Schizophyllum commune: SCHCO_02609130
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Entry
SCHCO_02609130 CDS
T01331
Symbol
SCHCODRAFT_02609130
Name
(RefSeq) beta and beta-prime subunits of DNA dependent RNA-polymerase
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
scm
Schizophyllum commune
Pathway
scm03020
RNA polymerase
scm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
scm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SCHCO_02609130 (SCHCODRAFT_02609130)
09124 Replication and repair
03420 Nucleotide excision repair
SCHCO_02609130 (SCHCODRAFT_02609130)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scm03021
]
SCHCO_02609130 (SCHCODRAFT_02609130)
03400 DNA repair and recombination proteins [BR:
scm03400
]
SCHCO_02609130 (SCHCODRAFT_02609130)
Enzymes [BR:
scm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SCHCO_02609130 (SCHCODRAFT_02609130)
Transcription machinery [BR:
scm03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
SCHCO_02609130 (SCHCODRAFT_02609130)
DNA repair and recombination proteins [BR:
scm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
SCHCO_02609130 (SCHCODRAFT_02609130)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_4
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
9595041
NCBI-ProteinID:
XP_050201954
LinkDB
All DBs
Position
Unknown
AA seq
1692 aa
AA seq
DB search
MLGHQFAYSAAPVRKVKEVQFGILSPEEIKANSVAKIEFPEINDEGTHRLKTGGVNDPRM
GTIDRNFKCQTCGEGMSECPGHFGHIELARPVFHPGFIVKVKKILECICVNCGKLKADIS
DPSFADRIRHVRDPKHRLAAVWAYCKGKMMCETDDPKEEGQEDHEEKKGHGGCGHIQPVI
RKEGLKMFVQYKKAKDDDDEGKSVQSEKRLIMPSEVYTTFKKMSEDDLRLLGLSEEYARP
EWMILTVLPVPPPPVRPSIAMDGGAQKSEDDLTYKLIEIIKASGNVRRCEQEGAPAHVVN
EFEQLLQFHVATYMDNDIAGIPQAMQKSGRPIKAIRARLKGKEGRLRGNLMGKRVDFSAR
TVITGDPNLELDQVGVPRSIAMNLTFPERVTPYNIDYLQTLVRNGPTTYPGARYVVRDTG
ERIDLRYNKRADAFLQFGWIVERHLKDGDYVLFNRQPSLHKMSMMSHRVKLMPYSTFRLN
LSVTPPYNADFDGDEMNMHIPQSEETRAELSQIAWVPRQIVTPQSNKPVMGIFTLRDCFM
DWNQVQNILLWVPSWDGSPKPFMVIPRGINIARKSEKDDGMFIENGDIMYGVVDKKTVGA
SQEKGPEATRTLFTGLQQVVNYWLFHNGFSIGIGDTIAGPDVMAKITKTIDQQKEKVKEL
TADAYWDLLKPMPGMTIRETFESKVNHELNKARDDAGKDAQDGLKDDNNVKQMVVAGSKG
SFINISQIVEGKRIPFGFRHRTLPHFTKDDYSPESRGFVENSYLRGLTPQEFFFHAMSGR
EGLIDTAVKTAETGYIQRHVMVCYDGTVRNSLGDLDGMDGAFIERQGVDTLLMGDREMEK
KYKIDITDYGESRLPAGVLQVGLIDNLNQQEALDLQEKLNQEWEQLRADRDELRLYVFRG
YDYRNAPQYLPNAMQIFHIDRRKPSDLHPGYIVDQVRGLCERVSGVLREDNEFSREAQDN
SARLFRMLLRAHFAARKVLTVWHFTQQAFDWAIGEVETKFNQSLANPGEMCGTLAAQSIG
EPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVAANIKTPAHTIYLVPEKAQSRLGAKA
VQEQLAFTTLRTVTAAVEIWYDPDTRNTVIEEDQEMIGSFWDIADADPGSPEYEKYQRQS
SWLLRLVLDRRAMIDRKVDVDYVANQIINNFKTDLVVMWSQDASEDTMIIRCRVVSGEEK
TEDGLEDIEEDVFLRQLENTMLNSIVLRGVKGIDRVFLSEKDKTHINDDGTVGQEKEWVL
ETNGTNLKAVMCVDGVDYTRTSSNNCVEVFNTLGIEAGRQSVLKELKSCIEFDGSYVNYR
HIALLCDLMTQRGTLMAITRHGINRSDTGALMRCSFEETVEILMEAAAVGEKDDCHGVAE
