Sphingobium cloacae: SCLO_1031270
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Entry
SCLO_1031270 CDS
T05301
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
sclo
Sphingobium cloacae
Pathway
sclo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sclo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SCLO_1031270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sclo03021
]
SCLO_1031270
03400 DNA repair and recombination proteins [BR:
sclo03400
]
SCLO_1031270
Enzymes [BR:
sclo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SCLO_1031270
Transcription machinery [BR:
sclo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SCLO_1031270
DNA repair and recombination proteins [BR:
sclo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SCLO_1031270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
MYO10_CC
Motif
Other DBs
NCBI-ProteinID:
BAV66167
UniProt:
A0A1E1F6Q0
LinkDB
All DBs
Position
SCLO_1:complement(3584906..3589072)
Genome browser
AA seq
1388 aa
AA seq
DB search
MATKALPPISNTGAKKRIRKVFGDIHEVVQMPNLIEVQRESYEQFLRSDPKIGYVSGLEK
TLRSVFPIRDFAGTAEMDFVHYELEDPKYDVEECRQRGITYAAPMRVTLRLIVFEVDQDT
ETRSVLDIKEQDVYMGDMPLMTQNGTFIVNGTERVIVSQMHRSPGVLFDHDRGKTHSSGK
YLFAARVIPYRGSWLDFEFDAKDIVNVRIDRKRKLPVTALLYALGLTAEEILGYFYNKVV
FVRGEGGWQIPYVAEAWRGQKPAFDIVDAKSGEVVFAAGHKISPRAANKAEKDGLETLLI
PTEEVYGRYSAYDLINEKTGEIYIEAGDEVSPENLEKLDKAGIDRLELLDIDHVTTGPWI
RNTLKADKAEERDQALSDIYRVMRPGEPPTKETAEALFAGLFFDPERYDLSAVGRVKLNM
RLDLDAEDTVTTLRVEDILAVVKELVNLKDGKGEIDDIDNLGNRRVRSVGELLENQYRVG
LLRMERAVKERMSSVDVSTVMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNPLSEVTHK
RRVSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFSRVNKYGFI
ETPYRKVVDGKVTNDVVYLSAMEEAKHTIAQANAEVDASGALTEDLISAREAGEFLMAPK
DHITLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEGT
VARDSGAAIAAKRAGIVDQVDAARIVIRVTGDIAAGQSGVDIYTLQKFQRSNQDTCINQR
PLVKVGDLIEAGDVIADGPSTEFGELALGRNTLVAFMPWNGYNYEDSILISERIVKDDVF
TSIHIEEFEVMARDTKLGPEDITRDIPNVGEEALRNLDEAGIVYIGAEVEPGDILVGKIT
PKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTVVEVRVFNRHGIDKDERAMAI
EREEIDRLAKDREDERAILNRATFNRLREMLLGQTAAAAPKGIKKGVAIDEALLSEVERH
EWWKFAVEDDKVQSDLEAVKAQYDEAVRSIVDKFEDRVDKLQRGDELPPGVLKMVKVFVA
VKRKLQPGDKMAGRHGNKGVISRILPIEDMPFLEDGTHVDIVLNPLGVPSRMNVGQIFET
HLGWAARGLGQQLKHALEEWRDANPNAQGGEMPDAVKTRLLETYGPQYADQIEGRSADQI
VDLAQHLERGVPMATPVFDGAREADVSAMLELAGLDSSGQSDLYDGRTGDKFDRKVTVGI
IYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLQE
MLTVKSDDVVGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGLNVELAAMDEVAEDD
DGFAQAAE
NT seq
4167 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccaaagctcttccccccatcagcaacaccggcgcgaagaagcgcatccgcaag
gtgttcggcgacatccacgaagtggtgcagatgccgaacctgatcgaggtccagagggag
agctacgaacagttcctgcgctccgatcccaagatcggctatgtctccggcctcgaaaag
acgctgcgctccgtcttcccgatccgcgactttgcgggcacggcggaaatggacttcgtc
cattacgagctggaagaccccaagtacgacgtcgaggaatgccgtcagcgcggcatcacc
tacgccgcgccgatgcgcgttacgctgcgcctgatcgtgttcgaggtggaccaggacacc
gaaacccgctccgttttggacatcaaggagcaggacgtgtatatgggcgacatgccgctc
atgacgcagaacggcaccttcatcgtcaacggaaccgagcgggtcatcgtgtcgcagatg
caccgctcgccgggcgtgctgttcgaccatgaccggggcaagacccactcgtcgggcaaa
tatctcttcgccgcgcgcgtcatcccctatcgcgggtcgtggctggacttcgagttcgac
gccaaggatatcgtcaacgtccgcatcgaccgcaagcgcaagctgccggtcaccgcgctg
ctctatgcgctgggcctgacggcggaggaaatcctcggctatttctacaacaaggtcgtt
ttcgtccggggcgaaggcggctggcagatcccctatgtcgccgaggcatggcgcggccag
aagcccgctttcgacatcgtggacgcgaagtcgggcgaagtcgtgttcgccgccggtcac
aagatcagcccccgcgccgccaacaaggcggaaaaggacgggcttgagacgctgctgatc
