Sulfidibacter corallicola: J3U87_10655
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Entry
J3U87_10655 CDS
T07864
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
scor
Sulfidibacter corallicola
Pathway
scor03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
scor00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
J3U87_10655 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scor03021
]
J3U87_10655 (rpoB)
03400 DNA repair and recombination proteins [BR:
scor03400
]
J3U87_10655 (rpoB)
Enzymes [BR:
scor01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
J3U87_10655 (rpoB)
Transcription machinery [BR:
scor03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
J3U87_10655 (rpoB)
DNA repair and recombination proteins [BR:
scor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
J3U87_10655 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
ALF
Motif
Other DBs
NCBI-ProteinID:
QTD52926
UniProt:
A0A8A4TSJ1
LinkDB
All DBs
Position
complement(3700744..3704985)
Genome browser
AA seq
1413 aa
AA seq
DB search
MINIQWASYDYFLQMDKLPNERSDMGLKAVFESLFPISDFKDTCSLEFVDYTIGNWECRC
GKLQGIHHNRTQCNNCSHMIISDQYSGHWLTCDSCGATNENQKAICDVCGTSVKLKVKYS
VDECKERGLTYDAPLKVTVRLVVWDKEENANDAQPLPRDIKEQEVYFGDIPLMTEQGTFI
INGTERVIVSQMHRSPGVFFSEGDDQGTFHAQIIPYRGSWIEFETDTKGLLYVRIDRKRK
FPGTGFIRALGCLDGNIHSNESILRKFQEPYKIRFQNGKIQLGLYEPALGTKFLDDVMSE
KDEAIATGGRKVSRAAQRALRKAGVEWYAVQPETLPKITLLADLVNEETGEIIAEANTTI
DEDLLNAIFESGVDQADVFFPETDPAGDLVSNTLMGDQVRSPEEALVEIYRKMRPGDPPT
VESSRKLFMQMFFDPQRYDFSRVGRLKFCTKLNLEENLDQRVLTPEDFYATIEYLLKLHR
NIGKVDDIDHLGNRRVRSVGELLENQLRVGLVRMQRAIKEKMSLYNDLNTIMPHELINAK
PVMASIKEFFGSSQLSQFMDQTNPLSEITHKRRLSALGPGGLSRERAGFEVRDVHTSHYG
RICPIETPEGPNIGLISSLSCYARINEFGFIESPYYRVENGRVIREVRVINPGDSGHKKG
DVITADQMDELNKQLTGDGKEPVSFDPFAHYLSAWEEDKYVIAQANAPLDDDDCLSQEQV
NSRCGGEFKLFPRETINYIDVSPKQVVSVAASLIPFLENDDANRALMGSNMQRQAVPLLK
TEAPLVGTGMEYIAARDSGATLVCRNNGWVETVDAEHIVIRLEGARDDVGEIPDFGVDVY
YLSKFKRSNQNTCFNQKPLVKKGQYVRKNQVIADGACTECGELALGKNVVVAFMPWRGYN
FEDAILISERVVKEDVYTSIHIEEFEIEARDTKLGPEEITRDIPNLSEEFLKDLDDSGII
RIGASIKPGSILVGKVTPKGETQLTPEEKLLRAIFGEKAGDVRDASLYAPPGIRGTVVDV
KIFSRKGVEKDSRSLQIEEEQTLKLKQNLEDQEQIIQNQAVKNIRRLLKDKEVLDDVLNP
LTGEVVVKAGETIDPAQLEGLKLSDLKRIDVTDPNVQLEIANISSKTNQQIEVARQVFEE
EVEKLKRGDELPPGVIKLVKVFVAVKRKLQVGDKMAGRHGNKGVVSLILPEEDMPYMPDG
TPVDVVLNPLGVPSRMNVGQILETHLGMAGKRLGRHFATPVFDGARELDIKQLLGDADFP
