Styela clava (leathery sea squirt): 120337726
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Entry
120337726 CDS
T07291
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
sclv
Styela clava (leathery sea squirt)
Pathway
sclv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120337726
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sclv03019
]
120337726
Messenger RNA biogenesis [BR:
sclv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120337726
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
120337726
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
NOT1_connector
CNOT1_CAF1_bind
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
CCDC24
Motif
Other DBs
NCBI-GeneID:
120337726
NCBI-ProteinID:
XP_039261542
LinkDB
All DBs
Position
Unknown
AA seq
2623 aa
AA seq
DB search
MNLDSLSLALSHISYLVANLSKKNYKSGVQEILQLTERHGPEADRHLFRCLFSSIDFGGD
GKSNGKDYHQTQLLILQCSTLATKPGFISILCHSVDSPFSHQKSLVPSDSLLTNISRVLK
FTKVQEVTFAIALQHSSIQEVRKQATEAIKTQLPELIRLHLESVKVSGRGSNSQDIGLQD
TAIEVLHLLLSYLAKDSSGIVSPDKKQAFLATLRSNFPIDRCPIVLLPLLYREKEDLHMD
RLLTESTGMLTESTGSIHKARAFMADVIREIGYSSCSSVEECRKILVQYGVTVNASQVAR
VLGMMASTISEPLDNIPPLQSLSGGGTWSDSKDKNESSNSWNVEAFVQAVKDLNPNLSFQ
NVMKELDYPSFIINNAQALLLVVKAITFGIPPKDLFPTATLYQPWKNSNGQLSWIQQSLL
NPGIFCFADHPCHLCAVDILKQPLDEENKEILNWKSLDLVECLLQLSQNGHYEPVKTLFM
WPMKHCPDLLMLSLLQLSSPFHKLRQELISNMLPTFLNLHPNSGIILHYAWHGQGQSPAI
KQLVMLSMAEWYMRDQHDQQRLSRILDVAQDLKALSHLLNASPFAFVIDLAVLASRREYL
KLDKWLTDKIREHGEHFIQACVAFLKRRCPSILGVKDDGQPKNLQLPPETLATVLVCLQA
CVGNVSQTLSENILTMVANCSSLMSKTRQAPPGVMGNNRQPGAPGSSVIAAPASNVLPET
SLSKTLDLPGMGAFSGNPTQQQASTQQSTQQEPTQLPGFGGSLHVQPPGSSAFGMSANDQ
SMLSATNLTPSNMLSTSAAGNAPGLPASSNPLLDKSRSTAIGPIGGGASGTIGQLNNSAF
SSSVGQNLASNSFGLTGNNSSANQGIGGGPFSSQLGFDSQMSQGFGASNQLLAGLGGLSI
SGSATDSFSSSKFDSFGGQKLDMLNRKVQDLFGQSKQIGLGNSGGMGTGPSLGGGLGGSL
GGGMGTGLGVFGQKKTNAAGSLGAATQQAFQQAAAKSAKPAATGDLSQVWPEMNQQFSKE
IEDEANSYFQKIYNQPPDSTLTVDEILDLLRKFKDSTIKKEREVFNCMIRNLFEEYRFFP
QYPDKELYITACLFGGIIEKNLVTYLALGIALRYVLEALRKPQPNKMYYFGIAALDRFKN
KLREYPQYCLHIAGIPHFKEFPPHLVEYVDYGKLSKEPPMKAQRTTHGSLTPSSMNPLQQ
QIAQPSPQSGSLTPTRMPPSTVGAVAPQPQRASSAGAKPIGKEQPSIAKATNIDTLLGAQ
APEEKIPEPPESAQDKIAFIFNNLSSSNIQAKSEEMQGVVEDEYIAWLSQYFVMKRVSIE
PNFHQLYSNFLECLRMPKLTKLVHKEVFRNITVLLKSDKIDANFSDRSLLKNLGHFLGML
TLPKNKPILFEDIDLKSLLYEANMKGAQELLYVVPFVAKILESVGKSRVFKLPNPWTEAI
IGALVELHNEPDLKLNLKFEVEVLCKNLQLDINEIKPSNYLRDPSYKHTIDYQLSASNKD
