Styela clava (leathery sea squirt): 120340681
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Entry
120340681 CDS
T07291
Name
(RefSeq) sodium channel protein type 3 subunit alpha-like isoform X1
KO
K04834
voltage-gated sodium channel type II alpha
Organism
sclv
Styela clava (leathery sea squirt)
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sclv04040
]
120340681
Ion channels [BR:
sclv04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
120340681
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
IQ_SCN5A_C
IQ
Lustrin_cystein
Motif
Other DBs
NCBI-GeneID:
120340681
NCBI-ProteinID:
XP_039264937
LinkDB
All DBs
Position
Unknown
AA seq
3000 aa
AA seq
DB search
MAHIQQCLDSFVTWSSESWCKFLVIGTILCLKSLGIDWKRVLHQVFGKHIVKAFHRFFFN
RKGDPVAEQRRLLQDRVRIERRLAEIDSAKREENVRLNLSRLATKKRLQSSVQYLPTPSQ
AIEGVRHVSWSDGYSSQKPTNDFKEDGEEDFIMPPRLNLATKRRNAMGHKAHRKSLMQGI
LSVASGDGKTPTSELKEGKKLPDYLTKDLENETYRSPACAYTALPDPDKYYEKGTYIVVN
QQETTFRFSESKSLFIFDRTSKIRQFCINLFIRPLFSHFIMMVILANCVCMMLAEPPPWI
EDYLEHVFTAIYCFEAAIKIIGRGFILHRFAYLRDPWNWLDFIVIVFALITALLKDLVGQ
FSVLRAFRVLRALKTMSVVPGLRGIVKALLRSIRALQDAVVLTIFCVSVFALVGYQLFSG
TLRNKCVLIPGSLSVGPDAMYVVDLNMAPKHEDYFSVAASTDYSSSTFKNDSNFTHTLVK
QSYNSPGVSPFALIPLYNTSRVEGETIYEGITNFVETLHWNSEDANLTSTILDRLNETLA
EKYRGYLSTKKNNINKTRDSNATTMKKNEYKESCDTVFQHCLAYEQIKIRTTSQCSILNM
AIHMSHRDSIIKSNCEYIDSVSNGVKFYVPSAEIMLNSTTFTHARPATTRNSMHAVSVSC
NTSFEVLAGNISCMYEAIRSRRSSNSSVDFSNHSCYHNNTWLKIIAYGKTNIPRWRARKS
VVLFRLSKVSSTDRSNATDTKSLDPIKFFNKEKGFLIFGEYTREELSTEVEKEWDCNENN
YILRSVDSGMYFYQNSSNRPNREPLYCTSGENSVCPIAYECKQAGGNPDFGYTNFDHFFW
AFLTSFRLIAQDAWSRLFYLTLHTIGKSYVVFYIIVMFLGSYYLINLILAVVYMAYEEQQ
AVVEDEELEEEEHKAEIRELEASSDDNSSRTQDDESGSRCDSVRSGCVSEGTRRFGLITT
SLTSINDAGGIRIRHRSSKRSRYGHRRTPVRLDQESEQLYRQHTKKYGDGLFKEHSDMTS
GRDHRTCRTKQPNRQDSFTSEASFVLNSEKTTCSNPSRQIEMPAFRNRCSYIRGCRGSHN
VDRKLGSTENFISVKKKEEQPVSLFVTPVHEPKYAENTPDPVDMKLRNTKLDVINVNFEM
GRSSSIYSSGSDISSKTDEAVMLPPLSFCEHCRRNRISPRSRTVSENLPTTLLDPPALRG
NQDCMKSNDEIPCFLQVATDCTSRFSGSTSSTSGLFEATERVVQAEISPTCHWLSPPAPA
RCLKKTNRLTSSSSSPSSSTIISNNKKFSEDGSRESASNTNKSDNDSCIPLQVPSLLVTS
ASSEHISTMSGVLDSIKLYDQSCENGGKLESDGEIALARHSLPGAVDKPELKSNDKEYGP
VTSLNDIDRMHTSAFKTLQKRATQKKTAYAEDQTLHNYKRRSRATYPRSSLDKPDSSSAV
DIGTFAIQHKGQCNRQIHGQYDLPDTIAPYRNLTANDDIADFEVPLVNGRQGNVPLASVD
SNETNGNRTRKKPLKRVIRHYLLSAKRSWIDVFCMWTCCSPRWVKFQSFVRGLVLDPFMD
LFITLCIFLNTVFMMAEYHPMPKSHENLLENANLAFTVVFTLEMFLKVVGLGPHTYFREA
WNMFDAVVVISSLLEIVLKTIPGLSVLRTFRLMRILKLAKSWPTLNKLLRIIGRTLGKLW
HLTIVFLLVLFIFAVVGMQLLREKYKTEFGDNMPRWNFDNFPHAFMVVFRIQCGEWIENM
FTCMNVASPGICIPLFILVLVIGNLVILNLFLALLLNSFSGDALQRTDAEPNSLAEAWQR
ILGWIGKGRRALRHCNIVTHCCNKIRLQLCMGQQTARTNKKCEVVKKKKREQEYRSNLGM
