Siniperca chuatsi (mandarin fish): 122875233
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Entry
122875233 CDS
T08948
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122875233 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
schu03019
]
122875233 (cnot1)
Messenger RNA biogenesis [BR:
schu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122875233 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122875233 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
122875233
NCBI-ProteinID:
XP_044050071
LinkDB
All DBs
Position
LG4:22785723..22813658
Genome browser
AA seq
2390 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLISKPNFISTLCYAIDNPLHYQKSLKPSAHLFTQLSKVLK
LSKVQEVIFGLALLNSSNADLRGFAAQFIKQKLPDLLRSYVDADLGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGASGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGELAKTMMESSLAEFMQEVGYGFCASLDECRNIILQYGVREVTASQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKNDGSQAHTWNVEVLIDVVKEVNPNLNFKEVTYE
LDHAGFIIQDSKGLNIVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLMSPEVFC
FADYPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGQYEQVKQLFGFPIKHC
PDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACVTFLKRRCPSIMGGLAPDKDQPKSAQLPPETLATMLACLQSCAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRAPSTSSLDAISPVQMDPLAGMGSL
NLGGTATSHTQSMQGFPTSLSSAFSNPQSPAKAFPPLSNPNPSTPFGGIGSLSSQLPGMD
SGPLGSGITSGIGSSLGMPTVNTDPFGTRKMSTPGLNPPTFQQTDLSQVWPEANQHFSKE
IDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYRFFP
QYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPYGSKMYYFGIAALDRFKN
RLKDYPQYCQHLASIAHFLQFPHHLQECVQYIEYGQQSRDPPVKMQGSITTPGSLALAQV
QAQAQSQQPGVPKAPQPGQPSTLVTTPTTTTTVAKTPTITRPTPSSFKKDVPPSINTTNI
DTLLVATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLV
MKRVSIEPNFHSLYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNL
GHWLGMITLAKNKPILYTDLEVKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSMVFRPQ
NPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLSLDINDLKPGNLLKDKEKLKSLEEQ
LSAPKKEAKPPEELLPVSTTGDFVPFAAPPSTPAATTTACTTTGPPTPQFSYHDINVYAL
AGLAPHININVNIPLLQAHPQLKQCVRQSVERAVQELVHPVVDRSIKIAMTTCEQIIRKD
FALDSEESRMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFAAALRAPTPQQREM
MEEAAARIAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLT
YQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPSNDLSQPTGFLAQPMKQQAWATD
DVAQIYDKCMADLEQHLHAIPPALAMNPLTQALRSLLEAVALARNSRDAIAALGLLQKAV
EGLLDATSGADADLLLRYRECHLLVLKALQDGRAYGPQWCNKQITRCLIECRDEYKYNVE
AVELLIRNHLVNMQQYDLHLAQSMENGLHYMAVAFAMQLVKLLLVDERSVSHVTEADLFH
TIETLMRTCAHSRANAPEGLPQLMDVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPP
GLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMC
VEISYRAQAEQQHNPAASAAIIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKV
LGIVVGVLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHIL
RPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELNK
PMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPF
TPNLKVDMLSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTFLSELRSNLQVSNEP
GNRYNIQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLF
LNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITF
IELIKNPAFKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7173 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctatctggtggacaattta
acaaagaaaaattacagagccagccagcaagaaatacagcatattgtaaatcgtcacggt
cctgaggcagacaggcatctactacgctgtctcttctcccatgtggatttcagtggcgat
ggtaaaagcagtggcaaggactttcaccagacacagtttctgatccaggagtgtgtgtcg
ctgatatcaaagccaaattttatctctactctgtgttacgccattgacaatcccctgcac