TNSSKPGTPSVGLDQDLVQKSIPPPGVTLSAAGSLPPSTTSAGKGFGQTMPQMLSMSSSV
PRFSLHDINIYSISTLQSHLMVKPEILKNVPLITPAALKSCVRMSVERAVQELLQPVVDR
AIKIAMTTCEQIVKKDFALDPEEFRMRAAAHHMVRNLTAGMALITCREPLIQSITNYLKI
NLPQAIQRVGVQQPKELIEQAATVLAQDNMELACCFIQKTAIEKAFMEIDKRMATEFELR
KHARQEGRRYCDSVVLTYQAERMPEQIRLKVGGVTPHQTAVYEEFARCIPGFLPSNDASQ
PSGFLAKPMQSWPVDEITQVYDRCIRELEQHIQAISLPPNSLPQSQLQNLLEATAHARNS
REIVTALALLQKAVEGLLERLTLPPSEEAQSVAARYRECHILVMKALQDQRAYGPQWTNK
HVTRLLVEHRDEYKYNVEAVDLLIKTHLVNLQQYDMHLAQSMENGLNYMAVQFAMQLVKL
YLLDEKQGSPVTESDLYNTIEMLVKINTHTQGTAPEGLSQLITMIRSNYDTILDKAPGGP
THMMHSGISQAREYDDPPGLNEKTEYLLREWVNIYHSPTSGRDSTRGFSTFVQQMHQQGI
LRTDDLITRFFRLCTELCVDLTYRLLQESNISPSLLNPTLVRAKCFHTLDAFVRLITLLV
KHSGDAANSVTKINLLNKVLGIVVGVLQQDHDQRQTEFHQMPYHRIFIMLFYELNAPEHV
LESINFQTLTAFTNTYHILRPTKVPGFSFAWLELISYRSFISRMLLQTPQQKGWPMYAQL
LIDLFKFLGPFLRNVELTKPMQVLYRGTLRLLLVLLHDFPEFLCDYHYGFCDVIPANCIQ
LRNLILSAFPRNMRLPDPFTPNLKVDMLQEINSAPRILTNFVAVMPANFRKDLDSYLKTR
APVTFLSDLRGNLQLSNEPGMKYNVALINSLVLYVGTQAIQYIYSKGGTPSMSTITHSSH
MDIFQNLSVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTLLYLFAEANQEAIQEQITRV
LLERLIVNRPHPWGLLITFIELIKNPNFKFWNHEFVHCAPEISKLFESVARSCMGKQFTQ
QSQQQTGQTAGNPSQQPSTSQQTTANMIQQQTDAISTVASVSL
NT seq
7872 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgattccttgtctttagcattatcgcatatcagctaccttgtggcgaatttg
agcaagaaaaattataagtctggtgtgcaagaaatactacaacttactgaaagacacggc
ccagaagcagatcgtcatttattccgctgtcttttttcatccattgattttggtggggat
ggtaaaagtaacggaaaagattatcatcagactcaactattaatattgcagtgcagcact
ttagctacaaaaccaggtttcatttcaattctctgtcactcagttgacagtcccttctct
catcaaaaatcattggtaccttctgactctctacttaccaatatcagccgtgttttaaag
ttcacaaaagtacaagaagtgacttttgcaatcgctctgcaacattcgagcattcaggaa
gttcgaaaacaagctactgaagcaattaaaactcagttgcctgaattaatccgattacat
ttggaaagcgttaaagttagtggaagagggagcaattcacaggacattggcctgcaagac
actgccatcgaagtactgcacttacttcttagttatcttgccaaagatagctctggaatt
gtttcacctgataaaaagcaagcttttcttgccactctcagatctaatttccccattgat
cgttgtccaatcgtactattaccattgctttatcgggagaaagaagatttacatatggat
cgattgttgactgaatctactggaatgttgactgaatctactggaagtattcataaagca
agagcatttatggcagatgtcattagagaaataggatattcatcatgttcaagtgtcgag
gaatgtcgcaaaattctggttcaatatggcgtcactgtcaatgcaagtcaggttgctcgg
gtgcttgggatgatggccagtactatatcagaaccattagacaatattcctcctttgcag
tccctgtcaggaggtggaacttggtccgactcgaaggataaaaacgagtcatctaattcg
tggaatgttgaggcttttgtacaagctgtgaaagatttgaacccaaatttgagttttcaa