VSGKTVLYDGRTGEPFEQPVTVGVIYILKLHHLVDNKIHSRSIGPYSLITQQPLGGKAQF
GGQRFGEMEVWALEAYGAAHILQELLTVKSDDVQGRTRIYEAIVKGDPACEPGIPESFNV
LVKELQSLALDVQLFKEGEFEKWIVEPGESSEE
NT seq
4242 nt
NT seq
+upstream
nt +downstream
nt
ttgatcaatattcaatgggcttcctacgactattttctccaaatggacaaattgcccaat
gagcgatcggacatggggctcaaagcggtgtttgaatccctgtttcccatctccgatttc
aaagacacctgctccctcgagttcgtggattacaccatagggaactgggagtgccgttgt
ggtaagttgcaggggattcaccacaatcgcactcaatgtaataactgctcgcacatgatt
atttccgaccagtactccggtcactggttgacttgtgattcctgcggcgcgacgaatgag
aaccaaaaggcgatttgtgatgtttgcggcaccagtgtcaaattgaaagtcaaatattcg
gtggacgaatgtaaggagcgcggcctcacctacgacgcgcccctgaaagtcaccgttcgc
ctcgtagtctgggacaaagaagagaacgccaacgatgcccaaccgcttcccagggacatc
aaggaacaggaagtctatttcggcgacatcccgctgatgaccgagcaaggtaccttcatc
atcaacggtaccgagcgcgtcatcgtgtcgcagatgcaccgctcgcccggcgtctttttc
tccgagggcgacgatcaggggacctttcacgcacagatcattccctaccgcggctcctgg
atcgagttcgaaaccgataccaagggcctgctctacgttcgcatcgaccgcaagcgcaaa
ttccccggcaccggcttcatccgtgccctgggttgcctcgacggcaacatccacagcaac
gaaagcattttgcgtaaattccaggagccctacaagatccgtttccaaaacggcaagatc
cagttgggtctctacgagccggctctgggcaccaaattcctcgacgacgtgatgtcggag
aaggacgaggcgatcgccaccgggggtcgcaaggtttcccgcgccgcccaacgcgccctg
cgcaaggccggcgtcgagtggtacgcggtccagcccgagacccttcccaagatcacgttg
ctggccgatctggtcaacgaagaaaccggtgagatcatcgccgaagccaacaccaccatc
gacgaagacctgctgaacgcgattttcgaaagcggcgtcgaccaggcggacgtgttcttc
cctgaaaccgatccggccggcgacctggtctccaacaccctcatgggcgatcaggttcgc
tctcccgaggaagcgctggtggagatctaccgcaagatgcgtcccggcgatccgcccacg
gtggaaagctcgcgcaagctcttcatgcagatgttcttcgatccccagcgttacgacttc
tcgcgcgtgggccgcttgaaattctgcaccaagctcaacctggaagagaacctcgaccaa
cgggtcctgacccccgaggatttctacgccacgatcgagtacctgctcaaattgcatcgc
aacatcggcaaggtcgacgacatcgaccacctgggcaaccgccgcgtgcgctcggtcggt
gagctgctcgagaaccagcttcgcgtcggtctggtgcgcatgcagcgggccatcaaagag
aagatgagcctctacaacgacctgaacacgatcatgccgcacgagctgatcaacgccaag
ccggtcatggcgagcatcaaggaattcttcggttccagccagctctcccagttcatggac
cagaccaacccgctttcggagatcacccacaagcgccgtctctcggcactgggccccggt
ggcctgagccgcgagcgtgccggtttcgaggtgcgcgacgttcacacctcgcactacggt
cgtatctgtccgatcgagacgccggaaggtccgaacatcggtttgatctcgtcgttgagc
tgctacgcccgcatcaacgaattcggcttcatcgaatcgccctactaccgcgtcgaaaac
ggtcgcgtgattcgcgaagttcgcgtgatcaaccccggcgacagcggtcacaagaagggc
gacgtgatcaccgccgatcaaatggacgagctcaacaagcaattgaccggcgacggcaag