ccgaccgaggaagtctatggccgctattcggcctatgacctcatcaacgagaagacgggc
gaaatctatatcgaggccggtgacgaagtgtcgccggagaacctcgaaaagctggacaag
gcgggcatcgaccgcctcgaactgctggacatcgaccatgtgaccacgggtccgtggatc
cgcaacacgctgaaggccgacaaggcggaggagcgcgaccaggcgctgtccgacatctat
cgcgtcatgcgccccggcgagccgccgacgaaggaaaccgccgaggcgctgttcgccggg
ctgttcttcgacccggaacgctatgacctgtcggccgtgggccgcgtgaagctcaacatg
cgcctcgacctcgacgccgaggacacggtgacgacgctgcgggtcgaggatatcctcgcc
gtggtcaaggaactggtgaacctgaaggacggcaagggcgagatcgacgatatcgacaat
ctcggcaaccgccgcgtccgttcggtcggcgaattgctggagaaccagtatcgcgtcggc
ctgctgcgcatggagcgcgcggtcaaggaacgcatgtcgagcgtcgacgtgtcgaccgtg
atgcccaacgacctcatcaacgcgaagcccgccgtggccgctgtgcgtgagttcttcggc
tccagccagctttcgcagttcatggaccagaccaacccgctgtcggaagtcacccacaag
cgccgcgtgtcggcgcttgggccgggcggcctgacccgtgagcgcgcgggcttcgaagtg
cgcgacgttcacccgacgcactatggccgcatctgcccgatcgagacgccggaaggcccg
aacatcggccttatcaactcgctggccaccttcagccgcgtgaacaaatatggcttcatc
gaaacgccctatcgcaaggtcgtggacggcaaggtgacgaacgacgtcgtctacctgtcc
gccatggaagaggccaagcacaccatcgcgcaggccaacgccgaggtggacgccagcggc
gcgctgacggaagacctgatctccgcgcgggaagcgggcgaattcctgatggcgcccaag
gaccacatcacgctgatggacgtcagccccaagcagctggtgtcggtcgcggcctcgctc
atccccttcctggaaaatgacgacgccaaccgcgccctcatgggatccaacatgcagcgc
caggcggtgccgctggtgcgtgccgaagccccgttcgtgggcaccggcatggaaggcacg
gtggcgcgcgattcgggcgctgccatcgccgccaagcgcgcgggcatcgtcgatcaggtg
gatgcggcccgtatcgtcatccgcgtgaccggcgacatcgccgccggacagtcgggcgtc
gacatctacacgctccagaagttccagcggtcgaaccaggacacctgcatcaaccagcgt
ccgctggtgaaggtgggcgacctgatcgaggcgggcgacgtgatcgccgacggtccctcg
accgagttcggcgagctggcgctgggccgcaacacgctggtcgcgttcatgccgtggaac
ggctacaactatgaggactccatcctcatcagcgaacgcatcgtgaaggatgacgtcttc
acctcgatccatatcgaggaattcgaggtcatggcccgcgacaccaagctggggccggaa
gacatcacccgcgacattcccaatgtcggcgaggaagcgctgcgcaacctcgacgaagcg
ggcatcgtctatatcggcgccgaggtggagccgggcgacattctggtcggtaagatcacc
cccaagggcgaaagcccgatgacgccggaagaaaagctgcttcgcgcgatcttcggcgaa
aaggcgagcgatgtgcgtgatacgtcgctgcgtctgccgccgggcgtcgcgggcacggtc
gtcgaggtgcgcgtgttcaaccgccatggcatcgacaaggacgagcgcgccatggcgatc
gagcgcgaggaaatcgatcgtctggcgaaggaccgcgaggacgagcgcgcgatcctcaac
cgcgcgaccttcaaccgcctgcgcgagatgctgctgggccagaccgccgcggcggcgccc
aagggcatcaagaagggcgtggccatcgacgaggctctgctgagcgaagtcgagcgccac
gaatggtggaagttcgcggtcgaggacgacaaggtccagagcgatctggaagcggtcaag
gcgcaatatgacgaagccgtccgctccatcgtcgacaagttcgaggatcgggtcgacaag
ctccagcgcggcgacgagctgccgccgggcgtgctcaagatggtcaaggtcttcgtcgcg
gtgaagcgcaagctgcagccgggcgacaagatggcgggccgtcacggcaacaagggcgtc
atcagccgcatcctgccgatcgaggacatgccgttcctggaggacggcacgcatgtcgac
atcgtgctcaacccgctgggcgtgccgtcgcgcatgaacgtcgggcagattttcgagacg
catctgggctgggccgcgcgtggccttggccagcagctcaagcacgcgctggaggaatgg
cgggacgccaatccgaacgcgcaaggcggcgagatgcccgatgcggtgaagacgcggctg
ctcgaaacctatggcccgcaatatgcggaccagatcgaagggcgcagcgccgaccagatc
gtcgatctggcgcagcatctggaacgcggcgtgccgatggcgacgccggtgttcgacggt
gcgcgggaagccgacgtttcggcgatgctggaactggcggggctggactcgtccggccag
agcgacctctatgacggccgcacgggcgacaagttcgaccgcaaggtgacggtgggcatc
atctacatgctcaagctccaccacctggtcgacgacaagatccacgcccgttccatcggc
ccctactcgctcgtcacccagcagccgctgggcggcaaggcgcagttcggcggccagcgc
ttcggtgaaatggaggtgtgggcgcttcaggcctatggcgccgcctataccttgcaggaa
atgctgacggtgaagtcggacgacgtggtgggccgcaccaaggtctatgaggcgatcgtc
aagggcgacgacacgttcgaagccggcatccccgaaagcttcaacgtgctggtcaaggaa
atgcgctcgctgggcctcaacgtcgaactcgccgcgatggacgaagtcgccgaggacgac
gacggcttcgcgcaggcggcggaataa
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integrated database retrieval system