aatgttatgaaagagttggattatcctagttttatcatcaacaatgcacaagcacttctt
ctggttgtcaaagcaataacttttggaattccacccaaagatctatttcctacggctact
ttataccaaccgtggaagaattcgaatggtcagttgtcatggatacaacaatcattgctt
aatcctggtatattctgttttgctgatcatccttgtcatttatgtgccgtcgacatattg
aaacaaccactggatgaggaaaataaggaaattttaaattggaaatctttggatttggtt
gaatgtcttctacagctttcacaaaatggacattatgaacctgtcaaaacacttttcatg
tggccgatgaaacattgcccagatttattgatgttgtctctgctacagctcagttctccg
tttcacaaattacgacaagaattaatttctaatatgcttccaacatttctcaatcttcat
ccaaattcaggaatcatattacattatgcttggcatggacagggtcagtctcccgccatc
aaacaattggtgatgttgagtatggctgaatggtatatgagagatcagcacgatcaacag
agactgtcaagaatattggatgtagcacaggatcttaaggcactttcccatttgctgaat
gcaagtccatttgcatttgtgatcgatttagccgttcttgcatctcgaagggaatattta
aaattggataaatggttgacggacaaaatccgagaacatggtgaacattttatccaggcc
tgtgttgctttcctaaaaaggagatgtccatccattttaggtgtaaaagatgacggtcaa
ccaaagaacttgcaacttccacctgagacattagctactgtgttagtttgtctgcaagct
tgtgttgggaatgtgtctcagactctttctgaaaatattctcaccatggttgcaaactgc
agtagtttaatgagtaaaacaagacaagcacctcctggtgttatgggaaacaatagacaa
cctggtgcacctggatcatcagttattgccgcacctgcttctaacgtcctgcctgaaact
tcactttcaaaaacgttggatttacctggtatgggtgcattttctggaaacccaactcaa
caacaagcatcaactcaacaatctactcaacaagaacctactcagttacctgggttcgga
ggaagtttacatgtacagccaccaggatcttctgcgtttggaatgtccgctaatgatcag
agtatgttatcggcgaccaatttgaccccttcaaacatgttgagcacatcggcagcagga
aacgccccaggattaccagcgtcgtccaacccacttttagataaaagccgcagcacagct
attggtcccataggaggaggtgcaagtggtacaattggtcaactaaataacagtgcgttt
tcatcttctgtcggacaaaatctcgcaagtaatagtttcgggttaacaggaaataattca
agtgcaaatcaaggaattggtggtggaccgttttcttctcaacttggatttgatagccag
atgtcacaaggttttggtgcttctaatcaacttttggctggacttggaggtctcagtatc
agtggttctgccacggattctttttcatcctcaaaatttgattcattcggtggtcagaaa
ttagatatgttgaataggaaagtacaagacttatttggtcaatcgaaacaaattggattg
ggtaatagcggaggtatgggtactggtccttcacttggcgggggtctaggtggcagtctt
ggtggtggtatgggcacaggactaggtgtgtttggtcaaaagaaaacaaatgcagctggt
tctcttggagcagcaacacaacaagccttccagcaagctgcagccaaatcagcaaaaccc
gctgcaactggtgatctttcacaagtttggccagagatgaatcaacaattcagtaaagaa
attgaagatgaagcaaacagttattttcagaagatttacaaccaacctcctgattcaaca
ttaactgtagatgaaattttagatttgctgagaaaattcaaagattcgacgattaaaaaa
gagcgggaagtctttaattgcatgattagaaatttgtttgaagaatacagattttttccg
cagtatcccgataaagaactatatatcactgcttgcttgttcggaggaatcattgaaaaa
aacttggtgacatatctagcacttggcattgctttacgttacgttttggaagcgttgcgg