taccagaagagtttgaagccatcggcccacttattcactcaactgagtaaagttcttaag
ctcagcaaggtccaagaggtgatatttggccttgctttgctcaactccagcaacgcagac
cttcgtggttttgctgcgcagttcatcaagcagaaacttccagacctcctgcggtcatac
gttgacgcggatctcggaggaaaccaggaaggtggcttccaagacattgccatagaggtc
ttgcacctactgctctcccatctactttttggccagaagggagccagtggggtagggcaa
gagcagattgacgccttcctgaagacactttgccgagatttccctcaggagcgctgccct
gtggtgctcgcaccactgctgtaccctgaaaaacgggacattctcatggacaggatcctg
ccagactcgggggagttagcgaagaccatgatggagagttctcttgcagaattcatgcaa
gaagttggctatggcttctgtgctagtctggatgagtgcagaaacataatcctccagtat
ggggtgagagaagtgacggccagccaggtagctagggtcctgggcatgatggctcgtacc
cactctggcctaactgatggcatcccactacagtccatctctgctccaggaagtggcatc
tggagcgatggtaaggataagaacgatggctcgcaggcacacacgtggaatgttgaggtt
ctcatcgatgttgtgaaagaagtgaatcccaacctgaacttcaaagaggtgacatacgaa
ctggaccacgcaggctttataattcaggacagtaaaggcctgaatatagtggtgtatggc
attcagaggggtttgggcatggaggtcttccctgtcgatcttatctatcggccatggaaa
cacgctgagggacagttgtcattcattcagcactccctgatgagcccagaagtgttttgc
ttcgctgactacccttgccacactgtggccattgacatccttaaggccccaccagaggat
gacaacagggagattgccacctggaaaagtctggacctggtggaaagcctgcttaggctg
tctgaggtgggccagtatgagcaagtgaagcagctgtttggctttccaatcaagcactgc
ccagacatgttggtgctggcattgctgcagatctccacctcctggcacacactgcgccat
gagctcatctctacactaatgcccatatttctgggcaaccaccctaactctgccattatc
ctgcactatgcctggcatggacagggacagtctccctccattcgtcagctaattatgcat
tcaatggctgagtggtacatgagaggggagcagtatgaccaggccaagctgtctcgcatc
ctggatgtggcccaagacttaaagtctctatcgatgttgctgaatggtactccatttgcc
tttgttattgaccttgctgcacttgcctctcgccgagaatacctcaaacttgataaatgg
ctgactgacaaaatcagagagcatggggaaccttttatccaggcatgtgtgacattcctg
aagaggcgctgcccatccattatggggggtctggccccagacaaggaccaacccaaaagt
gcccaactgcccccggagaccttggccaccatgctggcctgcctgcagtcctgtgctggg
agcgtatcccaggagctgtcagagacgatcctgaccatggttgccaactgcagcaatgta
atgaataaagcccggcagccgccaccaggggtaatgccaaagggacgtgcccccagcacc
agcagcctggatgccatctctcctgtacagatggaccctctggcgggcatgggttccttg
aacctggggggcacagccacctcccacactcaaagcatgcagggtttcccaacctcgctg
agttcagctttcagtaatcctcagtccccagcaaaggccttcccgccactctccaacccc
aaccccagcacaccatttgggggtattggcagcctgtcctcgcagctccctggtatggac
tctggtcccttgggctcaggcatcacttctggtattggctctagtctggggatgccaaca
gtaaacacagatccttttggcaccaggaagatgagcacaccaggcctgaacccacctacc
tttcagcagactgacctttctcaggtgtggcccgaggcaaaccagcactttagtaaggag
atagatgacgaagcaaacagttatttccagcgcatctacaaccacccacctcacccaact
atgtctgtggatgaagtactggagatgctgcagaggttcaaggattcaaccatcaagcgg
gagcgagaggtgttcaattgcatgcttcggaacttgtttgaggagtaccgattctttccc
caatacccagacaaggagctgcacatcactgcctgcctttttggtggcattatcgagaag
ggtcttgtcacctacatggccctgggcttggcccttcgatatgttcttgaagccttaaga
aaaccctacggatccaaaatgtattattttggaattgccgccctagataggtttaaaaac
agactaaaagactaccctcaatattgtcaacacctagcttcaattgcccacttcttgcaa
ttcccccaccatttacaagagtgtgtgcagtatatcgagtatggccaacagtcacgggac
cctccggtgaagatgcaaggctccatcaccacccctggcagtctggcactggcacaagtc
caagcacaggcccagtcgcagcaacctggcgtccccaaagccccacagccaggtcagccc
agcactctagtcaccacaccaacaactacaaccacagtagccaagacccccaccatcaca
agaccaacacccagcagcttcaagaaggatgtccctccctccataaacacaaccaacatt
gacaccctgctggtggccactgaccaaacagaaagaattgtagaacctccagagaatgtc
caggagaagattgcttttatcttcaacaacctttctcagtccaacatgacacagaaggtt
gaggaattgaaagagacggtgaaggaggagtttatgccctgggtgtctcagtacctggtg
atgaagcgtgtcagcattgagcccaactttcatagtctctattccaactttctggacact
ctcaagaacccagagtttgtcaagatggtcctcaatgagacttacaggaatatcaaggtt
ctgttgacctctgataaggcagctgccaatttctctgatcgctccctgctgaagaacctg
ggccactggttgggcatgattacactggccaaaaacaagcctatcctttatacagatctg
gaggtcaagtctctgctactggaagcctatgtgaaaggccagcaggagctactgtatgtg
gttccctttgtggccaaagttttggagtccagtttacgaagcatggtctttaggccccag
