Schizophyllum commune: SCHCO_02481913
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Entry
SCHCO_02481913 CDS
T01331
Symbol
SCHCODRAFT_02481913
Name
(RefSeq) Not1-domain-containing protein
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
scm
Schizophyllum commune
Pathway
scm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SCHCO_02481913 (SCHCODRAFT_02481913)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scm03019
]
SCHCO_02481913 (SCHCODRAFT_02481913)
Messenger RNA biogenesis [BR:
scm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
SCHCO_02481913 (SCHCODRAFT_02481913)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
SCHCO_02481913 (SCHCODRAFT_02481913)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
DUF3819
CNOT1_TTP_bind
CNOT1_HEAT
ARM_Cnot1
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
9595644
NCBI-ProteinID:
XP_003035044
UniProt:
D8PW29
LinkDB
All DBs
Position
Unknown
AA seq
1935 aa
AA seq
DB search
MSLCTTPSFDHADLTPNGIAKLMRNLLSDPPRDSPVLDFQQRQALIVASQSKYGREVVAP
ILYNILPQLSLPPGATLVQTLMQLGPDVTNDPDVVRAIFARFGITDAAPPSDNQVVELIQ
TLGRLAAEGSTMCDVGAVVRALSSYPVQLDWPAVIRSFDWPDRLGVDTATLKLLIAVLLN
SPRDAHPHAVTGFWTVWNNSLYQLRLLDALLSLPADTFNFVSLPGHRIVTVDDVSIASPT
IKSLAANVQGHTWNSLDLFQVLVRLADSDSPDIKGCIRDMLDKAIKISAELVHMGLLQVP
NANWNEIRLEYSRKLLAMFLGGHPNHQLVFMRIWQIQPSYLTDAFRDFYEENPQNITRIL
DVAQDLKILEALLEVRPFTFALDVAALASRREYLNLDKWLGDKVAAHGTEFLRSIADFLK
EKMESEKLTRITDPPVESRTMPINPSTVAIILRVIRGSSHLMEQADVDYALDVQNMCFQV
YPRLMNLAPGADVESGLAVIQYPQDIENEVDLIYKRMYDENISIDEVITMLQQLRTSSNP
RDQEVFSCMIHFLFDEYRFFQSFYPDRELAMTGYLFGSIIQHDLLDYMPLGIAVRYVIDA
LNCPPDKNLFRFGVQALSRFESRLPEWQPLCAELLKNQHLLEARPDLAITLQRALAMGPD
ADLTELRTPGMGGYAEPAPVFLAIQPDAVDEEIETPSEELSDKILFIVNNLAPSNFDTKL
VDMKQSFSDEYARWFANYLVDQRISTEPNNHSLYLRFLDALNRSSLNKYILHETFVKAAA
LLNSEKTVQSSTERSILKNVGSWLGTITLARDRPIKHKNLSFKDLLMEGYDSGRLIVAIP
FVCKTLEPAAQSKVFRPPNPWLMAVISLLAELYHFAELKLNLKFEIEVLCKSLDIDLDTV
EAAVIMRNRPMSDVGPAMPEYPGDIDALPIGGYDAAMLGEPPVMPLTEMRQVGTQIEQIL
TTLAQHVQISSTLSFMLGNPAFKRAVQLAVDRAVREIILPVVDRSVTIAGISTRELVAKD
FATEANEEKMRKAAHSMAAKLAGSLAMVTCKEPLRTNLAQHLRQYLAEHGFSDIAAVDNH
IMDLALDNLDNACSAIERAAMERAISDVDEGFAPAYEMRIHHRETRSGPFWDSSNPVHSL
TTNLPDILRLHKNGVLPVQLNVYEDFTADHKRRTSRPSSTMPFNATGAYPGPATPAPLSL
TAQAPSNEAVMERFGVLIRDLDNVLVQLPIQSLALLPPNHDVRHLVRQIMLNAQESDRRQ