aaaccccaaccaaataaaatgtattactttggtattgctgctctggatagatttaaaaac
aaactaagagaatatcctcagtattgtcttcacatcgctggaattccacattttaaggaa
tttcctccgcatctagtagagtatgttgattacggcaaactttctaaagaaccaccaatg
aaagcacagagaacaacacacggctccctaacacccagcagcatgaatccactccaacaa
caaattgctcaaccatcccctcaatctggttcactcactccaacaagaatgccaccatct
acagttggagctgttgctcctcaaccacaaagagcatcatcagctggtgcaaagccaatt
ggaaaagagcaaccatcgattgccaaagctacaaatatcgacactttactcggcgctcaa
gctcctgaggaaaaaatcccagaacctcctgaatcagctcaagataaaattgcttttatc
ttcaataacctttcaagctctaatatacaggctaagagcgaagaaatgcaaggcgtagtg
gaagatgaatatatagcatggctttctcaatattttgtgatgaagagagtcagcattgaa
ccaaactttcatcagctttattcaaatttcctggaatgtcttcgaatgccaaaactgact
aaactagttcataaggaagtgtttcggaatattaccgttttgctcaagtcagataaaatt
gatgcaaacttctcagatagatcgctgttaaaaaatcttggacatttcctcggaatgcta
acattgccgaaaaataagccgattctttttgaggacattgatttgaaatctcttctatat
gaagcaaatatgaaaggagcacaggaacttctatacgttgttccattcgtggcaaaaatt
ttggaatctgttggcaaaagtcgagtattcaaacttccaaacccatggactgaggcaatc
attggagctcttgtggagttgcataatgaaccagatctaaagctcaacttgaaatttgaa
gtcgaagttttatgtaaaaatttacaactggacatcaacgaaataaagccatcaaattat
ctacgagatccatcgtacaaacataccatcgattaccaactatccgcttccaataaagat
acaaacagtagtaaaccaggaacaccatctgtcggattagatcaagatctagttcaaaaa
agcattccacctcctggcgttacattatcggctgctggcagcttgcctcccagtacgaca
tctgctggaaaagggtttgggcagactatgccgcagatgttgtcaatgtcttcatcagta
ccaaggttttcactgcatgatatcaatatctactccatatctaccctacaatcacatttg
atggtgaaacctgaaatattgaaaaacgtaccgttaatcaccccagctgcattaaaaagt
tgtgtcaggatgtcagtggaacgagcagtccaagagttattacaaccagtggtggatcgt
gctattaaaatagctatgacgacatgcgaacaaattgtcaagaaagattttgctttagac
ccagaggaatttcgaatgcgagcagctgctcatcatatggttcgcaatctgactgcagga
atggctttaattacatgcagagaacctcttattcaaagtattactaattacttgaaaatc
aatctgccacaagcaatacagagagtgggtgttcaacaaccgaaagaattaatagagcaa
gcggccactgtcctggcacaagataacatggaattagcatgctgcttcatacagaagact
gcaattgaaaaagcatttatggagattgacaaacgaatggctactgaatttgagttacgc
aagcatgcacgacaagaaggtcgtcgatattgtgattctgttgtattgacataccaagct
gaacgtatgccagaacaaattcgattgaaggtgggtggtgttaccccacaccaaactgca
gtttatgaagaatttgccagatgcattccaggctttttaccaagcaatgatgcttcacaa
ccttcaggatttctggccaaaccaatgcagtcatggccggtggatgaaatcactcaagtt
tacgacagatgcattagagaactggagcaacatattcaggcaatcagccttccaccaaat
agtcttccgcaatcacaactacaaaatcttctggaagcgactgctcacgcaagaaattct
cgagaaattgttactgcacttgctcttctacagaaagctgttgaaggtttgctggagcga