NVMFGQMAPMGTGAFDVALDINMLKDAIVDTHHMPTLAGDGGMTPGQVAMTPYDSNSPMW
DQGMFKGEQAAFSPLAVNGSEEPSGAYGGLTGYGQSPYGAGSFSPGRPGYSPTSPSYSPA
SPSFASAQSPFIGGASPFGASPYATSPFIGGATSPTYSPTSPALNLTSPSYSPTSPRYSP
TSPSFSPTSPRYSPQSPSFSPSSPRYSPTSPSFSPASPRSPQMASPTSPKYSPTSPMASP
ASPRYCKPKLAISSPTSPAYSPASPAYSPTSPAYSPSSPTWSPSSPSQNANGQNQNGSSS
TNNHYQASPSWD
NT seq
5079 nt
NT seq
+upstream
nt +downstream
nt
atgcttggacaccagttcgcgtactcggccgcgcctgtgcgcaaggtcaaggaggttcag
ttcggtatcctgtctccggaggaaatcaaagccaactctgtggcgaaaattgagtttccc
gagatcaatgacgaaggcactcaccgtctcaaaacgggtggcgtcaacgaccctcgcatg
ggcaccatcgaccgcaacttcaagtgccagacctgtggtgaaggcatgtccgagtgcccg
ggccatttcggtcacatcgaactggcgcgaccagtctttcaccctggtttcatcgtcaaa
gtgaagaagatcctggagtgcatctgcgtgaactgtggaaagctgaaagccgacatctcc
gacccctctttcgcggacaggatccgacacgttcgggatccgaagcatcgcctggcggcc
gtttgggcgtactgcaagggcaaaatgatgtgcgagacggatgaccccaaggaagagggc
caggaagatcacgaagagaagaaaggccacggcggttgcggccatattcagcctgtgatc
aggaaggagggcttgaaaatgttcgtccagtacaagaaggccaaggacgacgacgatgag
ggcaagtcggtgcagtctgagaagcgcctcatcatgccgtccgaggtttacacgacgttc
aagaagatgtctgaggacgatttgcgcttgctcggtttgtccgaggagtacgcaaggccc
gagtggatgatcttgactgtcttgcccgtcccgccacccccagtccgtcccagtatcgcg
atggacggtggtgcccagaagagcgaggatgacttgacgtacaagctcatcgagatcatc
aaggcgtccgggaacgtacggcggtgtgagcaggagggcgcacccgcacacgtcgtgaac
gagttcgagcagttgttgcagttccatgttgcgacgtacatggacaacgacattgctggt
atcccgcaggcgatgcagaagtccggtcgtccgatcaaggcgattcgcgcgcgcctaaag
ggcaaggagggtcgtctgcgtggtaacttgatgggcaaacgtgtggacttctcggcgcgt
actgtcatcaccggtgatccgaacctcgagctcgaccaagttggtgtaccgaggagtatc
gcgatgaacctgaccttccctgagcgagtcacaccgtacaacatcgactacctgcagacg
ctagtacggaatgggcctacaacttaccctggtgctcgctacgtcgtccgtgatacagga
gaacgtatagatctgcggtacaacaagcgtgcggacgcgttcttgcagtttgggtggatc
gtggagcggcatctgaaggacggagattatgtgctcttcaaccgtcagcctagtctgcac
aagatgagtatgatgagccatcgggtgaagctcatgccgtactccaccttccgtctgaac
ctgtccgtgacgcctccttacaacgccgatttcgacggtgatgagatgaacatgcatata
ccccagagcgaggagacaagagcagagctcagccagatcgcatgggtgccgcgtcagatt
gttacgcctcagtccaacaagcccgtcatgggtatctttaccttgcgcgactgcttcatg
gattggaaccaggtgcagaacatcttgctctgggtacccagctgggatggcagcccgaag
ccctttatggtcatcccccgtggtatcaacatcgcgcggaagtcggaaaaggacgacggc
atgttcattgagaacggcgacatcatgtatggtgtcgtcgacaagaagactgtcggcgct
tcgcaggagaagggtccggaggccacgcgcaccctcttcactgggttgcagcaggtcgtc
aactactggctcttccataacggcttcagcattggcatcggcgacaccatcgcgggcccg
gacgtcatggcgaagatcacgaagacgatcgaccagcagaaggagaaggtgaaggagctc
accgccgacgcctactgggacttgctcaagcccatgccgggtatgaccatccgcgagacg
ttcgagagcaaggtcaaccacgagctgaacaaggctcgtgacgacgccggaaaggacgcg
caggacggcctgaaggacgacaacaacgtcaagcagatggtggtggcaggttccaagggt
tccttcatcaacatctcgcagattgtggagggcaagcgtatccccttcggcttccgtcat
cgcactttgccgcacttcaccaaggacgactacagtccagaatcccgcggcttcgtcgag
aactcgtacttgcgtggcctcacaccgcaggagtttttcttccacgcaatgtcgggtcgt
gaaggtctcatcgacacggccgtcaagaccgccgagaccggttacatccagcgtcatgtc
