Snodgrassella communis: PYG29_01900
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Entry
PYG29_01900 CDS
T09364
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
scom
Snodgrassella communis
Pathway
scom03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
scom00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PYG29_01900 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scom03021
]
PYG29_01900 (rpoB)
03400 DNA repair and recombination proteins [BR:
scom03400
]
PYG29_01900 (rpoB)
Enzymes [BR:
scom01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PYG29_01900 (rpoB)
Transcription machinery [BR:
scom03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PYG29_01900 (rpoB)
DNA repair and recombination proteins [BR:
scom03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PYG29_01900 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
WMY92149
LinkDB
All DBs
Position
410358..414539
Genome browser
AA seq
1393 aa
AA seq
DB search
MSYSFTEKKRIRKSFAKRANVLEVPFLLATQLDSYTQFLQMETPFDQRADTGLQAAFQSI
FPIVSHNGYARLEFTHYVLGEPLFDIPECQLRGITYAAPLRARIRLVILDKESSKPNVVK
EVRENEVYMGEIPLMTPSGSFIINGTERVIVSQLHRSPGVFFEHDRGKSHSSGKLLFSAR
IIPYRGSWLDFEFDPKDLLYFRIDRRRKMPVTILLKALGFTPEQILNMFYDKEQYFLSKD
GVHTNLIPSRLRGETAKFDLVDKDGKVLVQKGKRINAKNIRDIVAADIKWLEVEPESLIG
KVLAADVIVPDTGEVLAKTNDEITEELLAQFDIQSVKEISTLYINDLDQGGYVSNTLRTD
EIEGQQAARIAIYRMMRPGEPPTEDAVEALFNRLFFSEDSYDLSRVGRMKFNTRTYQQKL
LEAQQESWYGRLMTQTFADADKEGNNVLTIPDIVSVIATLVELRNGHGEVDDIDHLGNRR
VRSVGELAENQFRSGLSRVERAVKERLNQAESENLMPHDLINAKPVSAAIKEFFGSSQLS
QFMDQTNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLI
NSLAVYARTNKYGFLETPYRRVVDGKVTNDIDYLSAIEEGRFVIAQANADLDKEGRIIGD
LVTCREKGETIMATPDRVQYMDVATGQVVSVAASLIPFLEHDDANRALMGANMQRQAVPC
LRAEKPLVGTGIERSVAIDSATAIAASRGGVVEYVDANRVVVRVNDDEATAGEVGVDIYN
LVKFTRSNQSTNINQRPAVQKGDVIARGDVIADGASTDLGELALGQNMTIAFMPWNGYNY
EDSILISERVVAGDRYTSIHIEELNVVSRDTKLGAEEITRDIPNLSERMQNRLDESGIVY
IGAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRMPTGMSGTVIDVQ
VFTREGIERDKRAKAIIDAELKRYRQNLTDQLRIFNDDAFDRIERLILGQKVNGGPLKLA
KGAEVTKDYLTSLPSRHDWFDIRLSDESIAKQVELIKESLQAKHEESDVLYEIKKKKLTQ
GDELQPGVQKMVKVFIAIKRRLKAGDKMAGRHGNKGVVSRILPVEDMPYMADGRSVDIVL
NPLGVPSRMNIGQILEVHLGWAAKGIGERIDRMLAEKRAADDIRAFLEKVYNSSGKKEDL
SQFNDEEIINLAQHLRKGMTVATPVFDGAEESEIKNMLALAYPEDDPEIQKLGFNDTRTQ
MTLYDGRTGEAFDRKVTVGVMHYLKLHHLVDEKMHARSTGPYSLVTQQPLGGKAQFGGQR
FGEMEVWALEAYGAAYTLQEMLTVKSDDVTGRTKMYENIVKGEYKIDAGMPESFNVLLKE
IRSLGLDMDLERY
NT seq
4182 nt
NT seq
+upstream
nt +downstream
nt
atgtcctactcttttactgaaaaaaaacgtatccgtaaaagctttgccaaacgcgccaat
gtattggaagtaccgtttttattagctacacagttggattcctacacgcagttcttgcaa
atggaaacaccctttgaccaacgtgctgatactggtcttcaggcagctttccagtctatt
tttccaattgtgagccataacggttatgcccgtctggaatttacccattatgtgctaggt
gaaccactctttgatattcctgagtgtcaattacgtggcataacttatgctgctccatta
cgggcacgaattcgtctggtgattttagacaaagagtcatccaaaccaaatgtggttaaa
gaagttcgtgaaaatgaagtatacatgggtgaaattccactgatgacacctagtggttca
ttcattatcaatggtactgagcgtgtgattgtgtcacagttacaccgttcgcctggcgta
ttcttcgaacatgaccgcggtaaatcacactcatcaggtaaattgctgttttctgctcgt
atcattccttaccgtggatcatggcttgactttgaatttgatcccaaggatctgctttat
ttccgtattgaccggcgccgtaaaatgccggtaaccattttgctgaaagcattaggcttt
actccagagcagatactgaatatgttttatgataaggagcagtacttcttatctaaagat
ggtgtgcacactaatctgataccgtctcgtttgagaggtgaaactgccaaatttgatctg
gtagataaagacggtaaagtattggtgcagaagggtaagcgcattaatgctaaaaatatc
cgtgacatcgttgctgctgatatcaaatggctggaagtcgaaccagaaagcctgattggc
