Streptomyces coelicolor: SCO5820
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Entry
SCO5820 CDS
T00085
Symbol
hrdB, SC5B8.10
Name
(RefSeq) RNA polymerase sigma factor
KO
K03086
RNA polymerase primary sigma factor
Organism
sco
Streptomyces coelicolor
Pathway
sco02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sco00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SCO5820 (hrdB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sco03021
]
SCO5820 (hrdB)
Transcription machinery [BR:
sco03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SCO5820 (hrdB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HC2
Sigma70_r1_1
CDC27
CF222
CNDH2_M
Motif
Other DBs
NCBI-GeneID:
1101262
Kitasato:
SCO5820
LinkDB
All DBs
Position
6367665..6369200
Genome browser
AA seq
511 aa
AA seq
DB search
MSASTSRTLPPEIAESVSVMALIERGKAEGQIAGDDVRRAFEADQIPATQWKNVLRSLNQ
ILEEEGVTLMVSAAEPKRTRKSVAAKSPAKRTATKAVAAKPVTSRKATAPAAPAAPATEP
AAVEEEAPAKKAAAKKTTAKKATAKKTTAKKAAAKKTTAKKEDGELLEDEATEEPKAATE
EPEGTENAGFVLSDEDEDDAPAQQVAAAGATADPVKDYLKQIGKVPLLNAEQEVELAKRI
EAGLFAEDKLANSDKLAPKLKRELEIIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLF
LDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVIN
KLARVQRQMLQDLGREPTPEELAKELDMTPEKVIEVQKYGREPISLHTPLGEDGDSEFGD
LIEDSEAVVPADAVSFTLLQEQLHSVLDTLSEREAGVVSMRFGLTDGQPKTLDEIGKVYG
VTRERIRQIESKTMSKLRHPSRSQVLRDYLD
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
gtgtcggccagcacatcccgtacgctcccgccggagatcgccgagtccgtctctgtcatg
gcgctcattgagcggggaaaggctgaggggcagatcgccggcgatgacgtgcgtcgggcc
ttcgaagctgaccagattccggccactcagtggaagaacgtactgcgcagcctcaaccag
atcctcgaggaagagggtgtgacgctgatggtcagtgccgcagagcccaagcgcacccga
aagagcgtcgcagcgaagagtcccgccaagcgcaccgccacgaaggcggtcgcggcgaag
ccggtgaccagcaggaaggcgaccgctcccgccgccccggcggcgcccgcgaccgagccc
gccgccgtcgaggaagaggcgcccgccaagaaggcggcggccaagaagacgaccgccaag
aaggcgacggcgaagaagaccaccgccaagaaggcggcggccaagaagaccaccgccaag
aaggaagacggcgagcttctcgaggacgaggcgaccgaggagccgaaggccgcgacggag
gagcccgagggtaccgagaacgcgggcttcgtgctgtccgacgaggacgaggacgacgcc
ccggcccagcaggtcgccgcggccggtgccaccgccgacccggtcaaggactacctcaag
cagatcggcaaggtccctctgctcaacgccgagcaggaggtcgagctcgccaagcgcatc
gaggccggtctgttcgccgaggacaagctggcgaactccgacaagctggcgcccaagctc
aagcgcgagctggagatcatcgccgaggacggccgccgcgccaagaaccacctgctggag
gccaacctccgcctggtggtctcgctggccaagcgctacaccggccgcggcatgctcttc
ctggacctcatccaggagggcaacctcggtctgatccgcgcggtggagaagttcgactac
accaagggctacaagttctccacgtacgccacctggtggatccgccaggcgatcacccgc
gcgatggccgaccaggcgcgcaccatccgtatcccggtgcacatggtcgaggtcatcaac
aagctcgcgcgcgtgcagcgccagatgctccaggacctgggccgtgagcccaccccggag
gagctggccaaggagctcgacatgaccccggagaaggtcatcgaggtccagaagtacggc
cgcgagcccatctcgctgcacacgccgctgggcgaggacggcgacagcgagttcggtgac
ctcatcgaggactccgaggcggtcgtcccggccgacgcggtcagcttcacactgctgcag
gagcagctgcactccgttctcgacaccctgtccgagcgcgaggcgggcgtcgtctccatg
cgcttcggactcaccgacggtcagccgaagaccctcgacgagatcggcaaggtgtacggc
gtcacgcgtgagcgcatccgccagatcgagtcgaagaccatgtcgaagctgcgtcacccc
tcgcgctcgcaggtgctgcgcgactacctcgactag
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