atggtctgctacgacggtactgtgcgcaactcactcggcgatcttgacggcatggatggc
gccttcattgagcggcagggtgttgacacgctcctcatgggcgaccgggagatggagaag
aagtacaagatcgacatcacggactacggcgagagcaggcttccggctggtgtcctccag
gtcggcctcatcgacaacctgaaccagcaggaggcgttggacttgcaggagaagttgaat
caggagtgggagcaactgcgtgcggaccgcgacgagcttcgcctctacgtctttcggggc
tacgactaccgcaacgcgccacagtacctcccgaacgccatgcagatcttccatattgac
aggcgaaagccgagcgatcttcacccgggctacatcgtcgaccaggtccgcggcctctgc
gagcgcgttagcggtgtgctccgcgaagacaacgagttcagccgtgaggcgcaggacaac
tcggccaggctgttccgcatgcttctgcgcgcgcacttcgctgcgcggaaggtgctcact
gtctggcactttacgcagcaggcgttcgactgggccatcggggaagtggagacgaagttc
aaccagtcgttggcgaacccgggcgagatgtgcgggaccctagcggcgcagtctatcggc
gaaccggcgacgcagatgacgctcaacaccttccactacgccggtgtgtccagtaagaac
gtcacgctcggtgttcctcggctgaaggagatcatcaacgttgccgcgaacatcaagacg
ccagcgcacactatctacctcgtgcccgagaaggcgcagagtaggcttggtgcgaaggcc
gtgcaggagcagctcgcgttcacgacgttacgcactgtcaccgctgctgtggagatctgg
tacgacccggacacgcgcaacacagtcattgaagaggatcaagagatgattgggtccttc
tgggacattgccgatgccgacccaggctcccctgagtacgagaagtatcagcgccagtcg
tcgtggcttctccgtctcgtcctcgaccgtagggctatgatcgaccgcaaggtcgacgtc
gactacgtcgccaaccagatcatcaacaacttcaagaccgatctcgtcgtcatgtggagt
caggatgcctcagaggacacgatgatcatccggtgtcgtgtcgtgagcggcgaggagaag
acggaggacgggcttgaggacatcgaggaggatgtgttcctgcgtcagctggagaacacg
atgctcaactccatcgtcttgcgcggtgtgaagggcattgaccgtgtcttcctgagcgag
aaggacaagacccacatcaacgacgatggtactgtcggccaggagaaggagtgggtgctc
gagacgaacggtacgaacttgaaggccgtcatgtgcgtggatggtgtcgactacacgcgc
acgtcgtcgaacaactgcgtggaggtgttcaatacgttgggtatcgaggccggccgccag
tccgtgctgaaggagctgaagtcgtgtatcgagttcgacggttcctacgtcaactaccgt
catatcgcccttctttgcgacctgatgacccagcgcggcactctcatggctatcactcga
cacggtatcaatcgctcggacactggcgcactcatgcgttgttcgttcgaggagaccgtc
gagattctcatggaggccgctgcggtcggcgagaaggacgactgccacggtgtcgccgag
aacgtcatgttcgggcagatggcgcccatgggtaccggtgctttcgacgtcgccctcgac
atcaacatgctcaaggacgcgattgtcgacacgcaccatatgccgacgctggcgggcgat
ggcggcatgaccccggggcaggttgcgatgacgccgtacgatagcaactcgccaatgtgg
gaccagggaatgttcaagggcgagcaggcggcgttctcgccgctagcggtcaacggcagc
gaggagccgagcggcgcgtatggcgggctcactggctacggccagagcccatacggcgcg
ggcagcttctcgcctggacgtccggggtacagcccgacctcgccgagctactcgcctgcg
tcgccgagcttcgcaagcgcacagtcgccgttcatcggcggtgcatcgccgttcggcgca
tctccgtatgcaacatcgccgttcatcggtggcgcgacgtccccgacgtactcgccgact
tcgcctgcgttgaacctcacgtcgccgtcgtactcgccgacgagcccgcggtattcgccg
acgtctccatcgttttcgccaacgtcaccgaggtacagcccgcagtcgccgtcgttcagc
ccgtcttcgccgagatactcgcctacgagtccgtcgttcagtccggcttcgcctcgttct
cctcaaatggcttctcccacgtcgccgaagtactcccccacctcaccaatggcctcgccg
gcttcccccagatactgtaagcccaaacttgcgatttcctcccccacatcacccgcatac
tcgccggcgtctcctgcttactcccccacctcccccgcatacagcccctcctcgccaacg
tggtcgccgtctagcccgtcgcagaacgccaacggtcagaaccagaatggcagctcgtcg
acgaacaaccactaccaggcgtcgccttcgtgggattag
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integrated database retrieval system
