacccagacgggccgctggacgccgttcattgaaagcatcaagaaggaggcagaagat
gtagctttggctaccatggaggaacgtctgctgcaggagcgtgtggagatgacacgtatg
gccgaagaggtggccaggcagacagctgagatggccattagacagatggccagtgaggga
cagtccatcaaactctcactgggcagtcaagatctgctggaggagcctgaagcagagctg
ccagtgccacaagaagaggagagcgaagtggatcacagtaaagtcgcagaagaggaacag
agcctttctgaggagaaggaggagactgaggaacctaccattaaggaaccagagccaacg
gaggaagcagagccacagcagacctccccctctccacctccaagtcctgaaccagttaag
acctctgagccagagccggagccagagccggagccggagccggagcctgaaccagaacta
gaaccagaatcagagaccaagacccaggaagctgattcagaagctgagcctgtaaccaag
cagccgcagaaagcagagaaagacagtgaaagcaccaatgctgacaaagctggtgaaaaa
gaggaggaagctactggggacggctgtggtgctccagtcagctgtgatgcattaaagagc
tgcctgatgcgcattcctcacacctccgagtgcctcggcaacatcaacgcgttcttcaaa
gagaacggcatctcccctcccaaaataccctccatgcctaagctacctacccagctctct
gacgttaccaagtacttaccctccctaccccctgaattgcgccaagagttctcccagatc
cgactcacgcaggtcccccgaaatatcgtccagactctgactgagcttttgcccaaaagc
tcagagggttcagtcggccccagtctgtccagtctttcccagagcttttcaaacatccca
cagaagctctcccagtttcccagccaaacgcagcagtacttcctcaatgtccggaaccgc
ctcaacagccttatgcctcaagatgcctaagaacaacaacaacagcaaaaacagaagcaa
gacaagaatcagcaagaagttgaactgaactggctcgtccgacactcccctctccctcct
caccctcctcagctccggtcccgctccccatctccatcctcccccaacagtagcgccctc
gaattgcccaatgtgccatcctacccacgcctgccgccaattgtcagccccccatcgaag
cagatccactcaccgtcccaccagctgtcaggtctctctaacccagcgttcttcattgaa
gatgactcagacatttcagcaataagacccgcagagagctctagcctcagccttcgtcca
gctgtcaatgtagaggatgtcgactcagaccacgagacaggaggagcaggagggggagaa
ggagtgggggaagaagggagcaatattccccaagtcctcaccccccaggaccccaaactt
acaaccctcactgtccctgtgacgccttctggaggtcgtcaaagtaaagcagataaagat
gaaacaacgcatatgcatagcttatatgcattcatggcaaatgatttcacaagagagaaa
cgcaaagtaacatcagtaggatatgttatttgggctacgtcaaggtgcaagcttctctgt
tggcaagtggagagttttagtggaaggaatcgtaggactatctggacaaagattaggagg
ctgcactctcaaagtgaagatgatgatgatgaagcaagcatccctgtcagagcctggccc
agccagtccagcctgcacagcacagatgacatactgaaagagcgtccaacatcttcagcc
agtcagaccagtacagtggtcaacgagcgtcttcaggagctggtcaagatgtttaaagag
agaacggagaaggcaaaggagaaactcattgaccctgacagctcagatgaagacagcatc
atcccctctcctcctcaggcttcagctcctcagcctgctcctggagctaagccagtggac
gggggagagaaggaggcacaagcaggtctatcaggaggaggtggaggaggagtggaggag
agtggggcagaggaggagcagtctagcccctgctgcaaggtgaaaactcctcggtggata
cgagcctgtatgcactaccgcttccctgccagcatcgaccctttcaccaatctaatgtac
gtgctgtggatgttattagtctctctggcctggaactggaacgcctggttcatcccagtg
cgctgggccttcccctaccagactccagacaatatttactactggctgctgaccgactac
ctgtgtgacctcatttacatcctggacatcaccatcttccagccgcgcctgcagtttgtt
cgcagaggggacatagtgtgtgacaaaaaagagatgagaaagaattacatgaaaacaaaa
cgcttcaaatttgatgtagccagcctggttcccctggagctcttctatttcaaaactggc
atcaaccctctgcttcgcttacccaggctgctgaagatcaactccttctttgagttcaac
gagcgtctagaggccatcttgaccaaagcctacatctacagggtgatccgcaccaccacc
tatcttctttactgtctccactgtaacgcctgtctatactactggggctctgccttcatg
ggaataggatcaaccaagtgggtgtacaatggcgaaggcaacagttacattcgctgttac
tactttgcggtgaagaccctgatcaccattggtggtctgccagagcccaccaccctcttt
gagactatcttccaactcatcaactattttattggagtctttgcattctctatcatgatt
ggacagatgcgtgacgtggttggtgcagccacagcaggtcagacctactaccgcacatgt
atggacaacactgttaaatacatgtcctcctatcacatccccaaagacgtccagaaccgt
gtcaaaacctggtacaactacacctggcaatcacaaggcatgctggatgagctggagctg
ttgactcagttgccagataaaatgcgtctggacattgctgtagacgtcaactactccatc
gtcagcaaagtccctctttttcagggttgtgacagacaaatgatctttgacatgctgaaa
agcctacgctctgttgtctacctgcctggggattatgtctgcaaaaagggcgaggtgggt
cgggagatgtacatcataaaggcaggggaggtgcaggtggttggaggaccggatgggaaa
acggtgtttgtcactctcggagcaggatcagtctttggagagatcagtttgcttgcagta
ggtgggggtaacaggcgcacagcaaatgtaatcgcccatggctttgccaatctcttcatc
ctggacaagaaagacctgaatgagatcctggtccactaccccgagtccaagaaactgctc
cgcaagaaggccaggaagatgcttaccaagggaaagaaacctgagcaaaaagaagaggct
aagggtccccctcaggtcccagcagcccctgttaggccggagacccccaaactgctgaga
gcagccctggagatgacagagagatccgctggacttaaaggagctctggctaaagtcaaa
gagaagaccaacaagtccagcatctcattacagccctccatctcctcctccctgcttcct
ccatctcccacctccagctccggacctgacagggacgtggacacgccatcacccatctct
gcgagctccgcaacgattcactctgcttctggttgccgcaaaaacagctgccacggcaac
gcagacgaaatgcccaccatggaccaaagagaggaaggtgtcagtgaggtcaaagggaac
gagggtgggaagaggaaggaaaagaagttgtaa
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