Sorangium cellulosum So ce56: sce5832
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Entry
sce5832 CDS
T00634
Name
(GenBank) Probable pectate lyase precursor
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
scl
Sorangium cellulosum So ce56
Pathway
scl00040
Pentose and glucuronate interconversions
scl01100
Metabolic pathways
scl02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
scl00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
sce5832
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
sce5832
Enzymes [BR:
scl01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
sce5832
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-ProteinID:
CAN95995
UniProt:
A9G8H7
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Position
complement(8188518..8190302)
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AA seq
594 aa
AA seq
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MSPLVRCSCRITSIASSGDMEFKIDFDVPCRTDWQLMIAISESSPVGSPQYGLRLRAPVK
TSCARQPRAGPSRRCSASPCFIRATRRAQRRAHPGLPCSIRSCSAPDTYERGTRHMAFLP
TCSFIGAQGIRRFGCAIAAVSALTAISAPASALPSFPGAEGFGAVATGGRGGRVIKVTNL
RTSGSGSLQAALDASGPRIIVFDVSGVIEGDVVIRNGDVTIAGQTAPGAGITIRGRLTAR
YSTAVNNIIVRFLRVRPVHNGSAGEQFDATQISRNSKVMLDHMSIAWGVDETVDLYEADD
VTVQWSTIESSATTGHPEGMHNYGLINGPDGHRITLHHNLFAHHKARCPAVANGPADIRN
NVAYNVRHGFVHHNPARGQFNIVGNTYIKGPSDQLIPFYFDGSAGAGLKYFLGDNYIDDP
GKFTGTVENPWKQPYLHPSFSKLNKSESYRSATQFNFTRDVPGYIPVTTQRAQDAARLVV
AQAGSLPRDVVTKGVFKNMERRDGSWGARYVSNLMDGLSPGTAPADADRDGMADAWERAR
GLSSSNANDHSKVMPSGYTAIEEYINELAAALISKAAGSSSMLPDEGEIEAQIE
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atgagcccgctcgtgcgctgctcgtgcaggataaccagcatcgcttcatctggcgatatg
gaatttaagatcgattttgatgtgccctgtcgcacagattggcaattgatgattgccatc
agcgaatcgagtcctgtagggtcaccacagtacggcttgcggttaagagcgccggtcaag
acctcctgcgccaggcagccgagggcgggcccatcgcgtcgctgctccgcgtcgccctgc
ttcatcagggcaactcgtcgcgcccagcgccgcgcccaccctgggcttccttgctcgatc
cggtcttgttcggcgcctgatacgtacgaaaggggaacgagacacatggcattccttcct
acttgttctttcattggcgcacaggggatccgccgcttcggctgcgcgatcgccgcggtt
tctgcgctcacggcgatatcggctccagccagcgcgctcccgtcgtttccgggggcagag
ggctttggcgccgtcgcgaccggcgggcgcggcgggcgcgtcatcaaggtcaccaacctg
cgcacgagcgggtcggggagcctccaggcggccctcgacgcgagcgggcctcgcatcatc
gtcttcgacgtgagcggcgtgatcgaaggggatgtcgtcatccggaacggcgacgtgacg
atcgccggccagacggcccccggcgcgggcatcaccatccgcggtcgcttgaccgccagg
tactccaccgcggtcaacaacatcattgtacggttcttgcgagtccggcccgtgcacaac
ggctcggccggagagcagttcgacgcgacgcagatctcgcggaactcgaaggtgatgctc
gatcacatgtcgatcgcctggggcgtcgacgagacggtggacctctatgaggcagatgac
gtcacggtccagtggtccaccatcgaatcgtcggcgaccacggggcatccagaggggatg
cataattacggtctcatcaacggccctgatggccaccggatcacgctccaccacaacctg
ttcgcccatcacaaggcgcgttgccccgcggtcgcgaacggcccggccgacatccgcaac
aacgtggcctacaacgtgaggcacgggttcgtgcatcacaacccggcgagaggccagttc
aacatcgtgggcaacacctacatcaaggggccgagcgatcagctgatcccgttctacttc
gacggcagcgccggcgcggggctcaagtacttcctcggcgacaactacatcgatgatccc
gggaagttcacgggcaccgtcgagaacccctggaagcagccgtacctccacccgagcttc
agcaagctcaacaagtccgagtcgtaccgctcggcgacgcagttcaatttcacgcgggat
gtcccggggtacatcccggtgacgacgcaacgcgcgcaggacgcggctcggctcgtcgtc
gcgcaggcgggctcgctgccgcgcgacgtggtgacgaagggcgtcttcaagaacatggag
cgccgcgacggctcgtggggcgcccgctacgtgagcaacctgatggacgggctcagcccg
gggacggcccccgcggacgccgaccgcgacggcatggcggacgcgtgggagcgggcgcgc
ggcctcagctcatcgaacgcgaacgatcactccaaggtgatgccgtccggatacaccgcg
atcgaggagtacatcaacgagctcgccgccgcgctgatcagcaaggcggcgggcagctcg
tcgatgctcccggacgagggggaaatcgaggcgcagatcgagtag
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