APLQMSQKIVQLLYKAPTQLGREVYVALLDQLCRHFEETGKEAINWLIYAEDERKYNIPV
TVTLLRSRLFDLAVYEQQLAKFLFTDPRPSLINFVIGLIRECLTADPPIATQSQFPYCIE
VLSQIAQSDKATDEVVHFMDDLRGVRRPSLPATPDIIARQPSTKPESDQLREAGFWFQSW
VQIYHRSPNPEKSFVGFITQVLKSGVLNIDEASQLFFRVCAETSVNHYAKAVAVGNYASA
YSYVDAMSKLVVFIIKYHGDPTGVNADQAKVHYFKKVLSILILVLAYFHEEQEPFQQKPF
FRLFSSLLNDLNSMEASLGTVYFPLLVVFCETLSGLQPIYFPGFAFSWMGLISHRLLMPK
LLLSENREGWAIMQKLLIALFKFLAPFLKDSELSVPARDMYRGALRILLVLLHDFPDFLS
EYYFSLCDVIPYRCIQLRNIVLSGFPQTMVLPDPHLRGMKPEVIVEMMGPIPPILSDFAA
GLKGGDLKAYLDQYLLGRGSTSFLPSLKERLRISSPVEGLTETYNLSLLNALVMYIGVSS
VAQAKARNGTALFAPSDPGVVALQYLANSLDAEGQFHLITSMTLHLRYPNAHTYWFCSLL
LHLFTEVEDEKFQEIMTRVLLERFMVHRPHPWGAVMTFVELLRNPKYNFWSKEFINVAPE
VSMLLESVARNIYPQ
NT seq
5808 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctgtgcactactccctcgttcgaccatgccgatcttacccccaacggcattgcg
aagctcatgcgtaacctcctctccgaccctccgcgcgactctcctgtgctcgattttcag
cagcggcaagcactgattgtggcctctcagtcaaaatacggcagggaggttgttgcgccc
atcctttacaacatacttcctcaactgagcctgccacccggggccaccttggtgcaaacg
ctgatgcagctaggaccagatgtgaccaacgatcctgacgtcgttcgggcgatcttcgct
cgtttcggcatcacggacgccgctcctcccagcgacaaccaggtcgtcgagttgattcag
acgttgggtcgcttggctgcagaagggtccacgatgtgcgatgtcggggccgtcgtcaga
gcgctcagtagctatcctgtgcagctcgactggcctgcggtcatacggtcgttcgactgg
ccggaccggctgggtgttgacacagcaaccctcaagttgctgatagctgttctgctcaac
tcaccgagggacgctcatccgcatgctgtgacgggtttctggaccgtgtggaacaactcg
ctgtatcaactccgcctcctcgatgccctcctctccctccctgcggataccttcaacttc
gtctccttgcctggccaccgcatcgtgaccgtcgacgatgtgtcaatcgccagtccgacg
atcaagtcgctcgcagctaatgtccagggacatacgtggaactcgctcgaccttttccaa
gtgctggtcaggttggcggattctgactcgccggacatcaaaggctgcatccgcgacatg
ttagacaaggcaatcaagatcagtgcggagctggttcatatggggttgttgcaggttccg
aacgcgaactggaatgagatccgtctggagtactcgaggaagctgctcgcgatgttcctt
ggcggccaccccaaccatcagctagtcttcatgcgcatatggcagattcagccgtcctac
ctcaccgacgccttccgcgacttctacgaggaaaaccctcagaacatcactcgcattttg
gacgtcgcgcaggacctcaagatacttgaggcgctgcttgaagtgcggcctttcaccttc
gcgctagatgtggctgcgctggcttcacgtcgcgagtacctcaacctggacaagtggctc
ggggataaggttgcagctcatggcacggagttccttcggtctatcgccgatttcctcaag
gaaaagatggagagcgagaaattaaccaggataaccgaccctccggtcgagagccggaca
atgccgatcaatcccagcacagtcgctattatcttgcgtgtcatccgtggcagctcgcac
ctcatggagcaagcggacgtggactacgcgctggatgtgcagaacatgtgcttccaggtg
tacccgcgcctgatgaaccttgcccccggagcggacgtggaatcgggtcttgccgtcatc