NLSSNRTATLSECEPHMPEIKNNCLNSVTAPSIILGKVNLSELKKDSCHSSMSMRGDKTD
ETGILCDNSDSEKYKTEELIKTLNDGDDQNHDKHHSHSFHRHSINSRGASGTIKRRRRDL
TSSNMKIRCDGCHREYSAVRIRPDKRNREKVGFAPAAAFQNRVDSPSPPETRSNRDDDIE
LPRLPRHPFKASIEYTRTSHEDRIRPNEENVANDKSSSVENRSRCQSGQSENEQSPIPDP
VRVENVAGVARKYSGAEETDVLICGYKSVPSTSVKQNSTRSSHKSSSSVRSRRSKDKRGF
EEGDKKLEEAETPKEIEIQQCFPPFWINKTDGKFWKIRLVFYNIAVHRYFENMVIFFIML
SSVALAFEDIYLPNKPAMARVLDVLDKFFCIFFTIEMLIKWTGFGIKYYITNGWCILDLI
IVFFSLLDLGLSLNGGASEQLASLRVLRTFRALRPLRALSRFQGMKVVVDALVRAIPSIF
HVFLVCIIVWLIFSILGVNLFGGRFGRCVMFTGSSGVILPRPDNSSNNSVFLEISDMCLP
NMTFPLNDSSIPAVRNKVECLECARLMNTSNIQWIVPSINFDNVGQGFLALMQVATFKGW
LEIMANAIDIMGIEQQPSYEVSFENYAYFCIFIIFGAFFSLNLFIGVIIDNFNQQKVKCA
GGEDGVFLTDEQKRYYNAMKRMAAKAPSKPIPRPNSWFPNKIYDLVTDRKFEIVVMAMIL
LNMVVMAVEHYDMSQEMSDVLGNFNLFFICIFFVEAVLKLIGLRWYYFTVPWNVFDIIVV
VVSIIVKCLFTASALSDAIEKYFVQPTLFRIIRLFRVTRILRLIREAKGIRTLLFALMMS
IPALFNIGSLLFLVIFIYAILGMSQFAYVQKIAGVDDLLNFETFPNAFLVLFQVSTSEGW
NTFIEPILRDKPPSCDPDIPNRTGNGNCGNATVGVAYFVTYVLITFLIVINMYIAIILEN
FEVATRESSEPLTADDFEQFFEVWQRYDDRLSQFITFEQLQHFLHHLDFPLRVPFPNKAF
IANARMKITPNGRVHCLEVIIALIKKVLGDSPELGTFKKDMMESFMLKCKTKEPLEEGDT
IDTMEYIKRRRSAIVIQKAYRKYKCEQPEIDLNRPFALNECQFTDRNSSSPTTSESEETL
NT seq
9003 nt
NT seq
+upstream
nt +downstream
nt
atggcacatattcagcaatgtcttgacagttttgttacatggtctagcgagagctggtgc
aagtttttggtaatcggcacgattttgtgtttaaagagtcttggaattgactggaagcga
gtgttgcatcaggtttttgggaaacatatagtaaaagcatttcacagatttttcttcaat
cgaaaaggagatcccgttgcagaacaacgacggctattgcaggatagggttagaatcgaa
agaagattagcagaaatcgattctgccaagagagaggaaaacgtacgcttgaatctcagt
cgtttagctactaaaaagcgcctccagagcagcgtgcagtacttgccgaccccttctcaa
gcgatcgaaggcgtgagacacgtttcctggtccgacggttattcttcgcaaaaacccacc
aacgactttaaggaagacggcgaagaggatttcatcatgcctcctcgattgaatttggcc
accaagcgtcgaaacgctatggggcacaaagcacataggaaatcattgatgcaaggaata
ctgagcgtagccagtggcgacggaaagactcccacatctgagttgaaagaagggaaaaaa
ttaccagattacttgactaaagatttagaaaacgaaacctatagatctcctgcatgcgca
tacacagctttaccagacccagacaaatattatgagaaagggacctacatcgttgtcaac
cagcaagaaactacttttcgtttcagcgagtcaaaatcactctttatttttgatcgaaca
agtaaaatccgacagttttgcatcaaccttttcattcgtccacttttctctcattttata
atgatggttatcttagccaattgcgtgtgtatgatgctggcggaacctccgccctggata
gaagactatctggagcatgttttcaccgccatatactgttttgaagctgcaataaaaata
ataggaagaggatttatattgcatagatttgcataccttcgcgacccttggaattggttg
gatttcatagtgattgtatttgcattaattacggcattactaaaagatctcgtgggacaa
ttttccgttcttcgtgcttttcgtgtgcttcgagctttgaaaacaatgtcagttgtgcct
gggctgcgaggcattgtcaaggcgctgcttagatcgatacgtgctcttcaggatgccgtc
gttcttactatattttgtgtttcggtgtttgctctcgttggttatcaactgttcagcggg
actctgcgaaataaatgcgttttaataccgggttctctgtcagtggggccagacgcaatg
tacgtcgtagatttgaatatggcaccgaaacatgaagattattttagtgtagcagcttca