gagcccgtttccttcgatcccttcgcccattacctcagtgcatgggaagaagacaagtac
gtcatcgcccaggccaacgcgccgctcgacgacgacgattgcctttcgcaggaacaggtc
aactcccgctgcggcggtgaattcaagttgttcccgcgcgaaaccatcaactacatcgac
gtttcgccgaaacaggtcgtctcggtcgccgcttcgctgattccgttccttgagaacgat
gacgccaaccgcgccctgatgggatccaacatgcagcgtcaggccgtgccgctgttgaag
accgaggcgccgctggtgggtaccggcatggaatacatcgcggcccgcgattccggtgcg
accctggtctgccgcaacaacggatgggtcgagaccgtggacgccgaacacatcgtcatt
cgcctggaaggcgcccgcgacgacgtgggtgaaatccccgatttcggtgtggacgtctac
tatctctccaagttcaagcgcagcaaccagaacacctgcttcaaccagaagccgttggtc
aagaaaggccagtacgttcgcaagaaccaggtgatcgccgacggggcctgcaccgagtgc
ggcgagctggctctgggcaagaacgtcgtcgtcgccttcatgccctggcgcggctacaac
ttcgaggacgcgatcctgatctccgaacgcgtggtcaaggaagatgtctacacctcgatc
cacatcgaggaattcgaaatcgaagcgcgcgacaccaaactcggtcccgaggaaatcacg
cgcgacatccccaacctcagtgaagagttcctcaaggatctcgacgactcgggcatcatc
cgcatcggtgcctccatcaagccaggcagcattctggtgggtaaggtcacccccaagggc
gaaacccagctcacgccggaagagaagctgctgcgcgccatcttcggcgagaaggccggc
gacgtgcgcgacgcctcgctctacgcaccaccgggtatccgcggcaccgtggtcgacgtc
aagatcttctcgcgcaaaggcgtcgagaaagattcccgttcgcttcagatcgaggaagaa
cagaccctgaaactgaagcagaacctcgaagatcaggaacagatcatccagaaccaggcg
gtcaagaacatccgtcgtctgctcaaggacaaagaggtcctcgacgacgtgttgaatccg
ctgacgggcgaagtggtcgtcaaggccggcgaaaccatcgatcccgcacaactcgaaggt
ctcaagctctcggatctcaaacgcatcgatgtgaccgatcccaacgtccagttggagatc
gccaacatttcctccaaaaccaaccagcagatcgaagtcgcccgtcaagtattcgaggaa
gaagtcgagaagctgaagcggggtgacgaactgccgcccggcgtcatcaaactggtcaag
gtgttcgtcgccgtgaagcgcaagctgcaggtcggcgacaagatggccggtcgtcacggt
aacaagggtgtcgtctccctgatcctgcccgaagaggatatgccgtacatgcccgatggt
acgccggtcgacgtggtgctcaacccgctgggtgttccctcgcgtatgaacgtcggtcag
attctcgagacccacctcggcatggccggcaaacgcctgggccgccacttcgccacaccg
gtcttcgacggtgcccgcgaattggacatcaagcagttgctcggcgacgccgacttcccc
gtgtccgggaaaaccgtactttacgacggccgaaccggtgaaccctttgaacaaccggta
acggttggtgtaatctacatacttaagcttcaccaccttgtcgataacaagatccactcg
cgatccattggtccctactcgctgatcacgcagcagcccttgggcggtaaagcccagttc
ggcggccagcgattcggtgagatggaggtttgggcgttggaggcctacggtgccgcgcac
atccttcaggaactgctcacggtcaagtcggacgacgtccaaggtcggacccgcatctac
gaggcgatcgtgaaaggcgatcccgcttgcgaacccggcattccggaatcgttcaacgtt
ctcgtgaaggagcttcagagcctcgcgttggacgttcaattgttcaaggaaggcgagttc
gagaagtggattgtggaaccgggcgaaagtagcgaagagtaa
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integrated database retrieval system
