Styela clava (leathery sea squirt): 120344944
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Entry
120344944 CDS
T07291
Name
(RefSeq) spliceosome RNA helicase DDX39B isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
3.6.4.13
]
Organism
sclv
Styela clava (leathery sea squirt)
Pathway
sclv03013
Nucleocytoplasmic transport
sclv03015
mRNA surveillance pathway
sclv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120344944
09122 Translation
03013 Nucleocytoplasmic transport
120344944
03015 mRNA surveillance pathway
120344944
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sclv03019
]
120344944
03041 Spliceosome [BR:
sclv03041
]
120344944
Messenger RNA biogenesis [BR:
sclv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
120344944
Spliceosome [BR:
sclv03041
]
Complex C
Other components
EJC/TREX
120344944
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
120344944
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
120344944
NCBI-ProteinID:
XP_039270221
LinkDB
All DBs
Position
Unknown
AA seq
426 aa
AA seq
DB search
MADADQDLLDYEEEENETTTETTQDKKEQKKDVKGTYVSIHSSGFRDFLLKPELLRAIVD
CGFEHPSEVQNECIPQAVLGMDVVCQAKSGMGKTAVFVLATLQQLEPVDGQVSVLVMCHT
RELAFQISKEYERFSKYMPTIKVGVFFGGLPITKDQSTLSSNCPHIVVGTPGRLLALIRS
KSLSLKNIKHFILDECDKMLEQLDMRRDVQDIFRLTPHEKQVMMFSATLSKEIRPVCKKF
MQDPMEVYVDDEAKLTLHGLRQHYVKLRDNEKNRKLFDLLDALEFNQVVIFVKSVQRCIA
LAQLLKDQNFPAIDIHRAMNQEERLTRYQLFKNFQKRILVATNLFGRGMDIERVNIVFNY
DMPEDSDTYLHRVARAGRFGTKGLAITFVSDETDAKTLNDVQDRFEVNVTELPDEIDISA
YSECLQ
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atggccgacgctgatcaagatttgttagattacgaagaggaagaaaatgaaactactact
gaaactacacaagataaaaaagaacagaaaaaagatgtgaagggaacatatgtttccata
cacagttctggtttcagagattttcttctcaaaccagaactccttagggcgattgtggat
tgtggttttgaacatccgtcagaagttcagaatgaatgcattccgcaggcagtcttggga
atggatgtcgtttgccaggcaaaatctggtatgggaaagactgctgtctttgtactggcg
acattgcaacagttggaaccagttgatggccaggtttcagttttggttatgtgtcacaca
agagaattggctttccagatcagtaaagagtatgaacggttttcaaaatacatgccaaca
attaaggttggagtatttttcggaggacttccaatcaccaaagatcagtcgacgcttagc
agcaattgcccgcacattgtggttggcacaccaggtcgactgcttgcgctcatcagaagc
aaatctttgtcactcaaaaatatcaaacatttcattttggatgaatgtgacaaaatgctc
gaacaactagatatgcgtcgtgatgtacaagatatattccgactgactccacacgaaaag
caagttatgatgttcagtgccaccctgagcaaggaaattcgtccagtctgcaaaaagttt
atgcaagatccaatggaagtatatgtggacgatgaagcaaaacttaccctacatggtcta
aggcagcactatgttaaattgagggataatgaaaagaaccgcaaactttttgatctattg
gatgcacttgagtttaaccaggttgtcatttttgtcaaatctgtccaaaggtgcattgct
cttgctcaactactgaaggatcaaaacttcccagcaattgatatacatagagcgatgaat
caagaagagcgtcttactcgttaccaacttttcaagaactttcagaaacgtatcctggtt
gcaaccaatttattcggacgtggtatggatattgagagagtcaacattgtttttaactat
gatatgccagaggattcagacacttatttgcacagggtggctcgtgctggtcgttttggc
accaaaggtttggcaatcacatttgtatctgatgagactgatgccaaaaccctgaatgat
gtacaagacagatttgaagtgaatgtgactgaactgccagatgaaatcgatatctccgcc
tacagtgagtgtttacaataa
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