actgactattcgagttcaacattcaaaaacgattcaaattttacacatactcttgtcaaa
caatcatacaacagtccgggggtatcgccttttgcactgatcccactttataatacctcg
cgtgttgaaggagaaaccatatatgagggaattacaaacttcgtggagactttacattgg
aatagcgaagacgctaatttaacgtcaactatcctcgatcgattaaacgaaactttggcc
gaaaaatatcgaggttatttaagtacaaagaaaaataatataaataaaacaagagacagt
aatgcgacaacaatgaaaaaaaacgaatataaagaatcgtgtgatacagttttccaacac
tgtttagcgtacgagcagataaaaattcggactacttctcaatgttctattttgaacatg
gcaattcatatgagtcaccgagattccataattaaaagtaattgtgaatatatcgacagc
gttagcaatggcgtcaaattttacgttccctcggccgaaataatgcttaattcaaccaca
ttcactcacgcacgtcctgcaactacacggaatagtatgcatgcagtttcagtatcgtgc
aatacctcttttgaagtgttagcaggtaatatttcttgtatgtacgaggcgatcagatcg
agaaggtcgtcaaactcttccgttgacttctcgaatcattcttgttatcataataataca
tggttgaaaataattgcttatggaaaaacaaatattcctcgctggagagcccgcaaaagc
gtggtattatttcgactatcgaaagtttcttccaccgaccggtcgaatgcgactgatacg
aaatcactggatccaatcaaattttttaacaaagaaaaaggtttccttatttttggagaa
tacacacgggaagagttgagcacagaggtcgagaaagaatgggattgtaatgaaaataat
tacatcttgagatcagtggatagtggaatgtatttttaccagaattcatcaaataggccg
aaccgggaaccactgtactgtacgtcaggagagaactccgtgtgtccaatcgcgtacgaa
tgcaagcaagctggcggaaatccagatttcggttatacaaactttgatcattttttttgg
gccttcctcacgtcattccgactcattgcgcaagatgcatggagccgcctcttctatctg
acacttcatacgatcggaaaaagttacgttgtcttctatatcattgtaatgtttttgggg
tcatactatcttattaacctaatactagctgttgtatatatggcttatgaagagcaacaa
gctgtagttgaggacgaagaacttgaagaagaagagcataaagcagaaataagggaactt
gaggcaagcagcgatgacaacagctctagaacacaagatgatgaaagtggcagtagatgt
gacagtgtacgtagtggatgtgtctccgaaggaactcgtaggttcggattgattaccacg
tcgctaacttcgataaatgatgctggtgggattcgaatacgtcatcggagcagtaagcgt
tctagatatggtcataggaggaccccggttcgcttagatcaggaatcagaacaattatac
agacaacacactaaaaagtatggagatggtttatttaaagaacattcagatatgacctcc
ggaagggaccatagaacatgcaggacaaaacaaccaaatagacaagattcttttacaagc
gaagcgtcatttgtcttaaattcggagaagactacttgttcaaatcctagcagacaaatt
gaaatgcccgcatttcgcaatcgttgttcttatatacgaggatgtcgtggctcacataat
gttgacagaaaattgggttccacagagaacttcatttcggttaaaaagaaagaagaacag
ccggtttcgctttttgttacacctgtccatgaaccaaaatatgctgaaaatactccagac
cctgtcgacatgaaacttcgtaacacaaaattagacgtcatcaatgtaaattttgagatg
ggaaggtcatcctcaatctacagctctggaagcgatatttcatcgaaaactgatgaggct
gtgatgttgcccccactgtcattttgcgagcactgtaggcggaacagaatatctcccagg
agccgtactgtttcagaaaatttacctactactttactggaccctccagcattacgaggt
aatcaagattgcatgaaatcaaacgacgaaataccatgctttctgcaagttgctaccgac
tgtacaagtcgctttagtggatctacatcttctacttctggtttatttgaagcgaccgaa
cgggtagttcaggccgaaatatccccaacgtgtcattggttatctcctccggcgccagca
agatgtttaaaaaaaacaaatagattgacgtcctcgagttcgtctccaagttcatccacc
attatttctaataataaaaagttttcggaagacggatcaagggaatccgcaagtaacaca
aacaaaagcgataacgattcgtgtataccactacaagtgccttctctgttagtgacatca