aaggtgctggctgctgatgtcattgtgccggatactggtgaagtattggcgaaaaccaat
gatgaaattactgaagaattactggcacaatttgatattcagtcagtgaaagagatttcc
accctgtatatcaatgatctggatcagggcggctacgtttccaacaccctgcgtaccgac
gaaattgaaggtcagcaggctgcgcgcattgccatttatcgcatgatgcgtccgggtgaa
ccgccaaccgaagacgcagtagaagcattgtttaaccgtctattctttagtgaagacagt
tatgacctgtcacgcgttggccggatgaaatttaacacccgtacctatcagcaaaaattg
ctagaggcacaacaggaatcttggtatggccgtctgatgactcagacctttgccgatgct
gataaagaaggcaataatgtcctgactattccagatatcgtgtctgtgattgctaccttg
gttgaattgcgcaacggtcatggtgaagtagatgatattgatcatctgggcaatcgtcgc
gtgcgttcggttggcgaactggctgaaaatcagttccgtagtggtttgtcgcgtgtagag
cgtgctgttaaagagcgcctcaatcaggctgaatccgaaaatctgatgccacatgacctg
attaatgccaaaccggtttcagctgccattaaagaattttttggttccagccagctatca
cagtttatggaccagactaacccactgtctgaagtcacccataaacgtcgtgtatctgcc
ttggggccgggtggtctaacgcgtgaacgtgctggttttgaagtgcgtgacgtacatcct
acccattatggccgtgtgtgcccgattgagacaccggaaggtccgaatattggtttgatt
aactcactggctgtgtatgctcgtaccaataaatacggttttctggaaacaccttaccgt
cgtgtggttgatggtaaagtaaccaacgatatcgactatctgtctgccattgaagaaggg
cgctttgttattgctcaggctaatgcagatttggataaagaaggtcgtattatcggtgat
ttagtaacctgtcgtgaaaaaggtgaaaccatcatggcaacaccagaccgcgtgcagtat
atggacgtggctactgggcaagtggtttctgtagcggcttcactgattccgttcttggag
catgatgatgcgaaccgcgccttgatgggtgccaatatgcaacgtcaggccgttccgtgc
ctgcgtgccgaaaaaccgctggtaggtaccggtattgaacgttcagttgccatagatagt
gctactgctattgcagccagccgtggtggtgtggttgagtatgtcgatgccaaccgtgta
gtggtacgcgtcaatgacgacgaagccactgctggtgaagtaggtgtggatatttacaat
ctggtgaaattcacccgttccaaccaatctaccaatatcaatcagcggccagcagtacaa
aaaggcgatgtcattgcacgtggcgatgtgattgctgatggtgcctctaccgatttaggt
gagcttgcactgggacagaatatgaccatcgctttcatgccatggaatggttacaactat
gaagactcgattctgatatctgaacgggtagttgccggtgatcgttatacttccattcac
attgaagaattaaatgtggtatcccgtgacaccaaactgggggcggaagaaattacccgt
gatattccgaatttgtctgagcgcatgcagaatcgtctggatgaatccggtattgtttat
attggtgctgaagtagaagcaggtgacgtactggtaggcaaagtaacgcctaaaggtgaa
acccagctgacaccggaagaaaaactgctgcgagccatttttggtgaaaaagccagtgat
gtaaaagatacctccctgcgtatgcctaccggcatgagtggtaccgttattgacgtacaa
gtgttcacccgcgaaggcattgagcgtgacaaacgcgccaaagcgattattgatgcagag
ctgaaacgctatcgtcagaacctgaccgatcagttgcgcattttcaatgatgatgcattt
gatcgcattgaacgcctgattctgggacagaaagtgaatggtggtcccttaaaactggct
aaaggtgcagaagttactaaagactatctgacatcattacccagccggcacgattggttt
gatattcgtctgagcgatgaaagtatcgccaaacaggtagaactgattaaagaaagtttg
caggccaaacatgaagaatcagatgttctatatgaaattaagaagaaaaaactcactcag
ggcgatgaattgcagccgggtgtacagaagatggttaaggtgtttatcgccatcaaacgt
cgtctgaaagccggtgacaagatggctggtcgtcacggtaataaaggtgtggtatcgcgc
atcctgccggttgaagacatgccttatatggctgatggccgctcagtggatattgtactg
aacccgctaggtgtaccaagtcgtatgaacatcggccagattctggaagtgcatctaggc
tgggcagccaagggtattggtgaacggattgaccgtatgctggcggaaaaacgtgctgct
gacgatattcgtgctttccttgagaaagtgtacaacagcagtggtaaaaaagaggactta
tcgcagtttaatgatgaagagattatcaatctggcacaacatctgcgtaaagggatgacg
gtagcaacgccggtatttgatggtgcggaagaatccgaaattaaaaatatgctggcgctg
gcctacccagaagatgatccggaaatccagaagctggggttcaacgatactcgtacacaa
atgacactgtatgatggtcgtactggtgaagcctttgaccgtaaggtaacagtaggggtg
atgcactacctcaaactgcatcacttggttgatgagaaaatgcatgctcgttcaactggt
ccgtatagtctggtaacacagcagccactaggtggtaaagcccagtttggtggtcagcgt
tttggtgagatggaggtgtgggcacttgaagcttatggtgctgcttataccttgcaggaa
atgttgactgtgaaatcagatgacgtaaccggccgtaccaaaatgtatgaaaacatcgtt
aaaggcgaatacaagattgacgccggtatgccggaatctttcaatgtattattgaaagag
attcgctctttgggcttggatatggatttggaacgttactaa
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