cagtacccgcaagacattgagaacgaggtcgacctcatctacaagcggatgtacgacgag
aatatctccatcgacgaggtcatcactatgctgcagcagttgcggacatcaagcaacccg
cgcgaccaggaggtcttctcttgcatgatccacttcctcttcgacgagtatcgcttcttc
cagtccttctacccagaccgcgagctggctatgacgggctacctcttcggctctatcatt
cagcacgacctcctcgactacatgccactagggatcgcagttcgctatgtcatcgacgcg
ctgaactgcccgccggacaagaaccttttcaggttcggtgtgcaggcgctgtctcgcttc
gagtcgaggctaccagaatggcagccgctgtgcgccgagttgctcaagaaccaacacttg
ctcgaggctcggcctgacttggcgattactctgcagcgtgcactggccatggggccagac
gctgatctgacagagctgcgcacgcctggcatgggcggttacgctgaaccagcgcccgtc
ttcctggccattcagcccgatgcggtcgacgaggagattgagacgccttccgaggagcta
tccgacaagatcctgttcatcgtcaataacctggcgccgagcaacttcgacacaaaactg
gtcgacatgaagcagtcgttctccgacgagtacgcgcggtggttcgccaactacttggtc
gaccagcgcatcagcacggagccgaacaatcactcgctgtacctgcgcttccttgacgcg
ctcaaccgctcgtcgctgaacaagtatatccttcacgagaccttcgtcaaggcggcggcg
ctgctgaactcggagaagacagtgcagtcgagtacggagaggagcatcttgaagaacgtc
gggtcgtggcttgggacaatcacgctcgcgcgcgatcgaccgatcaagcacaagaacctc
tcgttcaaggacttgctgatggagggctacgacagtggcaggctcattgtggcgataccc
ttcgtctgcaagacgctcgagccggcagcgcagtcgaaggttttccggcctccgaacccg
tggctcatggccgtcatcagcctccttgccgagctgtaccactttgcagagctcaagcta
aacctcaaatttgagatcgaggtgctgtgcaagagtcttgacatcgacctcgacaccgtc
gaggcggcagttatcatgcgcaaccgcccgatgagcgacgttggccctgctatgccggag
tatcctggcgacatcgacgcgctgcccataggcggttacgacgctgctatgctcggcgag
ccgcctgtcatgcccttgacagagatgcgccaggtcggcacgcagattgagcagatcttg
acgacgctggcgcagcatgtgcagatcagcagcacgctgagcttcatgcttggcaaccct
gcgttcaagcgtgcggtgcagcttgcggtcgacagagcagttcgcgagatcatcttgccg
gtcgttgaccgctccgtcacgattgctggtatctccacgcgcgagcttgtcgccaaggac
tttgccacggaggccaatgaggagaagatgaggaaggcggcgcacagcatggcagccaaa
cttgccggcagcctcgcgatggtcacttgcaaggagccgttgcggacgaacctggcccag
catctgcgccagtatttggctgagcatggcttctctgacattgccgcggtcgacaaccat
atcatggaccttgctcttgacaacttggacaacgcttgtagcgccatcgagagggcagcc
atggagcgtgccatctccgacgtcgacgagggctttgctcctgcgtacgagatgcggatc
catcatcgcgagactcgcagcggacccttctgggactcctccaatcctgttcatagcctt
accaccaatctgcctgacatccttcgtttgcacaagaacggtgttctccctgtgcagctc
aacgtctacgaggacttcactgccgaccacaagcggagaaccagccgcccgagttcgacc
atgcctttcaacgctactggcgcataccccggacctgcgacgcccgcgccgctcagtctg
acggcacaagcgccgagcaacgaggccgtcatggagcgcttcggtgtcctcatccgcgat