gcatcctccgagcacatttctacaatgtctggtgtgctcgacagcattaaattatacgac
caatcctgcgaaaacggcggcaaactggaatcggacggagagattgccttggcacgccat
tccttgccaggtgccgtggacaaaccagaattgaagtctaacgataaagaatatggcccg
gtgacttcgctgaacgatatagaccgaatgcacacttcggctttcaaaactttacagaaa
agggcaacccagaagaaaactgcgtacgcagaagatcagacactgcacaattataaaaga
cgttcccgcgcgacatatcctcgctcttcactagacaaacctgacagcagcagtgcagtc
gacattggtacatttgcgattcagcataaaggtcaatgtaacaggcaaattcatggacaa
tacgatttacccgatactattgcaccttaccgtaatctgacagctaatgacgatattgcc
gattttgaggtgcctttggtcaatgggcgacaaggaaacgttccgttggcttccgtcgat
tctaatgaaacgaatggaaaccgaacaagaaagaaaccattaaaacgagttatcagacat
tatttattgagcgccaaacgcagttggatcgatgttttttgtatgtggacttgttgcagt
ccgcgatgggtgaaattccaaagttttgttcgaggattagtactagacccgtttatggat
ttattcataactctttgtatatttcttaacactgtgttcatgatggcagaatatcacccc
atgccgaagtcacacgaaaatctgttggagaatgctaatcttgccttcaccgttgtcttt
acgctggaaatgtttttgaaagttgttgggcttggtccacacacgtattttagagaagct
tggaacatgtttgatgctgttgtagttatatcaagtttacttgaaattgttctcaaaact
ataccaggcctatctgttttacgaactttccgattgatgcggattttaaaactcgcaaaa
tcgtggcctacactcaacaaactcctacgtatcatcggacgaacattaggaaaactatgg
catctcaccattgtatttctccttgtattgtttatatttgcagttgttggaatgcaatta
ctaagagaaaaatataaaactgagtttggggataatatgcctagatggaatttcgacaac
ttccctcatgctttcatggttgtttttcggattcagtgtggggagtggatagagaatatg
ttcacctgtatgaatgtggcatcaccgggaatttgtattccgctttttattttggtactg
gtcatcggaaacttagtgattctcaacttgtttcttgcattattgcttaattcattcagt
ggtgatgccttacaacgcactgatgctgaaccaaacagtttagcagaagcatggcaacgg
atattaggctggattggaaaagggcgaagagcactaaggcattgtaacatcgttactcac
tgctgcaataaaattcgtcttcaattgtgtatgggacagcagacagctagaacaaacaaa
aagtgtgaagttgtgaagaagaaaaaacgagaacaagaatacaggtcaaatctgggaatg
aatttatcatccaatagaacggcgacgctctcagaatgcgaaccacatatgcctgaaatt
aagaacaattgtcttaattcggttactgctcctagtataattctgggaaaagtaaatttg
tcggaattgaaaaaagacagttgtcattctagtatgagtatgcgtggcgataagacagac
gaaacagggattttatgtgataattccgattcagaaaaatacaaaactgaagaattaatc
aaaacacttaacgacggtgacgaccaaaatcacgataaacaccacagccactcttttcat
cgccattccatcaacagtcggggtgcgagcgggactataaaacgtcgcagacgtgatttg
acaagttccaatatgaaaataaggtgtgacggttgtcatagagagtactctgctgtccga
atacggcctgataaaagaaaccgcgaaaaagtgggctttgcacccgccgccgcatttcaa
aatcgtgtggactctccttctccgccggagaccaggtcaaatagggatgatgatatagaa
ctcccgcggttgccaagacatccctttaaagctagcatcgagtatacgagaacttcgcat
gaagatcgaattcgaccaaatgaagaaaacgtagcaaatgataaatcgagttctgtagaa
aacaggtctcgctgccaaagtggacagtctgaaaatgaacagtcgcccattcctgacccg
gttagagttgaaaatgtagccggagtggcgcgaaaatatagcggtgctgaagaaactgat
gttttgatatgtggctacaaatctgtaccatctacgtccgtcaagcaaaattcaacgaga
tcatctcataaaagtagttcgagcgttcgttctcgacgcagcaaagataaaaggggtttc