ctcactcttccacctagcgaagaggctcaatctgtcgctgcaagatatcgtgaatgtcac
attcttgtaatgaaagctttacaagatcagcgagcgtacggaccccaatggacgaataaa
cacgttacgagattacttgttgaacacagagacgaatataaatataatgtggaagctgtc
gatctgttgatcaaaactcatctcgtcaatcttcaacaatacgatatgcatctggctcag
tcaatggagaatggtcttaactacatggcagtacaatttgctatgcaactggttaaatta
tatctactcgatgaaaagcaaggttctcctgttactgaatcagacttgtacaataccatt
gaaatgctggtgaaaatcaatacacacacacagggaacagctcctgaaggattgtcacag
ctgatcacaatgattcgatcgaactatgacacaattctcgataaagcaccaggggggccg
acacacatgatgcattctggtatatcgcaggctcgtgaatacgacgatccaccaggattg
aacgagaaaactgaatatttattgagagaatgggtcaatatttatcacagtccaacatct
ggaagagattcaaccagaggattttcaacattcgttcaacaaatgcaccaacaaggaata
ttacgtactgatgacctgatcactagattcttccgcttatgtactgaactctgtgtagat
ttgacgtatcgtctgttacaggagtccaatatcagtccatcacttctgaatccaacgttg
gttcgtgccaaatgttttcacacattggatgcttttgttagattgattacattactcgta
aaacattctggagacgcagctaactctgttacgaaaatcaatcttttgaataaggttttg
ggaattgtagtcggtgttcttcaacaagatcatgaccagagacaaaccgaatttcatcag
atgccgtaccatcgtatattcatcatgttgttttacgaattaaatgcacctgaacatgtt
ttagaatcgatcaacttccagacactaacagctttcacaaacacttatcacattcttcga
ccgacgaaagttcctggattttcatttgcatggttagaactgatttcataccgttcgttc
atttcaagaatgctgttacaaacacctcagcaaaagggttggccaatgtacgcacaactg
ctcatcgacttgtttaaattccttggtcctttcttgcgtaatgttgaattgactaaacca
atgcaagttttatatcggggaacattgagattgctacttgttctactgcacgatttccca
gaatttctttgcgactatcattacggattctgtgacgtaattccagcaaactgcatacaa
cttcgtaatcttattcttagtgctttcccgaggaatatgagattgcctgatccttttaca
cctaatttaaaggttgatatgctgcaggaaatcaacagtgctcctcgtattcttactaac
tttgttgccgtgatgccagctaatttcagaaaagatctcgacagttatttgaaaacaagg
gcaccagtcactttcctttctgatttgagaggaaatttacagctatctaacgaaccaggg
atgaaatacaacgtagctctcattaattctcttgtgttgtacgtgggcacacaagctata
caatatatttatagcaaaggtggtacaccttctatgagcaccatcacacactcgtcacat
atggatatattccagaatttatctgttgatttggacactgaagggcgttacctatttctg
aatgctattgcaaatcagttacgttatcctaacagtcacactcattacttcagctgcaca
ctcttgtatttgtttgctgaagcaaatcaagaagcaatacaagaacagataacaagggtt
ctacttgaaaggctgattgttaatcgacctcatccttggggacttctaataacttttata
gagttgatcaagaatcccaatttcaagttctggaatcatgagtttgtgcattgtgctcct
gagatctcaaagttgtttgaatctgtagctcgtagttgcatgggcaagcaattcactcaa
caatctcaacaacaaactggtcaaacagctggaaatccatcacagcagccaagcacaagt
cagcagacaactgccaatatgattcaacaacaaactgatgccatttcaacagtagcatct
gtgtctctgtga
DBGET
integrated database retrieval system