ctggacaatgtcctggttcagctccccattcagagcttggcgctccttccgcccaatcac
gacgttcgccatctcgttcgccagatcatgctgaacgcgcaagagtcggaccgcaggcag
gcaccgctgcagatgtcgcagaagattgttcagctgctgtacaaggcccccactcagctt
gggcgggaggtttatgtcgcgctgcttgatcaactctgcaggcactttgaggagaccggc
aaggaggccatcaactggttgatctatgctgaggacgagcgcaagtacaacatccctgtc
actgtcaccttgttgcgcagcaggttgttcgacctcgccgtctacgagcagcagctggcg
aagttcttgttcactgatcctcggccgagtctgatcaacttcgtcatcggcctcattcgc
gagtgcttgacggctgacccgccgatcgcgacgcagagccagttcccatactgcattgag
gttctcagccagatcgcacagtcggacaaggccactgatgaggtggtgcacttcatggat
gatctgcgtggcgtgcggcgtccgtcgctgccagctacgcccgacatcatcgccaggcag
ccgtcgacaaagcccgagagcgaccagcttcgcgaagcaggcttctggttccagagctgg
gtgcagatctaccaccgctcgccaaacccggagaagagcttcgtcggcttcatcacgcag
gtcctcaagagcggcgtgctcaacatcgacgaggcgtcccaactgttcttccgcgtctgc
gcagagacgagcgtcaaccactacgcgaaggccgtggcggtcgggaactacgcgtccgcg
tactcctacgtcgacgcgatgtcgaagttggtcgtgttcatcatcaagtatcacggcgac
cccaccggcgtcaatgccgaccaggcgaaggtgcactacttcaagaaagtgctgtccatc
ctgatccttgtcttggcgtacttccacgaggagcaggagccattccagcagaagcccttc
ttccgcctgttctcgagcctcttgaacgacctcaactccatggaggcgtcgctcgggacg
gtctacttcccgctcttggtcgtgttctgcgagaccttgagtggcttgcagccgatatac
ttccctggctttgccttctcttggatgggtctaatttcgcaccgccttctgatgcccaag
ctgctgctctcagagaaccgcgaggggtgggcgatcatgcagaagcttctcatcgctctc
ttcaagttcttggctcccttcctcaaggactccgagctgagcgtcccagcgcgtgacatg
tatcgcggcgcccttcgcatccttctcgtcctcttgcacgacttccccgacttcctcagc
gagtactacttctccctctgcgacgtcatcccctaccgctgcatccagctgcgtaacatc
gttctcagcggtttcccgcagaccatggtccttcctgaccctcacctccgcggcatgaag
cctgaggtcatcgtcgagatgatgggccccatccctccgatcctctcggactttgcggca
ggactgaagggcggcgatctgaaggcgtacctcgaccagtacctcctgggtcggggctcg
acgtccttcttgccgtccctgaaggagcggttgcggatcagcagcccggtggaggggctt
acggagacgtacaacctgtcgctgctgaacgccctcgtcatgtacatcggtgtttcctct
gtcgcacaggctaaggccaggaacgggaccgccctgttcgcgcccagcgaccctggagtc
gtcgctctgcagtacctcgccaactcgcttgacgccgaagggcaattccacctcatcacg
tccatgacgcttcatctacgctaccctaacgcccacacttactggttctgctctctcctc
cttcacctcttcaccgaggtcgaagacgagaagttccaggagatcatgacgcgcgtgctg
ctcgagcgcttcatggtgcatcgtcctcacccatggggcgctgtgatgaccttcgttgag
ctgctccggaacccgaagtacaacttctggagcaaggagttcatcaacgttgcaccggag
gtctccatgcttctggagagtgtcgcccgcaacatttatcctcagtag
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integrated database retrieval system