gaggagggtgataaaaaacttgaggaagcagaaacgcctaaggaaattgaaattcagcag
tgctttcctccattttggataaataaaactgatggaaagttttggaaaattcgcctggtg
ttctataatattgctgtacatcgatattttgaaaatatggtgattttcttcattatgttg
agtagcgttgctttggcttttgaagacatatatctgccgaataaaccagctatggctcga
gttttggatgtcctggataaatttttttgcatattcttcaccattgaaatgttaattaaa
tggaccggatttggtatcaagtattacattaccaacgggtggtgtatattggacctaata
attgtgtttttttctcttcttgatctcgggctgtcattgaacgggggggcgtccgaacaa
ctagcgtctctacgcgtactgagaacctttcgtgcattacggccattgagggcactatca
agatttcagggaatgaaggttgtcgtggatgcattggttcgcgcaattccttcaatattc
catgtgtttcttgtctgcattatcgtatggctcatattcagcattcttggtgtaaatctc
tttggtgggagatttggcagatgtgtcatgtttactggaagttcaggagtgatattgcca
agaccagataattccagtaacaacagtgtttttttagaaatttctgatatgtgcctcccc
aatatgacattccctctcaacgattcttctatacctgcagtcaggaacaaagtagagtgc
ttggaatgtgccagattaatgaacacatcgaatattcagtggattgtacctagcataaac
tttgacaacgttggtcaagggttcttggcacttatgcaagtggcaacttttaaaggatgg
cttgaaattatggcgaatgcaatagatattatgggtattgaacagcagccttcatatgaa
gtttcatttgagaattatgcgtacttttgcatttttattatttttggagcattcttctcc
ctcaatttattcattggtgtcatcatagataatttcaatcagcagaaagttaaatgtgca
ggtggagaggacggagtttttttgacggatgagcaaaaacgttactacaatgcaatgaaa
agaatggcggcaaaagcacctagtaaaccgatacctcgacctaactcatggttccccaat
aagatctacgatttagttactgacagaaagtttgagatcgttgtcatggcaatgatcttg
ttaaacatggtagtaatggctgttgaacattatgatatgagccaggaaatgagcgacgtc
ttgggaaatttcaatttatttttcatttgcatattcttcgttgaagctgttttaaaattg
atcggtcttcgttggtattatttcacggttccgtggaatgtattcgatatcatcgttgtt
gtagtatccattatagtcaaatgcctcttcacagctagcgcgctcagtgacgctattgag
aagtacttcgtgcaaccaactctgtttcgaatcattcgtctatttcgcgtcactaggatt
ctgcgactcatcagagaagcaaaaggtattcgcacgcttctttttgcgctgatgatgtcg
attccggccttgttcaacatcggaagtttattattcttggttatttttatctatgcaatt
ttgggcatgtctcagttcgcttatgtacagaagattgctggtgttgatgatttgcttaat
ttcgaaacttttccaaacgcatttctcgtactttttcaagtttctacatcagaaggttgg
aacacttttatagagcccatactacgcgataagccaccgtcttgcgatcctgatattcca
aacagaaccggcaatggcaattgcggaaatgccacggtcggtgttgcttattttgtcaca
tacgtccttatcaccttcttgatagtaatcaacatgtatatagcaataattttggaaaat
tttgaagtggccaccagagaaagttccgaaccgctaactgcggatgatttcgaacaattt
tttgaagtatggcaacgatatgacgatcggctgtcacagtttattacatttgaacaactt
caacattttctacatcatcttgacttccctcttcgagttccatttcccaacaaggcattt
atagctaacgctcgaatgaaaattacaccaaacgggcgagttcactgtcttgaagtaata
atagcgcttataaaaaaggtacttggagactccccagaacttggtacatttaaaaaggat
atgatggaatctttcatgttaaaatgtaaaacgaaagaaccgttagaagagggagatact
attgatacgatggaatacattaagcgtcgaagatcagcaattgttatacaaaaagcatat
agaaaatataagtgcgaacaaccggaaatagatctcaacagaccgttcgcgttaaacgaa
tgtcagttcactgatagaaattcctcgtcgcctactacgtcagaatccgaagaaactctt
tga
DBGET
integrated database retrieval system