aacccctggaccatggccatcatgaatgttcttgctgaactgcatcaggaacatgacctc
aagctaaacttaaagtttgagattgaagttctgtgtaagaacttgtctctggacatcaat
gatctcaagccaggcaacttgctgaaggacaaggagaagctaaaaagcctggaggagcag
ctgtcggcaccgaagaaagaggcaaagcctccagaagagttgctgccagtttctaccaca
ggagactttgttccatttgcagctcctccctcaaccccagctgccaccaccacagcttgc
acaaccaccgggcccccaaccccacagttcagttaccacgatatcaatgtgtatgccttg
gcaggcctggctccacacatcaatataaatgtcaacatcccattgctacaggcccatcct
cagttgaagcaatgtgtacggcaatcagtagagcgagctgtccaggagctggtgcaccct
gtggttgaccgctctatcaaaattgccatgacaacctgtgagcagatcatcaggaaggac
tttgccctggattcggaggagtctcgcatgcgcgtggctgcccaccacatgatgagaaac
ctgaccgctggcatggccatgatcacctgccgcgagcctctgctcatgagcatcgccacc
aaccttaagaacagctttgctgctgcacttagggctccaaccccccaacagagggaaatg
atggaagaggctgcagcccggattgctcaagacaactgtgaattggcttgctgcttcatt
cagaaaacagccgtggaaaaggctggccctgaaatggacaagagactagccacggagttt
gagctgaggaagcatgcgcgtcaagagggacgtcgttattgtgatcccgttgttctgact
taccaggctgaacgtatgcctgagcagatcagactcaaggtgggaggagtggaccccaag
caactggctgtatatgaggagtttgccaggaatgttccaggtttcttacctagtaatgat
ctctcccaacccactggcttcttggctcagcccatgaagcaacaggcatgggccacagat
gatgtggctcagatctatgataagtgcatggcagacttggagcagcatcttcatgccatc
cctccagctcttgccatgaaccccctgacccaggctctgcgcagcctgctggaagctgtg
gccttggctagaaactccagggacgccatcgccgcacttggcctactgcagaaggctgtg
gaaggtcttctggatgctactagtggggctgatgccgacttactgctccgctacagggag
tgccacctgctggtgcttaaagccctacaggatggacgtgcttatggaccacagtggtgc
aataagcagatcaccaggtgtctgattgaatgccgtgatgagtataaatacaacgtagag
gcagtggagcttctgatcaggaaccatctcgtgaatatgcagcagtatgacctgcacctg
gcacagtcgatggaaaatggactgcactacatggcagttgcatttgccatgcagttggtg
aagctgctgctggtggatgaacgcagtgtcagccatgtcacagaggctgacctcttccat
acaattgagactttaatgaggacctgtgcacactccagagccaacgcacctgagggtctt
ccccagctgatggatgttgttcgctcgaactacgaggccatgattgaccgggcccacggc
ggacccaacttcatgatgcactctgggatttcacaggcttcagaatatgatgaccctcca
ggcttgagggagaaggcagagtacctgctgagagaatgggtcaacctgtatcactcagct
gctgctggcagggatagcaccaaagctttctctgcgtttgtcggccagatgcaccagcag
ggcatcctcaagacagatgacctgatcacaaggtttttccggctgtgcacagaaatgtgt
gtggagataagctatcgggcgcaggccgagcagcagcacaacccagcagccagtgcagcc
atcatcagagccaagtgttaccacaacctggatgcctttgttaggctcatagccctgctg
gtcaaacactctggagaggccaccaacacagtgacaaaaatcaacctcctcaacaaggtg
ctcggtatcgtagttggggtgttgatccaggaccatgatgtccgtcagaccgaattccaa
cagctaccataccaccgcattttcatcatgctgctgttggagctcaatgcccccgaacat
gtcctggagaccatcaacttccagacactaaccgccttctgcaataccttccacatcctg
agacccaccaaagcacccggctttgtgtacgcgtggttggaactcatctcccatcgcatc
ttcatcgccaggatgctagcgcacacaccgcagcagaagggttggcccatgtacgcccag
ctgctgattgatctcttcaagtacctggccccattcctgaggaatgtagagctcaacaaa
cctatgcaaatcctctacaagggcacactgcgagtgctcctggtcctgctgcatgacttc
ccagagttcctgtgtgactaccattatggcttctgtgatgttatcccacccaactgcatc
cagctccgcaacctcatcctcagtgcctttccacgcaacatgaggctccctgaccctttc
acacccaatctcaaggtggacatgctgagtgagatcaacatcgctccccgtatcctcacc
aacttcacaggcgttatgccttcccagttcaagaaggatctggactcgtatctgaagact
cgttcaccagtgactttcttgtctgagctgcgcagcaacctgcaggtgtctaatgagccg
ggaaaccgctacaacatccagctgatcaatgctctggtgttgtatgtgggcacacaggca
atcgctcacatccacaacaagggcagcaccccctccatgagcactatcacccactctgca
cacatggacattttccaaaacctggccgtggacctggacactgaggggcgttacctgttc
ttgaacgcgatcgccaatcagctgcgctaccccaacagccacactcactacttcagctgc
accatgctgtatctgtttgcggaggccaacaccgaggccatccaggagcagatcaccagg
gttttgttggagaggctgatagtgaacaggcctcacccatggggtctcctcatcaccttc
atcgagctgatcaagaatcctgcctttaagttctggagccacgactttgtgcactgtgcc
cctgagattgaaaagctgttccagtcagtagcccagtgctgcatgggacagaagcaggcc
cagcaggtgatggaaggcaccggtgccagctag
DBGET
integrated database retrieval system
