Salinivibrio costicola: HBA18_00855
Help
Entry
HBA18_00855 CDS
T06511
Symbol
rfaD
Name
(GenBank) ADP-glyceromanno-heptose 6-epimerase
KO
K03274
ADP-L-glycero-D-manno-heptose 6-epimerase [EC:
5.1.3.20
]
Organism
scot
Salinivibrio costicola
Pathway
scot00540
Lipopolysaccharide biosynthesis
scot01100
Metabolic pathways
scot01250
Biosynthesis of nucleotide sugars
Module
scot_M00064
ADP-L-glycero-D-manno-heptose biosynthesis
Brite
KEGG Orthology (KO) [BR:
scot00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00540 Lipopolysaccharide biosynthesis
HBA18_00855 (rfaD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
scot01005
]
HBA18_00855 (rfaD)
Enzymes [BR:
scot01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.20 ADP-glyceromanno-heptose 6-epimerase
HBA18_00855 (rfaD)
Lipopolysaccharide biosynthesis proteins [BR:
scot01005
]
Core region
HBA18_00855 (rfaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Epimerase
GDP_Man_Dehyd
3Beta_HSD
RmlD_sub_bind
KR
Polysacc_synt_2
ThiF
adh_short
Ldh_1_N
TrkA_N
NAD_binding_10
Phage_T7_Capsid
Shikimate_DH
Motif
Other DBs
NCBI-ProteinID:
QIR05052
LinkDB
All DBs
Position
1:complement(173383..174327)
Genome browser
AA seq
314 aa
AA seq
DB search
MIIVTGGAGMIGSNLVKALNQQGYRDIVVVDNLKDGTKFANLVDLDIADYMDKDDFLTQI
MAGDDFGPIEAVFHQGACSATTEWDGKYMMLNNYEYSKELLHYCIERDIPFLYASSAATY
GGRDSDFIEAPDYEGALNVYGYSKQQFDNYVRRVWDDAAAHGETLPPITGFRYFNVYGPR
EQHKGSMASVAYHLNQQILNGENPKLFEGSDTFKRDFVYVGDVCAMNIWFWQQQISGIFN
CGTGRAEPFSAVANAVIAFHGKGEIEEIPFPAHLKGRYQAYTQADLTKVREAGYTATFKT
VAEGVAAYLAEINR
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
atgataattgtgacaggtggcgccggcatgatcggcagcaacttagtaaaagcactcaac
caacaaggctatcgcgatattgtggtggtcgataacctaaaagacggcaccaagttcgct
aacctcgttgatctcgatatcgccgactacatggataaagacgatttcctcacccaaatt
atggcgggtgatgattttggtcctattgaggcagttttccaccaaggcgcctgttctgcc
accacggagtgggatggtaagtacatgatgctcaataactatgagtactccaaagagcta
ctccattattgtattgagcgtgatattccattcttatacgcctcatcagcagccacttac
ggcggccgcgacagcgattttattgaagcgcccgactatgaaggggcactcaatgtctat
ggctattcgaagcagcaattcgataactatgtccgtcgcgtatgggacgatgcggcagct
catggtgaaacactgccacctatcaccggctttcgctactttaatgtgtatggcccacgc
gagcagcacaaaggcagtatggcctcagtggcctaccaccttaaccaacaaattctaaac
ggtgaaaatcccaaactttttgaaggcagtgataccttcaagcgtgattttgtctatgtc
ggcgatgtttgcgcaatgaatatctggttctggcagcagcaaatctctgggatttttaac
tgtggtaccggccgtgctgagccattcagcgccgttgccaatgcagtgatcgcgtttcac
ggcaaaggcgaaatcgaagagattccatttcctgcccacctgaaaggccgttaccaagcc
tacacgcaagccgatctcaccaaggttcgagaggcaggctacaccgcaacatttaaaacc
gttgctgaaggtgttgccgcgtatttggccgaaattaatcgctaa
DBGET
integrated database retrieval system
